BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0094.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775316.1| DNA repair photolyase [Herbaspirillum serope... 839 0.0 ref|YP_004753370.1| Radical SAM domain-containing protein [Colli... 532 e-149 ref|ZP_06841141.1| Radical SAM domain protein [Burkholderia sp. ... 508 e-142 ref|YP_559996.1| hypothetical protein Bxe_A1003 [Burkholderia xe... 506 e-141 ref|YP_003907823.1| Radical SAM domain-containing protein [Burkh... 505 e-141 ref|YP_001896598.1| radical SAM protein [Burkholderia phytofirma... 502 e-140 ref|ZP_02884898.1| Radical SAM domain protein [Burkholderia gram... 501 e-140 ref|YP_004229086.1| radical SAM protein [Burkholderia sp. CCGE10... 499 e-139 ref|YP_412310.1| radical SAM family protein [Nitrosospira multif... 497 e-138 ref|YP_003605780.1| Radical SAM domain protein [Burkholderia sp.... 496 e-138 >ref|YP_003775316.1| DNA repair photolyase [Herbaspirillum seropedicae SmR1] gb|ADJ63408.1| DNA repair photolyase protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/417 (98%), Positives = 412/417 (98%) Query: 1 VASFPKFPQGIAQPFPIQPTPTAEDDPTLTPATFIHRSQVAKKGRGAVTNLRGRYEQVSR 60 +ASFPKFPQGIAQPFP QP PTAEDDPTLTPATFIHRSQVA+KGRGAVTNLRGRYE VSR Sbjct: 1 MASFPKFPQGIAQPFPTQPAPTAEDDPTLTPATFIHRSQVAQKGRGAVTNLRGRYESVSR 60 Query: 61 EEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETAKSIISRNTSPDLPFSLSLNPY 120 EEFDDGWQPMRWAE EGAAALEQDEEPARLKTIVTEETAKSIISRNTSPDLPFSLSLNPY Sbjct: 61 EEFDDGWQPMRWAEGEGAAALEQDEEPARLKTIVTEETAKSIISRNTSPDLPFSLSLNPY 120 Query: 121 RGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGIN 180 RGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGIN Sbjct: 121 RGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGIN 180 Query: 181 TDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTIT 240 TDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTIT Sbjct: 181 TDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTIT 240 Query: 241 TLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEA 300 TLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEA Sbjct: 241 TLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEA 300 Query: 301 GARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGTG 360 GARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGTG Sbjct: 301 GARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGTG 360 Query: 361 VWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQWAPQAPRQPARSDGQMDLF 417 VWADLLQQRFEKASR LGIHHRNRAFATLDASCFKRPQWAPQAPRQPARSDGQMDLF Sbjct: 361 VWADLLQQRFEKASRRLGIHHRNRAFATLDASCFKRPQWAPQAPRQPARSDGQMDLF 417 >ref|YP_004753370.1| Radical SAM domain-containing protein [Collimonas fungivorans Ter331] gb|AEK62547.1| Radical SAM domain protein [Collimonas fungivorans Ter331] Length = 401 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 272/378 (71%), Positives = 312/378 (82%), Gaps = 16/378 (4%) Query: 40 VAKKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETA 99 VA+KGRGA +N++GR+E REEFDDGW AA ++ +EPA L+TIVTEE A Sbjct: 40 VARKGRGATSNMQGRFEVAQREEFDDGW-----------AAEDELDEPAALRTIVTEEQA 88 Query: 100 KSIISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPE 159 KSI+SRN SPDLPF++SLNPYRGCEHGCIYCFARP+HSYLGLSPGLDFESR+ AK NAPE Sbjct: 89 KSILSRNASPDLPFNVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIFAKVNAPE 148 Query: 160 LLLRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIER 219 LL RELA+PSY ++I +GINTDAYQP ER LTRRILQ+LHDCE+P+A+ITKS+LIER Sbjct: 149 LLQRELARPSYVAESIALGINTDAYQPCERGLLLTRRILQVLHDCEHPLALITKSSLIER 208 Query: 220 DIDLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIA 279 DIDLLAAMAAK QA+ AVTI TLD IARTLEPRAA+PARRLR IRTLAEAGIPVSVS+A Sbjct: 209 DIDLLAAMAAKRQAVAAVTIATLDATIARTLEPRAATPARRLRTIRTLAEAGIPVSVSVA 268 Query: 280 PVIPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRI 339 P+IPF+TEPD+ERV+EAA EAGA +AGY VLRLPWEV+PLF+ WLQAHFP+RA RVMNRI Sbjct: 269 PMIPFITEPDMERVIEAAAEAGAVRAGYTVLRLPWEVNPLFKNWLQAHFPERANRVMNRI 328 Query: 340 QDMRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQW 399 ++MRGG DYDADFATRMRG GVWADLL+QRFEKA G+ H +F TLD S FKRP Sbjct: 329 REMRGGADYDADFATRMRGEGVWADLLRQRFEKAVLRFGMTH-GGSFGTLDTSRFKRPYV 387 Query: 400 APQAPRQPARSDGQMDLF 417 P+ R GQM LF Sbjct: 388 QPEKDRL----SGQMGLF 401 >ref|ZP_06841141.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] gb|EFG71431.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] Length = 381 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/376 (65%), Positives = 298/376 (79%), Gaps = 14/376 (3%) Query: 42 KKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETAKS 101 +KGRGAVTNL+GRYE RE DDGW E+D+EP L+T V EE AK+ Sbjct: 20 RKGRGAVTNLQGRYEVDQREAVDDGW----------LLPAEEDDEPKVLRTQVFEERAKT 69 Query: 102 IISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELL 161 I++RN SPD+PF +SLNPYRGCEHGCIYCFARP+HSYLGLSPGLDFESR+ AK NAPELL Sbjct: 70 ILTRNASPDIPFGVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKVNAPELL 129 Query: 162 LRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDI 221 REL+K SY P+ I +G+NTDA+QP ER+ QLTR ++++L + +P A ITKS+LIERD+ Sbjct: 130 ERELSKKSYVPEPIALGVNTDAWQPAERDLQLTRHVIEVLSERHHPFAAITKSSLIERDL 189 Query: 222 DLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPV 281 DLLA MAA+ Q + A+TITTLD IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPV Sbjct: 190 DLLAPMAARGQFMAAITITTLDAGIARTLEPRAATPSRRLRTIRTLSEAGIPVGVSIAPV 249 Query: 282 IPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQD 341 IPFVTEPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVM R++D Sbjct: 250 IPFVTEPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLSAHFPDRAERVMGRVRD 309 Query: 342 MRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQWAP 401 MRGGKDYD+ F+TRM+G G+WADLL+QRF KA R LG++ R+R LD S F+R + P Sbjct: 310 MRGGKDYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNQRDRGI--LDMSHFRRVE--P 365 Query: 402 QAPRQPARSDGQMDLF 417 QPAR+D Q+DLF Sbjct: 366 SRANQPARNDSQLDLF 381 >ref|YP_559996.1| hypothetical protein Bxe_A1003 [Burkholderia xenovorans LB400] gb|ABE31944.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 381 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/376 (65%), Positives = 299/376 (79%), Gaps = 14/376 (3%) Query: 42 KKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETAKS 101 +KGRGAVTNL+GRYE RE DDGW + E D+EP L+T V EE AK+ Sbjct: 20 RKGRGAVTNLQGRYEVDQREAIDDGWLSL----------AEDDDEPKVLRTQVFEERAKT 69 Query: 102 IISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELL 161 I++RN SPD+PF +SLNPYRGCEHGCIYCFARP+HSYLGLSPGLDFESR+ AK NAPELL Sbjct: 70 ILTRNASPDIPFGVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKVNAPELL 129 Query: 162 LRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDI 221 REL+K SY P+ I +G+NTDA+QP ER+ QLTRR++++L + +P A ITKS+LIERD+ Sbjct: 130 ERELSKKSYVPEPIALGVNTDAWQPAERDLQLTRRVIEVLSERHHPFAAITKSSLIERDL 189 Query: 222 DLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPV 281 DLLA MAA+ Q + A+TITTLD IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPV Sbjct: 190 DLLAPMAARGQFMAAITITTLDAGIARTLEPRAATPSRRLRTIRTLSEAGIPVGVSIAPV 249 Query: 282 IPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQD 341 IPFVTEPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL A+FPDRA RVM R++D Sbjct: 250 IPFVTEPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLAAYFPDRAERVMGRVRD 309 Query: 342 MRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQWAP 401 MRGGKDYD+ F+TRM+G G+WADLL+QRF KA R LG++ R+R LD S F+R + P Sbjct: 310 MRGGKDYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNRRDRGI--LDMSHFRRIE--P 365 Query: 402 QAPRQPARSDGQMDLF 417 QPAR+D Q+DLF Sbjct: 366 PRAGQPARNDSQLDLF 381 >ref|YP_003907823.