BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0124.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775346.1| transmembrane sigma-E factor negative regula... 409 e-112 ref|XP_002536914.1| conserved hypothetical protein [Ricinus comm... 213 1e-53 ref|YP_001100335.1| transmembrane sigmaE factor negative regulat... 116 3e-24 ref|YP_001353053.1| anti sigma-E protein [Janthinobacterium sp. ... 111 5e-23 ref|YP_004753526.1| sigma factor RpoE negative regulatory protei... 104 1e-20 ref|YP_004028457.1| hypothetical protein RBRH_02622 [Burkholderi... 69 4e-10 ref|YP_001580358.1| anti sigma-E protein, RseA [Burkholderia mul... 65 5e-09 ref|YP_001945545.1| sigma-E factor negative regulatory protein [... 65 5e-09 >ref|YP_003775346.1| transmembrane sigma-E factor negative regulatory transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63438.1| transmembrane sigma-E factor negative regulatory transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 232 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/209 (99%), Positives = 208/209 (99%) Query: 1 MTIALAGLRSSKDAQQAWEDYHRIGEVLRSEEMDVPLSAGFSARMSALLEAEPTIVAPHA 60 MTIALAGLRSSKDAQQAWEDYHRIGEVLRSEEMDVPLSAGFSARMSALLEAEPTIVAP + Sbjct: 24 MTIALAGLRSSKDAQQAWEDYHRIGEVLRSEEMDVPLSAGFSARMSALLEAEPTIVAPQS 83 Query: 61 TAVEPAPVAQPAVAVQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQ 120 TAVEPAPVAQPAVAVQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQ Sbjct: 84 TAVEPAPVAQPAVAVQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQ 143 Query: 121 AMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDD 180 AMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDD Sbjct: 144 AMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDD 203 Query: 181 YLFAHQRFSPSYSSAQYARSAAFSTDADK 209 YLFAHQRFSPSYSSAQYARSAAFSTDADK Sbjct: 204 YLFAHQRFSPSYSSAQYARSAAFSTDADK 232 >ref|XP_002536914.1| conserved hypothetical protein [Ricinus communis] gb|EEF25468.1| conserved hypothetical protein [Ricinus communis] Length = 111 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/111 (100%), Positives = 111/111 (100%) Query: 99 MPSAAAAAAAVAAVFVAMPQQQAMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQ 158 MPSAAAAAAAVAAVFVAMPQQQAMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQ Sbjct: 1 MPSAAAAAAAVAAVFVAMPQQQAMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQ 60 Query: 159 NVTQVSSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQYARSAAFSTDADK 209 NVTQVSSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQYARSAAFSTDADK Sbjct: 61 NVTQVSSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQYARSAAFSTDADK 111 >ref|YP_001100335.1| transmembrane sigmaE factor negative regulator protein [Herminiimonas arsenicoxydans] emb|CAL62212.1| putative anti sigma-E protein RseA, N-terminal [Herminiimonas arsenicoxydans] Length = 186 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 112/213 (52%), Gaps = 49/213 (23%) Query: 1 MTIALAGLRSSKDAQQAWEDYHRIGEVLRSEEMDVPLSAGFSARMSALLEAEPTIVAPHA 60 + I LA LR +D ++AW YH+IG+ LRS+++++ F+AR+ A LEAEPTI+ P Sbjct: 19 LEITLAALRQ-QDGREAWTLYHQIGDALRSDDLNLQPDTAFTARIFASLEAEPTIMVP-- 75 Query: 61 TAVEPAPVAQPAVAVQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQ-- 118 VE K G R L RF MP A AA A F+ +PQ Sbjct: 76 --VE--------------KRIGGG-----RESTLKRFAMP-GMAVAAVAVAAFLTVPQMM 113 Query: 119 -QQAMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPR 177 Q A + A A APV A A P+ VT S +G+V RDPR Sbjct: 114 PQHAPLVASHSASAPVVLAA-----------------AGPETVTVAS---HEGDVLRDPR 153 Query: 178 IDDYLFAHQRFSPS-YSSAQYARSAAFSTDADK 209 ID+YL AHQRFSPS YS+AQYARSA F+ D+DK Sbjct: 154 IDEYLLAHQRFSPSVYSTAQYARSATFAVDSDK 186 >ref|YP_001353053.1| anti sigma-E protein [Janthinobacterium sp. Marseille] gb|ABR90577.1| anti sigma-E protein [Janthinobacterium sp. Marseille] Length = 182 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 112/208 (53%), Gaps = 52/208 (25%) Query: 3 IALAGLRSSKDAQQAWEDYHRIGEVLRSEEMDVPLSAGFSARMSALLEAEPTIVAPHATA 62 IALA LR ++ + W YH+IG+ LRS++++ LSA F+ARM A L+AE TI+ P Sbjct: 26 IALAALRQ-QEGRDTWNMYHQIGDALRSDDLNTQLSADFNARMFARLDAEATIMVP---- 