BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0107.p (585 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspiril... 1160 0.0 ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fu... 427 e-117 ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium v... 342 9e-92 ref|ZP_08504044.1| hypothetical protein METUNv1_01065 [Methylove... 340 5e-91 ref|YP_004237156.1| diguanylate cyclase [Acidovorax avenae subsp... 317 6e-84 ref|YP_973036.1| diguanylate cyclase [Acidovorax citrulli AAC00-... 316 7e-84 ref|ZP_06842593.1| diguanylate cyclase [Burkholderia sp. Ch1-1] ... 316 8e-84 ref|YP_552717.1| diguanylate cyclase [Burkholderia xenovorans LB... 313 8e-83 emb|CCA88996.1| conserved exported hypothetical protein, GGDEF d... 307 3e-81 ref|YP_003753370.1| hypothetical protein RPSI07_2743 [Ralstonia ... 303 8e-80 >ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63421.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 579/583 (99%), Positives = 581/583 (99%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER Sbjct: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 Query: 61 GPANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQA 120 GPANA+MGASASQREAVADKLKNARAETDAALAALRQALQSH RLRQSWSLDKVKTVQQA Sbjct: 61 GPANAFMGASASQREAVADKLKNARAETDAALAALRQALQSHPRLRQSWSLDKVKTVQQA 120 Query: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL Sbjct: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 Query: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMVSYV 240 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQM SYV Sbjct: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMASYV 240 Query: 241 QRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLRD 300 QRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLRD Sbjct: 241 QRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLRD 300 Query: 301 LLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLATDLVSGL 360 LLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLATDLVSGL Sbjct: 301 LLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLATDLVSGL 360 Query: 361 VEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTDFLTG 420 VEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTDFLTG Sbjct: 361 VEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTDFLTG 420 Query: 421 VLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGVAQSVSQ 480 VLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGVAQSVSQ Sbjct: 421 VLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGVAQSVSQ 480 Query: 481 LLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRVTASFGV 540 LLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRVTASFGV Sbjct: 481 LLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRVTASFGV 540 Query: 541 AAENGGPGLEHLIKQADIALYRAKKLGRNRVKLAGEEEGVEGA 583 AAENGGPGLEHLIKQADIALYRAKKLGRNRV+LAGEEEGVEGA Sbjct: 541 AAENGGPGLEHLIKQADIALYRAKKLGRNRVELAGEEEGVEGA 583 >ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331] gb|AEK60956.