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003] gb|ADN58532.1| Radical SAM domain protein [Burkholderia sp. CCGE1003] Length = 381 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 252/378 (66%), Positives = 301/378 (79%), Gaps = 18/378 (4%) Query: 42 KKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETAKS 101 +KGRGAVTNL+GRYE RE DDGW A E+DE P L+T V EE AKS Sbjct: 20 RKGRGAVTNLQGRYEVDQREAVDDGW----------VAVPEEDEAPKVLRTQVFEERAKS 69 Query: 102 IISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELL 161 I++RNTSPD+PF +SLNPYRGCEHGCIYCFARP+HSYLGLSPGLDFESR+ AK NAPELL Sbjct: 70 ILTRNTSPDIPFGVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKVNAPELL 129 Query: 162 LRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDI 221 REL+K SY+P+ I +G+NTDA+QP ER+ +LTRR++++L + +P A ITKS+LIERD+ Sbjct: 130 ERELSKKSYEPEPIALGVNTDAWQPAERDWRLTRRVVEVLSERNHPFAAITKSSLIERDL 189 Query: 222 DLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPV 281 DLLA MAA+ Q + A+TITTLDP IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPV Sbjct: 190 DLLAPMAARGQFMAAITITTLDPDIARTLEPRAATPSRRLRTIRTLSEAGIPVGVSIAPV 249 Query: 282 IPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQD 341 IPFVTEPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVM R++D Sbjct: 250 IPFVTEPDMERVLEACAEAGACNASYIVLRLPWEVAPLFKDWLSAHFPDRAERVMARVRD 309 Query: 342 MRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQWAP 401 MRGGKDYD+ F+TRM+G G+WADLL+QRF KA R LG++ R+R LD S F+R Sbjct: 310 MRGGKDYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNQRDRGI--LDMSHFRR----E 363 Query: 402 QAPRQPARSDG--QMDLF 417 QAPR A + G Q+DLF Sbjct: 364 QAPRVEAANRGSPQLDLF 381 >ref|YP_001896598.1| radical SAM protein [Burkholderia phytofirmans PsJN] gb|ACD17374.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN] Length = 381 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/376 (65%), Positives = 304/376 (80%), Gaps = 14/376 (3%) Query: 42 KKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETAKS 101 +KGRGAVTNL+GRYE RE DDGW +A E+ +EP L+T V EE AK+ Sbjct: 20 RKGRGAVTNLQGRYEVDQREAVDDGW----------LSAPEEGDEPKVLRTQVFEERAKT 69 Query: 102 IISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELL 161 I++RN SPD+PFS+SLNPYRGCEHGCIYCFARP+H+YLGLSPGLDFESR+ AK NAPELL Sbjct: 70 ILTRNASPDIPFSVSLNPYRGCEHGCIYCFARPTHAYLGLSPGLDFESRIYAKINAPELL 129 Query: 162 LRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDI 221 REL+K SY P+ I +G+NTDA+QP+ER+ +LTRR++++L + ++P A ITKS+LIERD+ Sbjct: 130 ERELSKKSYVPEPIALGVNTDAWQPVERDLRLTRRVIEVLSERQHPFAAITKSSLIERDL 189 Query: 222 DLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPV 281 DLLA MAA+ Q + A+TITTLD IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPV Sbjct: 190 DLLAPMAARGQFMAAITITTLDAEIARTLEPRAATPSRRLRAIRTLSEAGIPVGVSIAPV 249 Query: 282 IPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQD 341 IPFVTEPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVM+R++D Sbjct: 250 IPFVTEPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLAAHFPDRADRVMSRVRD 309 Query: 342 MRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQWAP 401 MRGGKDYD+ F+TRM+G G+WADLL+QRF KA R LG++ R+R LD S F RP P Sbjct: 310 MRGGKDYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNRRDRGI--LDMSHF-RPVDVP 366 Query: 402 QAPRQPARSDGQMDLF 417 +A + PAR D Q++LF Sbjct: 367 RADK-PARDDPQLNLF 381 >ref|ZP_02884898.1| Radical SAM domain protein [Burkholderia graminis C4D1M] gb|EDT09692.1| Radical SAM domain protein [Burkholderia graminis C4D1M] Length = 376 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 252/379 (66%), Positives = 300/379 (79%), Gaps = 16/379 (4%) Query: 40 VAKKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETA 99 V +KGRGAVTN++GRYE RE DDGW A E+ E P L+T V EE A Sbjct: 13 VPRKGRGAVTNVQGRYEVDQREAVDDGW----------LATPEEGEAPKALRTQVFEERA 62 Query: 100 KSIISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPE 159 KSI++RN SPD+PFS+SLNPYRGCEHGCIYCFARP+HSYLGLSPGLDFESR+ AK NAPE Sbjct: 63 KSILTRNASPDIPFSVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKVNAPE 122 Query: 160 LLLRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIER 219 LL REL+K SY+P+ I +G+NTDA+QP ERE +LTRR+++IL + +P A ITKS+LIER Sbjct: 123 LLERELSKKSYEPEPIALGVNTDAWQPAEREWRLTRRVVEILSERNHPFAAITKSSLIER 182 Query: 220 DIDLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIA 279 D+DLLA MAA+ Q + A+TITTLD IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIA Sbjct: 183 DLDLLAPMAARGQFMAAITITTLDAGIARTLEPRAATPSRRLRTIRTLSEAGIPVGVSIA 242 Query: 280 PVIPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRI 339 PVIPFVTEPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVM R+ Sbjct: 243 PVIPFVTEPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLAAHFPDRAERVMARV 302 Query: 340 QDMRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQW 399 +DMRGGKDYD+ F+TRM+G G+WADLL+QRF KA R LG++ R+R LD S FKR + Sbjct: 303 RDMRGGKDYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNQRDRGI--LDMSHFKRHE- 359 Query: 400 APQAPRQPARSDG-QMDLF 417 P+ RQ A D Q+DLF Sbjct: 360 VPR--RQAASGDNPQLDLF 376 >ref|YP_004229086.1| radical SAM protein [Burkholderia sp. CCGE1001] gb|ADX56026.1| Radical SAM domain protein [Burkholderia sp. CCGE1001] Length = 381 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 251/390 (64%), Positives = 304/390 (77%), Gaps = 14/390 (3%) Query: 28 TLTPATFIHRSQVAKKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEP 87 T + A F+ V +KGRGAVTN++GRYE RE DDGW P ++ E P Sbjct: 6 TSSAAEFVIAPPVPRKGRGAVTNVQGRYEVDQREAVDDGWVP----------TADESEPP 55 Query: 88 ARLKTIVTEETAKSIISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDF 147 L+T V EE AKSI++RNTSPD+PF +SLNPYRGCEHGCIYCFARP+HSYLGLSPGLDF Sbjct: 56 RVLRTQVFEERAKSILTRNTSPDIPFGVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDF 115 Query: 148 ESRLVAKTNAPELLLRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENP 207 ESR+ AK NAPELL REL+K SY+P+ I +G+NTDA+QP ER+ +LTRR++++L + +P Sbjct: 116 ESRIYAKVNAPELLERELSKKSYEPEPIALGVNTDAWQPAERDWRLTRRVVEVLSERNHP 175 Query: 208 VAMITKSALIERDIDLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTL 267 A ITKS+LIERD+DLLA MAA+ Q + A+TITTLD IARTLEPRAA+P+RRLR IRTL Sbjct: 176 FAAITKSSLIERDLDLLAPMAARGQFMAAITITTLDADIARTLEPRAATPSRRLRTIRTL 235 Query: 268 AEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAH 327 +EAGIPV VSIAPVIPFVTEPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AH Sbjct: 236 SEAGIPVGVSIAPVIPFVTEPDMERVLEACAEAGACNASYIVLRLPWEVAPLFKDWLAAH 295 Query: 328 FPDRAARVMNRIQDMRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFA 387 FPDRA RVM R++DMRGGKDYD+ F+TRM+G G+WADLL+QRF KA R LG++ R+R Sbjct: 296 FPDRAERVMARVRDMRGGKDYDSAFSTRMKGEGLWADLLKQRFHKAVRRLGLNQRDRGI- 354 Query: 388 TLDASCFKRPQWAPQAPRQPARSDGQMDLF 417 LD S FKR + AP+ P P Q+DLF Sbjct: 355 -LDMSHFKRNE-APRVP-VPRPDKRQLDLF 381 >ref|YP_412310.