80 Query: 63 VEPAPVAQPAVAVQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQAM 122 + AVA AA +R A AAA A F+ +PQ M Sbjct: 81 ----ADKRGAVAKDAA----------------LRRFAMPAGMAAAVAVAAFLTVPQ---M 117 Query: 123 VTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDDYL 182 +T++ APV +A+A P+ +T S + GEV RDPRIDDYL Sbjct: 118 MTSN------------APVVTTAAVA--------PETITVAS---KDGEVLRDPRIDDYL 154 Query: 183 FAHQRFSPS-YSSAQYARSAAFSTDADK 209 AHQRFSPS YSSAQYAR+A F+ D+DK Sbjct: 155 LAHQRFSPSVYSSAQYARAATFAVDSDK 182 >ref|YP_004753526.1| sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] gb|AEK62703.1| Sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] Length = 207 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 116/209 (55%), Gaps = 29/209 (13%) Query: 3 IALAGLRSSKDAQQAWEDYHRIGEVLRSEEMDVPLSAGFSARMSALLEAEPTIVAPHATA 62 +ALA LR ++ + W+ YH+IG+++RS++M + +SA FSARM+A LEAEP I+A A Sbjct: 26 MALAALRQAE-GRDTWDVYHQIGDIMRSDDMALTMSADFSARMAARLEAEPAIIAA-PLA 83 Query: 63 VEPAPVAQPAV-AVQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQA 121 V P Q AV Q A G R+ + RF +P AAAA A AA F+ P Sbjct: 84 VTSQPSEQIAVGGGQPLHAGGTGVRRSIK-----RFALPGMAAAAVA-AAAFIITP---- 133 Query: 122 MVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDDY 181 Q AV V PSA ++ +A+ V+ + G V RD R+D+Y Sbjct: 134 -------------QTAVVGVGGPSAAPQLALASASA--VSDDHVVTHSGVVLRDSRMDEY 178 Query: 182 LFAHQRFSPS-YSSAQYARSAAFSTDADK 209 L AHQRFSPS YS+AQYAR A F+ DA+ Sbjct: 179 LTAHQRFSPSLYSAAQYARPATFAPDANN 207 >ref|YP_004028457.1| hypothetical protein RBRH_02622 [Burkholderia rhizoxinica HKI 454] emb|CBW74313.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 228 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 34/179 (18%) Query: 13 DAQQAWEDYHRIGEVLRSEEM--DVPLSAGFSARMSALLEAEPTIVAPHATAVEPAPVAQ 70 D + W DYH IG+VLRS+E+ D +SA F AR SA L EP ++AP A Q Sbjct: 59 DGRALWTDYHLIGDVLRSDELAEDAAMSAAFVARFSARLAEEPHVLAPSAL--------Q 110 Query: 71 PAVAVQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQAMVTADAKA- 129 +V R L R ++P A AAAA +V +PQ Q + AD A Sbjct: 111 TSV---------------RRTLALRRRMLPVFAVAAAAATLSWVVVPQLQGLGGADTPAQ 155 Query: 130 VAPVSQVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDDYLFAHQRF 188 VA VS V + A+A+ PQ++ Q+ + RD +D YL AHQ+F Sbjct: 156 VASVSGSGVEAMQ-RVALASTPMNGGVPQDI-------QEANIVRDADLDQYLAAHQQF 206 >ref|YP_001580358.1| anti sigma-E protein, RseA [Burkholderia multivorans ATCC 17616] gb|ABX15861.1| anti sigma-E protein, RseA [Burkholderia multivorans ATCC 17616] Length = 209 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 46/178 (25%) Query: 17 AWEDYHRIGEVLRSEEMDVP--LSAGFSARMSALLEAEPTIVAPHATAVEPAPVAQPAVA 74 AW YH IG+ LRS+E+ + LSA F+ARMSA LEAEP ++AP A APV + ++ Sbjct: 49 AWAHYHLIGDALRSDELALSPALSAAFTARMSAALEAEPHLLAPAA-----APVTRKLLS 103 Query: 75 VQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQAMVTADAKAVAPVS 134 ++ R ++P+ A AAAA ++ +PQ Q T A Sbjct: 104 LR-------------------RRVVPAFAVAAAAATLTWIVVPQMQTAGTPGA------- 137 Query: 135 QVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQG----EVKRDPRIDDYLFAHQRF 188 V VA V P TN Q VT + AQ G + RD +D YL AHQ+F Sbjct: 138 -VQVASVGAP--------TNGGLQRVTVAQASAQPGLQDVNIIRDASLDQYLEAHQQF 186 >ref|YP_001945545.1| sigma-E factor negative regulatory protein [Burkholderia multivorans ATCC 17616] dbj|BAG43009.1| sigma-E factor negative regulatory protein [Burkholderia multivorans ATCC 17616] Length = 205 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 87/179 (48%), Gaps = 46/179 (25%) Query: 17 AWEDYHRIGEVLRSEEMDVP--LSAGFSARMSALLEAEPTIVAPHATAVEPAPVAQPAVA 74 AW YH IG+ LRS+E+ + LSA F+ARMSA LEAEP ++AP A APV + ++ Sbjct: 45 AWAHYHLIGDALRSDELALSPALSAAFTARMSAALEAEPHLLAPAA-----APVTRKLLS 99 Query: 75 VQAAKAAANGDHRAARPGRLVRFLMPSAAAAAAAVAAVFVAMPQQQAMVTADAKAVAPVS 134 ++ R ++P+ A AAAA ++ +PQ Q T A Sbjct: 100 LR-------------------RRVVPAFAVAAAAATLTWIVVPQMQTAGTPGA------- 133 Query: 135 QVAVAPVNVPSAIATVSTTNANPQNVTQVSSLAQQG----EVKRDPRIDDYLFAHQRFS 189 V VA V P TN Q VT + AQ G + RD +D YL AHQ+F+ Sbjct: 134 -VQVASVGAP--------TNGGLQRVTVAQASAQPGLQDVNIIRDASLDQYLEAHQQFA 183