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331] Length = 590 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/578 (43%), Positives = 352/578 (60%), Gaps = 14/578 (2%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MSLNRLF LISI L+LLFL +V +EW Y S+PA+R +LAL+A EKL+AER Sbjct: 5 MSLNRLFWLISILLMLLFLVLIGRIVSSEWAVYERSTKSMPAIRNLQLALLAEEKLAAER 64 Query: 61 GPANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQA 120 GP N+ + L AR +D ALA+LR+ALQ A + + + V + +QA Sbjct: 65 GPGNSLLLQEPDAAAKEFAGLDQARFASDRALASLRRALQMQAVPQLAPVIAHVASTEQA 124 Query: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVD-------HAD 173 L R +D + P +R+ ++AV ++ M M R S + + +D Sbjct: 125 LATMRKEMDLLLALPVRQRD----VAAVDAVLQM---MARADSGFAPAIVALADVAVRSD 177 Query: 174 PELREGLAAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLN 233 P+L +GL A+SLR AG++G+ FT +IAHR LT E+ RL G I L + Sbjct: 178 PQLSDGLEGALLASSLRNIAGRIGAVFTAPVIAHRPLTSQEIYAFSRLSGEISQLYSGIE 237 Query: 234 TQMVSYVQRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMK 293 Q+ Y P AL+ V +Y G FL+ L G +SGDYGL++ ++ YVP+M Sbjct: 238 LQLRPYQDNPVLKAALDAVRDRYLGAGLGFLNELFAIGRSSGDYGLSAREMVVRYVPRMA 297 Query: 294 SITDLRDLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLA 353 +I LRDL+L +M++QA R NR+A +L+ + VA F +LM +IR RV++P++ A Sbjct: 298 AIPHLRDLVLAEMLQQARRQNRQAAFFLVAATVLGAVALAIFVLLMQVIRLRVLRPILDA 357 Query: 354 TDLVSGLVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSS 413 TDL L + R + IP PR++DEI MMR + VL+ + L ++RE +I QLQT S Sbjct: 358 TDLFVSLADERFNTVIPMPRHDDEIGVMMRVIHVLKAHSLAKVRLEKQREEMIAQLQTLS 417 Query: 414 NTDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRG 473 +TDFLTG+LNRRAFF G+QQ +A+RY R+L ++L D+DHFK +ND YGHQAGD +LR Sbjct: 418 DTDFLTGLLNRRAFFAQGEQQFGIAQRYRRQLTLILMDVDHFKTVNDRYGHQAGDQVLRV 477 Query: 474 VAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIR 533 VA + RKVD+LARYGGEEF+++LPE L Q AA+EKLR A+ + + ++DGG + Sbjct: 478 VADLCRRHHRKVDLLARYGGEEFLLMLPEIDLSQGFAAAEKLRCAIDSCDCQLDGGEIVN 537 Query: 534 VTASFGVAAENGGPGLEHLIKQADIALYRAKKLGRNRV 571 VTASFGV A LE LI +AD ALY+AK GRN V Sbjct: 538 VTASFGVVAFECDNDLESLIGRADQALYQAKHSGRNMV 575 >ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium violaceum ATCC 12472] gb|AAQ60916.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 573 Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 211/571 (36%), Positives = 318/571 (55%), Gaps = 8/571 (1%) Query: 5 RLFRLISIALLLLFLAFAVSLVWT---EWNSYRNGANSVPALRTFRLALVALEKLSAERG 61 RL ++ ++ L+LF+ + L W EW YR + +++ LA+VA+EK+S ERG Sbjct: 2 RLSKIFTVVTLVLFVLACLPLAWIVNGEWAVYRAADEGLASIQIAHLAMVAVEKISFERG 61 Query: 62 PANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQAL 121 PAN +G+ A Q ++L+ AR +D AL L AL + +L V++ +Q L Sbjct: 62 PANVLIGSPADQD--ARERLRRARQTSDRALQDLVSALSPSSSAYHRQALAAVRSARQRL 119 Query: 122 EPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGLA 181 AR +DR+ P + ++ ++ M D++P ++ + LSS+ P+L L+ Sbjct: 120 SEARLGMDRVIASPRPA--SAGIMPSIRRMFDVVPAILEAVTALSSQASSVYPQLSHPLS 177 Query: 182 AIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMVSYVQ 241 R A LREYAG++GS TPAL R L + E +I L GRIE LRG + ++ + Sbjct: 178 GARMATELREYAGRLGSTLTPALAEQRPLAESETRDIHILRGRIEQLRGTILQRLNAPSL 237 Query: 242 RPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLRDL 301 +P +A+ ++ YF G +D +L Y ++ + YVP + SI +LRD Sbjct: 238 QPGPRQAVGDMESLYFREGLAQVDDILLDSHLGRPYRVSLAEFTAGYVPTLYSIVELRDA 297 Query: 302 LLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLATDLVSGLV 361 +L E+A A +LL IA+ VVA + L IR + +PL+ A+ L+S L Sbjct: 298 MLTAAAEEARVQRSAAFRHLLGTIALGVVALIAQLALFAYIRWLIARPLLAASRLLSDLA 357 Query: 362 EGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTDFLTGV 421 +G+LD +IP +DEI ++RA+ +LR+ +E+ +L ER+ LI +L S DFLTG+ Sbjct: 358 DGKLDADIPDSHRKDEIGDVLRAIAILRRNSQEKRALEHERQRLIDELTEMSRIDFLTGI 417 Query: 422 LNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGVAQSVSQL 481 NRRAF ++ A ++LFDIDHFKQ+ND YGH GDA+L VA V ++ Sbjct: 418 TNRRAFTQAAHAEIARAGLARESATLILFDIDHFKQVNDLYGHDCGDAVLVHVAAIVERV 477 Query: 482 LRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRVTASFGVA 541 R+ D+ RYGGEEF++L A +E+LRAA+A + G+++ VTASFGVA Sbjct: 478 CREGDLAGRYGGEEFVVLACYRGASNGEALAERLRAAIAESPCLLPSGQKLAVTASFGVA 537 Query: 542 A-ENGGPGLEHLIKQADIALYRAKKLGRNRV 571 P LE L++ AD ALY AK+LGRNRV Sbjct: 538 TLGEAAPSLERLLQAADRALYAAKRLGRNRV 568 >ref|ZP_08504044.1| hypothetical protein METUNv1_01065 [Methyloversatilis universalis FAM5] gb|EGK72655.1| hypothetical protein METUNv1_01065 [Methyloversatilis universalis FAM5] Length = 578 Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 218/575 (37%), Positives = 321/575 (55%), Gaps = 7/575 (1%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 M L+RLF L+ + L + L + +V EW + A+ R LVA E S ER Sbjct: 1 MRLHRLFWLVCLLLAVTVLVLSAHIVALEWERADRATRGLEAIERLRHMLVAAEMASRER 60 Query: 61 GPANAYMGASASQREAVA-DKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQ 119 GP+N MG +AV +L ARA TDAA + L+QAL + R S V+ + Sbjct: 61 GPSNGLMGDITPGGDAVRLARLDEARARTDAAFSTLQQALDASGHRRDDVSA-AVREAAR 119 Query: 120 ALEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREG 179 L R I RI QP +ER + +A+G M +I + L +E A P + Sbjct: 120 DLSAGRGEISRIALQPRSERRADDIKAAIGRMFQVIEDLSPGLMHLMNEAQAAYPRASDA 179 Query: 180 LAAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMVSY 239 L+ R AA LRE AG++GS+FT AL A + L E EI RL GR+E LR LL + + Sbjct: 180 LSGARLAAELREQAGRLGSQFTVALTARQPLRDSERTEIERLRGRVEQLRQLLVQRTAAA 239 Query: 240 VQRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLR 299 +R A + + +YF + F++ L G + G+Y + + YVP M +I +LR Sbjct: 240 