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196] gb|ABB74918.1| Radical SAM [Nitrosospira multiformis ATCC 25196] Length = 415 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/385 (63%), Positives = 302/385 (78%), Gaps = 2/385 (0%) Query: 25 DDPTLTPATFIHRSQVAKKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQD 84 D P F+ + AKKGRGAV+NL+GRYEQ +R+ DDGW E D Sbjct: 5 DSPMEAEPPFVQPTLKAKKGRGAVSNLQGRYEQWTRQTIDDGWGNDGLIGTADRDKTEDD 64 Query: 85 E--EPARLKTIVTEETAKSIISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLS 142 E + KT + EE AK+I+SRN SPD+PFS+SLNPYRGCEHGCIYCFARP+HSYLGLS Sbjct: 65 EPDTSSTWKTQIIEEHAKTILSRNQSPDVPFSISLNPYRGCEHGCIYCFARPTHSYLGLS 124 Query: 143 PGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILH 202 PGLDFES++ AK NAPELL RELAK SY P+ I +G+NTDAYQP ER+ +LTRR+L++L Sbjct: 125 PGLDFESKIFAKINAPELLRRELAKQSYVPEPIALGVNTDAYQPCERDLRLTRRVLEVLR 184 Query: 203 DCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLR 262 +CE+PVA+I+KS+L+ERD+DLL+ MA++ A+ AVTITTLDPA+ARTLEPRA +PARRLR Sbjct: 185 ECEHPVALISKSSLMERDMDLLSDMASRRLAVAAVTITTLDPAVARTLEPRATAPARRLR 244 Query: 263 VIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQ 322 IRTL +AGIPV VS+APVIPFVTEPDLERV+ AA EAGA AGY++LRLPWE+SPLFRQ Sbjct: 245 TIRTLTDAGIPVGVSVAPVIPFVTEPDLERVLTAAAEAGAINAGYVMLRLPWEISPLFRQ 304 Query: 323 WLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHR 382 WL+AHFPDRAARVMNR++D+RGGKDYD+ F RMRG G+WADL++QRF+K + LG+ Sbjct: 305 WLEAHFPDRAARVMNRVRDIRGGKDYDSSFGRRMRGEGIWADLIRQRFDKTVKRLGLSAH 364 Query: 383 NRAFATLDASCFKRPQWAPQAPRQP 407 + F LD+S F+ P P A + P Sbjct: 365 SHRFTGLDSSRFRAPSVNPVALQSP 389 >ref|YP_003605780.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] gb|ADG16269.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] Length = 383 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/377 (64%), Positives = 296/377 (78%), Gaps = 14/377 (3%) Query: 42 KKGRGAVTNLRGRYEQVSREEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETAKS 101 +KGRGAVTNL+GRYE RE DDGWQ A ++D EP L+T V EE AK+ Sbjct: 20 RKGRGAVTNLQGRYEVDQREAVDDGWQ-----------AADEDSEPKVLRTQVFEERAKT 68 Query: 102 IISRNTSPDLPFSLSLNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELL 161 I++RN SPD+PF++SLNPYRGCEHGCIYCFARP+HSYLGLSPGLDFESR+ AK NAPELL Sbjct: 69 ILTRNASPDIPFNVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKINAPELL 128 Query: 162 LRELAKPSYQPDTITVGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDI 221 REL+K SY P+ I +G+ TDA+QP ER+ +LTRR++++L + +P A ITKS+LIERDI Sbjct: 129 ERELSKKSYVPEPIALGVATDAWQPAERDLRLTRRVIEVLSERNHPFAAITKSSLIERDI 188 Query: 222 DLLAAMAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPV 281 DLLA MA + Q + A+TITTLD IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPV Sbjct: 189 DLLAPMAERGQFMAAITITTLDADIARTLEPRAATPSRRLRTIRTLSEAGIPVGVSIAPV 248 Query: 282 IPFVTEPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQD 341 IPFVTEPD+ERV++A EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVMNR+ D Sbjct: 249 IPFVTEPDMERVLDACAEAGASNASYIVLRLPWEVAPLFKDWLSAHFPDRAERVMNRVHD 308 Query: 342 MRGGKDYDADFATRMRGTGVWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQ-WA 400 MRGGKDYD+ F+TRM+G G+WADLL+QRF KA R LG+ R+R LD S F+R + Sbjct: 309 MRGGKDYDSSFSTRMKGEGLWADLLRQRFHKAVRRLGLSGRDRGI--LDMSQFRRIESLR 366 Query: 401 PQAPRQPARSDGQMDLF 417 + P PAR + Q+ LF Sbjct: 367 AEQPSAPARDNPQLRLF 383