BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0123.p (175 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775345.1| RNA polymerase sigma-E factor (sigma-24) tra... 357 4e-97 ref|YP_001353052.1| RNA polymerase sigma factor RpoE [Janthinoba... 335 2e-90 ref|YP_004753527.1| RNA polymerase sigma factor [Collimonas fung... 332 1e-89 ref|ZP_08272632.1| RNA polymerase sigma factor RpoE [Oxalobacter... 332 2e-89 ref|YP_001100336.1| RNA polymerase sigma factor RpoE [Herminiimo... 331 3e-89 ref|YP_003907758.1| RNA polymerase, sigma-24 subunit, ECF subfam... 301 2e-80 ref|YP_559920.1| RNA polymerase sigma factor RpoE [Burkholderia ... 301 2e-80 ref|YP_001118892.1| RNA polymerase sigma factor RpoE [Burkholder... 301 3e-80 ref|YP_002910841.1| RNA polymerase sigma factor RpoE [Burkholder... 301 3e-80 ref|YP_001857069.1| RNA polymerase sigma factor RpoE [Burkholder... 300 4e-80 >ref|YP_003775345.1| RNA polymerase sigma-E factor (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63437.1| RNA polymerase sigma-E factor (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 357 bits (915), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK Sbjct: 26 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL Sbjct: 86 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW Sbjct: 146 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 200 >ref|YP_001353052.1| RNA polymerase sigma factor RpoE [Janthinobacterium sp. Marseille] gb|ABR88960.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium sp. Marseille] Length = 200 Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 161/175 (92%), Positives = 168/175 (96%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK Sbjct: 26 LVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLVT GRRAPTSTEAD EEAETFDD DHLRDINTPES+LATKQIAQT+N+AME LPEEL Sbjct: 86 NYLVTQGRRAPTSTEADVEEAETFDDGDHLRDINTPESLLATKQIAQTLNLAMEELPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 R AITLREIEGLSYDEIA++M CPIGTVRSRIFRAREAI+EKLRPLLDTA DKRW Sbjct: 146 RMAITLREIEGLSYDEIAESMGCPIGTVRSRIFRAREAISEKLRPLLDTALDKRW 200 >ref|YP_004753527.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] gb|AEK62704.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] Length = 200 Score = 332 bits (851), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 161/175 (92%), Positives = 168/175 (96%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK Sbjct: 26 LVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLVT GRRAPTSTEA++EEAETFDD + LRDINTPES+LATKQIAQTVN AMEALP EL Sbjct: 86 NYLVTQGRRAPTSTEANSEEAETFDDGEQLRDINTPESLLATKQIAQTVNTAMEALPAEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSYDEIA+AM CPIGTVRSRIFRAREAIA+KLRPLLDTA DKRW Sbjct: 146 RTAITLREIEGLSYDEIAEAMGCPIGTVRSRIFRAREAIADKLRPLLDTAIDKRW 200 >ref|ZP_08272632.1| RNA polymerase sigma factor RpoE [Oxalobacteraceae bacterium IMCC9480] gb|EGF33884.1| RNA polymerase sigma factor RpoE [Oxalobacteraceae bacterium IMCC9480] Length = 200 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 161/175 (92%), Positives = 169/175 (96%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQRKLMRLVSRLVRD AEAEDVVQEAFIKAYRALPQFRGD+AFYTWLYRIGINTAK Sbjct: 26 LVIKYQRKLMRLVSRLVRDHAEAEDVVQEAFIKAYRALPQFRGDAAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 N+LVT GRRAPTST+ADAEEAETF+DADHLRDINTPESMLATKQIA+TVNVAM ALPEEL Sbjct: 86 NFLVTQGRRAPTSTDADAEEAETFEDADHLRDINTPESMLATKQIAETVNVAMGALPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSYDEIADAM CPIGTVRSRIFRAREAIA++LRPLL TA DKRW Sbjct: 146 RTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRAREAIADRLRPLLGTAIDKRW 200 >ref|YP_001100336.1| RNA polymerase sigma factor RpoE [Herminiimonas arsenicoxydans] emb|CAL62213.1| RNA polymerase sigma-E factor (Sigma-24) [Herminiimonas arsenicoxydans] Length = 200 Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 160/175 (91%), Positives = 167/175 (95%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK Sbjct: 26 LVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLVT GRRAPTSTEAD EEAETFDD +HLRDINTPES+LATKQIAQT+N+AME LPEEL Sbjct: 86 NYLVTQGRRAPTSTEADIEEAETFDDGEHLRDINTPESLLATKQIAQTLNLAMEELPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 R AITLREIEGLSYDEIA +M CPIGTVRSRIFRAREAI+EKLRPLLDTA DKRW Sbjct: 146 RMAITLREIEGLSYDEIAVSMGCPIGTVRSRIFRAREAISEKLRPLLDTALDKRW 200 >ref|YP_003907758.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. CCGE1003] gb|ADN58467.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. CCGE1003] Length = 199 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 156/175 (89%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M+CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMSCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >ref|YP_559920.1| RNA polymerase sigma factor RpoE [Burkholderia xenovorans LB400] ref|ZP_02886560.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] ref|YP_001896524.1| RNA polymerase sigma factor RpoE [Burkholderia phytofirmans PsJN] ref|ZP_03266074.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] ref|YP_003605707.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. CCGE1002] ref|ZP_06841073.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. Ch1-1] ref|YP_004229019.1| ECF subfamily RNA polymerase sigma-24 subunit [Burkholderia sp. CCGE1001] gb|ABE31868.1| RNA polymerase, sigma-24 subunit, RpoE [Burkholderia xenovorans LB400] gb|EDT07789.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] gb|ACD17300.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phytofirmans PsJN] gb|EEA02376.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] gb|ADG16196.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. CCGE1002] gb|EFG71363.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. Ch1-1] gb|ADX55959.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. CCGE1001] Length = 199 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >ref|YP_001118892.1| RNA polymerase sigma factor RpoE [Burkholderia vietnamiensis G4] gb|ABO54057.1| RNA polymerase, sigma-24 subunit, RpoE [Burkholderia vietnamiensis G4] Length = 199 Score = 301 bits (770), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 R AITLREIEGLSY+EIA+ MNCPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RQAITLREIEGLSYEEIAEMMNCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >ref|YP_002910841.1| RNA polymerase sigma factor RpoE [Burkholderia glumae BGR1] gb|ACR28137.1| RNA polymerase sigma factor RpoE [Burkholderia glumae BGR1] Length = 199 Score = 301 bits (770), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 156/175 (89%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMALLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M+CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMDCPIGTVRSRIFRAREAIANKLRPLLDTPEGKRW 199 >ref|YP_001857069.1| RNA polymerase sigma factor RpoE [Burkholderia phymatum STM815] gb|ACC70023.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phymatum STM815] Length = 199 Score = 300 bits (769), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199