PERTAVHGATQRMLVRYFGSAMPFVEALTVRGRSDGEYDIDAAGFAARYVPDMDAIIELR 299 Query: 300 DLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLATDLVSG 359 D+LL+ + +A AR L+ + + A + + ++ RVV+PL T+L+ Sbjct: 300 DVLLEQALTEARVGAAEARTALVWISGGGLAALGLLGLTLWVVHHRVVRPLEETTELIVA 359 Query: 360 LVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTDFLT 419 + G L++ +P PR+ DE++ +++A+ VLR+ R +L ER+ L+ QL+ SNTDFLT Sbjct: 360 IACGDLERTVPVPRHRDEVADVLKAIGVLRENSVARRALEDERQRLVEQLRDQSNTDFLT 419 Query: 420 GVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGVAQSVS 479 G+ NRR FFT ++ + +R+G +A+ LFDIDHFKQ+NDS+GH GD +L VA+ Sbjct: 420 GLPNRRGFFTLAERHLPNLQRHGYPVAIALFDIDHFKQVNDSWGHAVGDVVLGEVARCCQ 479 Query: 480 QLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRVTASFG 539 Q R+ DV+ARYGGEEFI+L+P L A A +E+LR A+ + + ++VTASFG Sbjct: 480 QHSRRGDVIARYGGEEFILLMPHCDLASATAQAERLRVAIESTVMQAGDAGGLKVTASFG 539 Query: 540 VAA---ENGGPGLEHLIKQADIALYRAKKLGRNRV 571 VA E+ L+ +I +AD LYRAK+ GRNRV Sbjct: 540 VAECLLEDD--TLDPVIARADACLYRAKREGRNRV 572 >ref|YP_004237156.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX48589.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 579 Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 219/585 (37%), Positives = 313/585 (53%), Gaps = 18/585 (3%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MSLN RLI I L + A W +W S+R AL L LVA E++S ER Sbjct: 1 MSLNHFLRLIGIVLATVTALLAAHASWGQWRSWRAADAGSRALADLGLGLVATERVSRER 60 Query: 61 GPANAYMGA--SASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSL-----DK 113 GP NA +GA A +AVA L AR T A+A LR L + +L +L D Sbjct: 61 GPTNARLGALDGAPDPQAVA-ALARARESTGQAMAQLRAMLAARTQLPHMDALLAGADDT 119 Query: 114 VKTVQQALEPARAAID--RIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDH 171 + + +A A A I R PEA R +VY L+A+ +P V S L V Sbjct: 120 AQALARARAAADAVISLPHAQRTPEAVRASVYGLAAI------VPRFAPVNSALIQAVRT 173 Query: 172 ADPELREGLAAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGL 231 A P + +R A LRE+AG +GS FT AL R T +E I + GRI L+ L Sbjct: 174 AQPSMDGDTQMLRITAELREHAGLLGSHFTAALAKQRPFTPEERHAIEQTRGRIMALQFL 233 Query: 232 LNTQMVSYVQRPEFARALELVDKQYFDNGFQ-FLDFLLQTGVASGDYGLTSVDLFRFYVP 290 L ++ P+ A+A E VD YF + + + +L G G YG+T+ YVP Sbjct: 234 LEQRLARQDAPPDIAQAWEAVDSGYFGHAARDIVAPVLAAGERDGRYGITAAQFAERYVP 293 Query: 291 QMKSITDLRDLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPL 350 ++ + LRD L+ + A RA + L+ V + + + ++ RV++PL Sbjct: 294 ELGKVVALRDRLMARLQADALAARERALHSLVEVAGASALLWAILAGTLAMLHARVLRPL 353 Query: 351 VLATDLVSGLVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQ 410 T + L RLD +P+P +DEI+A++ A++ L++ + R L RER+ LI QL+ Sbjct: 354 AQTTRALQDLARNRLDAPLPRPAADDEIAAVIGAVRALQEHTQARQVLERERDGLIAQLR 413 Query: 411 TSSNTDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAI 470 S TDFLTG+ NRRAFF ++++ A++ ++A++L D+D FK ND GH AGD Sbjct: 414 EQSLTDFLTGLPNRRAFFAAARERVAQARQQRFDVALMLLDVDLFKSFNDRAGHAAGDEA 473 Query: 471 LRGVAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGR 530 LR VA++V LR D++ARYGGEEF++LL + + AA +E+LR A+ + G Sbjct: 474 LRAVARAVRNTLRPGDLVARYGGEEFVVLLGPCAGPEGAACAERLRHAIETAPVILPSGE 533 Query: 531 RIRVTASFGVA-AENGGPGLEHLIKQADIALYRAKKLGRNRVKLA 574 R R+TAS GVA ++ G L+HL+ +AD ALYRAK GRNRV+ A Sbjct: 534 RFRLTASVGVAVSQRHGLVLDHLLSEADTALYRAKDRGRNRVEEA 578 >ref|YP_973036.