BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0130.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum ... 262 6e-68 ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiim... 245 7e-63 ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter... 244 2e-62 ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Mars... 240 3e-61 ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans... 208 1e-51 gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54] 207 1e-51 ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I... 207 3e-51 ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii AT... 206 3e-51 ref|YP_001797305.1| ribonuclease III [Polynucleobacter necessari... 203 3e-50 ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001]... 202 8e-50 >ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1] gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 128/128 (100%), Positives = 128/128 (100%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI Sbjct: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 121 FLDSGFEA 128 FLDSGFEA Sbjct: 121 FLDSGFEA 128 >ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans] emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans] Length = 328 Score = 245 bits (625), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 116/128 (90%), Positives = 122/128 (95%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 MD LLQ RLGHTFKDA L+QQALTHRSHS++HNERLEFLGDS+LNCVVASLLF+RY KI Sbjct: 1 MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVHNERLEFLGDSILNCVVASLLFDRYSKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 121 FLDSGFEA 128 FLD+GF A Sbjct: 121 FLDAGFNA 128 >ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter331] gb|AEK62696.1| Ribonuclease III [Collimonas fungivorans Ter331] Length = 333 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/128 (91%), Positives = 123/128 (96%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 MD LLQ RLGHTFKDA+LLQQALTHRSHS LHNERLEFLGDS+LNCVVASLLF+RY KI Sbjct: 1 MDLMLLQNRLGHTFKDATLLQQALTHRSHSTLHNERLEFLGDSILNCVVASLLFDRYTKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSR+RANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRVRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 121 FLDSGFEA 128 FLD+GF+A Sbjct: 121 FLDAGFDA 128 >ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille] gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille] Length = 322 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 114/127 (89%), Positives = 120/127 (94%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 MD LLQ RLGHTFKDA LLQQALTHRSH ++HNERLEFLGDS+LNCVVASLLF+RY KI Sbjct: 1 MDLTLLQNRLGHTFKDAVLLQQALTHRSHGSVHNERLEFLGDSILNCVVASLLFDRYSKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQQSLYEIAQRLELS FLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 121 FLDSGFE 127 FLD+GF+ Sbjct: 121 FLDAGFD 127 >ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8] gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8] Length = 253 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/128 (79%), Positives = 113/128 (88%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 M L+ RL H F D +LL+QALTHRSH A HNERLEFLGDSVLN VVA++LFERY KI Sbjct: 1 MSLATLENRLDHHFSDPALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYSKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQ SL +IAQRLELSQ+LRLGEGELKSGGFRRPSILADT+EALFGA+ Sbjct: 61 DEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120 Query: 121 FLDSGFEA 128 FLD+GF+A Sbjct: 121 FLDAGFDA 128 >gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54] Length = 253 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/128 (79%), Positives = 113/128 (88%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 M L+ RL H F D +LL+QALTHRSH A HNERLEFLGDSVLN VVA++LFERY KI Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYSKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQ SL +IAQRLELSQ+LRLGEGELKSGGFRRPSILADT+EALFGA+ Sbjct: 61 DEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120 Query: 121 FLDSGFEA 128 FLD+GF+A Sbjct: 121 FLDAGFDA 128 >ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I] ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822] ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50] sp|Q7VW39.1|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III sp|Q7W5J6.1|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III sp|Q7WD32.1|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I] emb|CAE38580.1| ribonuclease III [Bordetella parapertussis] emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50] gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS] Length = 256 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/128 (78%), Positives = 113/128 (88%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 M L+ RL H F D +LL+QALTHRSH A HNERLEFLGDSVLN VVA++LFERY K+ Sbjct: 4 MSLATLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGKL 63 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQ SL +IAQRL+LSQ+LRLGEGELKSGGFRRPSILADT+EALFGA+ Sbjct: 64 DEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 123 Query: 121 FLDSGFEA 128 FLD+GFEA Sbjct: 124 FLDAGFEA 131 >ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 102/128 (79%), Positives = 113/128 (88%) Query: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 M L+ RL H F D +LL+QALTHRSH A HNERLEFLGDSVLN VVA++LFERY KI Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYSKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQ SL +IAQRLELSQ+LRLGEGELKSGGFRRPSILADT+EALFGA+ Sbjct: 61 DEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120 Query: 121 FLDSGFEA 128 FLD+GF+A Sbjct: 121 FLDAGFDA 128 >ref|YP_001797305.1| ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 263 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/123 (79%), Positives = 109/123 (88%) Query: 6 LQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGDL 65 LQ+RLG+TFK LL QALTHRSHS +NERLEFLGDS+LNCVVA +L+ERY +DEGDL Sbjct: 12 LQERLGYTFKKPELLNQALTHRSHSKKNNERLEFLGDSILNCVVAEMLYERYSDLDEGDL 71 Query: 66 SRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDSG 125 SR+RANLVKQQ+LYEIAQ L LS +LRLGEGELKSGGFRRPSILADTLEA+ GAIFLD G Sbjct: 72 SRVRANLVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRRPSILADTLEAVTGAIFLDGG 131 Query: 126 FEA 128 FEA Sbjct: 132 FEA 134 >ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001] gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001] Length = 475 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 95/123 (77%), Positives = 111/123 (90%) Query: 6 LQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGDL 65 L+ RL + F++A LL+QALTHRSHS+ HNERLEFLGDSVLNC VA+LLF+R+ K+DEGDL Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 65 Query: 66 SRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDSG 125 SR+RANLVKQQSLYEIAQ L +S+ LRLGEGEL+SGGFRRPSILADTLEA+ GA+FLD G Sbjct: 66 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGAVFLDGG 125 Query: 126 FEA 128 FEA Sbjct: 126 FEA 128