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gb|ABM35262.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 572 Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 210/583 (36%), Positives = 306/583 (52%), Gaps = 21/583 (3%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MSLN+ RLI I L + A W +W S+R AL L +VA E++S ER Sbjct: 1 MSLNQFLRLIGIVLATVTALLAAHASWGQWRSWRAADAGSRALADLGLGMVATERVSRER 60 Query: 61 GPANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQA 120 GP + A +AVA L AR TD A+A LR L + ++ +L Sbjct: 61 GPLD-----GAPDPQAVA-ALARARESTDQAMAQLRAMLAARTQVPHLDALLAGADDAAQ 114 Query: 121 LEPARA-------AIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHAD 173 A+ R PEA R +VY L+A+ +P + + S L V A Sbjct: 115 ALARARAVADGVIALPHAQRTPEAVRASVYGLAAI------VPRLAPINSALIQTVRTAQ 168 Query: 174 PELREGLAAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLN 233 P + +R A LRE+AG +GS FT AL+ R T +E I + GRI L+ LL Sbjct: 169 PSMDGDTQVLRITAELREHAGLLGSHFTAALVMQRPFTPEERHAIEQTRGRITALQFLLE 228 Query: 234 TQMVSYVQRPEFARALELVDKQYFDNGFQ-FLDFLLQTGVASGDYGLTSVDLFRFYVPQM 292 ++ P+ A+A E VD YF + + + +L G G YG+T+ YVP++ Sbjct: 229 QRLARQDAPPDIAQAWEAVDSGYFGHAMRDIVAPVLAAGERDGRYGITAAQFAEGYVPEL 288 Query: 293 KSITDLRDLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVL 352 + LRD L+ + A RA + L+ V + + + + RV+QPL Sbjct: 289 GKVVTLRDRLMARLQADALAARERALHSLMEVAGASALLWAILAGTLATLHARVLQPLAQ 348 Query: 353 ATDLVSGLVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTS 412 T + L RLD +P+P +DEI+A++ A++ L++ + R L RER+ LI QL+ Sbjct: 349 TTQALQDLARNRLDAPLPRPAADDEIAAVIGAVRALQEHTQARQVLERERDGLIAQLREQ 408 Query: 413 SNTDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILR 472 S TDFLTG+ NRRAFF ++++ A++ ++A++L D+D FK ND GH AGD LR Sbjct: 409 SLTDFLTGLPNRRAFFAAARERIAQARQQRFDVALMLLDVDLFKSFNDRAGHAAGDEALR 468 Query: 473 GVAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRI 532 VA++V LR D++ARYGGEEF++LL + + AA +E+LR A+ + G R Sbjct: 469 AVARAVRHTLRPGDLVARYGGEEFVVLLGPCAGREGAACAERLRHAIETAPVVLPSGERF 528 Query: 533 RVTASFGVA-AENGGPGLEHLIKQADIALYRAKKLGRNRVKLA 574 R+TAS GVA ++ G L+HL+ +AD ALYRAK GRNRV+ A Sbjct: 529 RLTASVGVAVSQRHGMVLDHLLSEADTALYRAKDRGRNRVEEA 571 >ref|ZP_06842593.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gb|EFG69781.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 591 Score = 316 bits (809), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 210/579 (36%), Positives = 315/579 (54%), Gaps = 16/579 (2%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MS++R F + LL L LV EW++Y ++ A +T+R L+A+E +SAER Sbjct: 9 MSIDRRFSISVAVALLPVLVLCGRLVVHEWHAYMVADGALYAFQTYRAGLLAIESVSAER 68 Query: 61 GPANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQA 120 GP N+ +G EA L+ AR E+DA + L + LQ+ + L +++ + Sbjct: 69 GPTNSVLGEDLPIPEARRVSLRRARDESDARIEKLLEMLQAGRCPGCAVELARIQEARND 128 Query: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 L AR +D++ P A+R + +AV M+ +IP L++ V D L Sbjct: 129 LASARENVDQLIGLPLAQRRERTLSNAVDRMIKVIPQFAPAIDALAANVVKGDTRALNCL 188 Query: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMVSYV 240 A LRE AGQ+GS FT L AHR L +D + I R GRI+ LR L+++ + Sbjct: 189 ILATLTADLREAAGQLGSHFTATLTAHRTLGEDNQLVIERTEGRIDQLRELIDSHVR--- 245 Query: 241 QRPEF-ARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLR 299 RP + A + +++QYF G ++ + G ++ L YVP M+ IT R Sbjct: 246 DRPTLESTAFDKMNRQYFGEGIAYIAEVRSLASRPGGVAISPAQLADRYVPMMRPITAFR 305 Query: 300 DLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLM---VLIRRRVVQPLVLATDL 356 D +LD + E H+R N L L+ + A L +L+ +L RRRV++PLV AT + Sbjct: 306 DQVLD-LAETEIGHHRS--NALGLLAVSGLAAFLLIAILLSMAMLFRRRVIRPLVDATHV 362 Query: 357 VSGLVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTD 416 + + G L EIP RY EI AM A+ VL+ ER L RER LI +L+ ++ TD Sbjct: 363 IGAIANGDLTAEIPAARYRGEIKAMFNAIGVLKANSVERQQLERERGRLIHELKATAETD 422 Query: 417 FLTGVLNRRAFFTHGQQQMTVAKRYGRE--LAVVLFDIDHFKQINDSYGHQAGDAILRGV 474 FLT +LNRRAF + +++ A+R E LA+++FDIDHFK+IND+YGH GD L+ V Sbjct: 423 FLTHLLNRRAF--ESRARLSCAERNAAEPELALIMFDIDHFKKINDTYGHATGDHALQLV 480 Query: 475 AQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRV 534 A+ ++ R+ DV+AR+GGEEF +L QA A +E+LR ++ GG + Sbjct: 481 ARLCREICRQSDVVARWGGEEFAVLSRVQDAAQALAVAERLRRRISETRIPFSGGEGFTI 540 Query: 535 TASFGVAAENGGPG--LEHLIKQADIALYRAKKLGRNRV 571 TASFGVA + ++ L ++AD LY+AK+ GR+R+ Sbjct: 541 TASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRI 579 >ref|YP_552717.1| diguanylate cyclase [Burkholderia xenovorans LB400] gb|ABE33367.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 591 Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 212/581 (36%), Positives = 319/581 (54%), Gaps = 20/581 (3%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MS++R F + A LL L LV EW++Y +++ A +T+R L+A+E +SAER Sbjct: 9 MSIDRRFGISVAAALLPVLLLCGRLVVHEWHAYMVADDALYAFQTYRAGLLAIESVSAER 68 Query: 61 GPANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQA 120 GP N+ +G + EA L AR E+DA + L + LQS + L +++ + Sbjct: 69 GPTNSVLGENLPIPEARRASLLRARGESDARIEKLLEMLQSSRCPGCATELARIENARAE 128 Query: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 L ARA +D++ P A+R + SAV M+ +IP V L++ V D L Sbjct: 129 LTGARANVDQLIGLPLAQRRERALSSAVDRMIKVIPQFSPVIDALAANVVRGDTRALNCL 188 Query: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMV--S 238 A LRE AGQ+GS FT AL A R L + + + I R GRI+ LR L+++ + S Sbjct: 189 ILATLTADLREAAGQLGSHFTAALTARRALGEGDQLAIERTEGRIDQLRELIDSHIRDRS 248 Query: 239 YVQRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDL 298 ++ F R +++QYF G ++ + G ++ L YVP M+ IT Sbjct: 249 MLESAPFDR----MNRQYFGEGMAYITDVRSLATRPGGVAISPAQLADHYVPMMRPITAF 304 Query: 299 RDLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLM----VLIRRRVVQPLVLAT 354 RD +LD A+ R R+ L ++AV+ +A +++ +L RRRV++PLV AT Sbjct: 305 RDQVLD----LADTEIRFHRSNALGLLAVSALAAFLLIMILLSMAMLFRRRVIRPLVDAT 360 Query: 355 DLVSGLVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSN 414 ++ + G L EIP RY EI AM A+ VL+ ER L RER LI +L+ ++ Sbjct: 361 HVIGAIANGDLTAEIPAARYRGEIKAMFNAIGVLKANSVERQQLERERGRLIQELKATAE 420 Query: 415 TDFLTGVLNRRAFFTHGQQQMTVAKRYGRE--LAVVLFDIDHFKQINDSYGHQAGDAILR 472 TDFLT +LNRRAF + +++ A+R E LA+++FDIDHFK+IND+YGH GD L+ Sbjct: 421 TDFLTHLLNRRAF--ESRARLSCAERNAAEPELALIMFDIDHFKKINDTYGHATGDHALQ 478 Query: 473 GVAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRI 532 VA+ + R+ DV+AR+GGEEF +L QA A +E+LR + + GG Sbjct: 479 LVARLCRETCRQADVVARWGGEEFAVLSRVQDAAQALAVAERLRCRIRETRIPVSGGDGF 538 Query: 533 RVTASFGVAAENGGPG--LEHLIKQADIALYRAKKLGRNRV 571 +TASFGVA + ++ L ++AD LY+AK+ GR+R+ Sbjct: 539 NITASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRI 579 >emb|CCA88996.1| conserved exported hypothetical protein, GGDEF domain [Ralstonia syzygii R24] Length = 592 Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 212/593 (35%), Positives = 314/593 (52%), Gaps = 17/593 (2%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MSL++ F LI+ ++L+ L + L+ EW +Y +++ + R+ R AL+A+EK+SAER Sbjct: 1 MSLDKRFGLIAASILIPILLLSCWLLAYEWLAYLRADDALCSFRSLRAALLAIEKVSAER 60 Query: 61 GPANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQA 120 P N +G A + L AR ++D LA L L+ + LD + +Q Sbjct: 61 RPTNGVLGEDAPVPASHRTALLRARQDSDGHLAQLLDILRPEHCPGCAADLDTARHLQAG 120 Query: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 L ARA +D++ P A+R + V AV M+ +IP + + +S V H D + L Sbjct: 121 LAAARANVDQLIGLPLAQRGDTAVQDAVHRMIAVIPEFHPIVTARTSSVAHGDADALNCL 180 Query: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMVSY- 239 R AA LRE AGQ+GSRFT AL R L E + I R GRI+ LR ++++++ ++ Sbjct: 181 FLARLAADLREQAGQLGSRFTGALAMRRGLADHERLAIERTRGRIDQLRAMIDSRLANHA 240 Query: 240 -VQRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDL 298 + FAR ++ +YFD+G +++D + G +++ + YVP M++IT Sbjct: 241 GLSPTAFAR----LNAEYFDDGLRYVDAVQALAGQPGGVKISTTEFAEHYVPTMRAITGF 296 Query: 299 RDLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLI----RRRVVQPLVLAT 354 RD +L AE R R LLV+A T +A + + I RR VV P AT Sbjct: 297 RDSVLG----LAEGEIRAHRQTTLLVLAGTALAEVLLLAALAWIIASFRRHVVGPFAQAT 352 Query: 355 DLVSGLVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSN 414 ++ + G L Q IP E AM +AL+VLR ER L ER L+ +L T + Sbjct: 353 RIIDAIAGGDLSQPIPAASAHRETRAMFKALQVLRVNSLERMRLEHERARLMEELATMAE 412 Query: 415 TDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGV 474 TD LT +LNRRAF T + + +A+++FD+DHFK+IND+YGH AGD LR V Sbjct: 413 TDSLTQLLNRRAFETRARAMCEARGTEAQRIALIMFDVDHFKRINDTYGHAAGDEALRTV 472 Query: 475 AQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRV 534 A + R+ D++AR GGEEF ++ + A +E++R A+A + Sbjct: 473 ADLCREHWRQSDIVARIGGEEFAVVALVDTAAHARVLAERMRQAIAGARVPAGSAPEHGM 532 Query: 535 TASFGVAAEN--GGPGLEHLIKQADIALYRAKKLGRNRVKLAGEEEGVEGAPS 585 TASFGVA + P LE L+++AD LY+AK GRNRV LA E PS Sbjct: 533 TASFGVAVASVADAPELEALLRRADHLLYQAKLAGRNRV-LADEAPPSPERPS 584 >ref|YP_003753370.1| hypothetical protein RPSI07_2743 [Ralstonia solanacearum PSI07] emb|CBJ52108.2| conserved exported protein of unknown function, GGDEF domain [Ralstonia solanacearum PSI07] Length = 592 Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 206/579 (35%), Positives = 307/579 (53%), Gaps = 16/579 (2%) Query: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 MSL++ F LI+ ++L+ L + L+ EW +Y +++ + R+ R AL A+EK+SAER Sbjct: 1 MSLDKRFGLIAASILIPILLLSCWLLAYEWLAYLRADDALRSFRSLRAALQAMEKVSAER 60 Query: 61 GPANAYMGASASQREAVADKLKNARAETDAALAALRQALQSHARLRQSWSLDKVKTVQQA 120 P N +G A + L AR ++D LA L L+ + LD + +Q Sbjct: 61 RPTNGVLGEDAPVAASHQTALLRARQDSDGHLAQLLDILRPEHCPGCAADLDTARHLQAG 120 Query: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 L ARA +D++ P A+R + V AV M+ +IP + + +S V H D + L Sbjct: 121 LAAARANVDQLIGLPLAQRGDTAVQDAVHRMIAVIPEFHPIVTARTSSVAHGDADALNCL 180 Query: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMVSY- 239 R AA LRE AGQ+GSRFT AL R L E + I R GRI+ LR ++++++ ++ Sbjct: 181 ILARLAADLREQAGQLGSRFTGALAMRRGLADHERLAIERTRGRIDQLRAMIDSRLANHA 240 Query: 240 -VQRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDL 298 + FA+ ++ +YFD+G +++D + G +++ + YVP M++IT Sbjct: 241 GLSPAAFAQ----LNAEYFDDGLRYVDAVQALAGRPGGVKISTTEFAEHYVPTMRAITGF 296 Query: 299 RDLLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLI----RRRVVQPLVLAT 354 RD +L AE R R LLV+A T +A + + I RR VV P AT Sbjct: 297 RDSVLG----LAEGEIRAHRQTTLLVLAGTALAEVLLLAALAWIIASFRRHVVGPFAQAT 352 Query: 355 DLVSGLVEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSN 414 ++ + G L Q IP E AM +AL+VLR ER L ER L+ +L T + Sbjct: 353 RIIDAIAGGDLSQPIPAASAHRETRAMFKALQVLRVNSLERMRLEHERARLMEELATMAE 412 Query: 415 TDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGV 474 TD LT +LNRRAF T + + +A+++FD+DHFK+IND+YGH AGD LR V Sbjct: 413 TDSLTQLLNRRAFETRARAMCEARGTEAQRIALIMFDVDHFKRINDTYGHAAGDEALRTV 472 Query: 475 AQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRV 534 A R+ D++AR GGEEF ++ + A +E++R A+A + Sbjct: 473 ADLCRAHWRQSDIVARIGGEEFAVVALVDTATHARVLAERMRQAIAGARVPAGSAPEHGM 532 Query: 535 TASFGVAAEN--GGPGLEHLIKQADIALYRAKKLGRNRV 571 TASFGVA + P LE L+++AD LY+AK GRNRV Sbjct: 533 TASFGVAVASVADAPELEALLRRADHLLYQAKLAGRNRV 571