BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0089.p (112 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775312.1| nitrogen regulatory P-II protein [Herbaspiri... 216 1e-54 ref|YP_004753401.1| nitrogen regulatory protein P-II [Collimonas... 202 2e-50 ref|YP_001352841.1| nitrogen regulatory protein PII [Janthinobac... 201 2e-50 ref|ZP_08273094.1| Nitrogen regulatory protein P-II [Oxalobacter... 200 6e-50 ref|ZP_04576304.1| nitrogen regulatory P-II protein [Oxalobacter... 190 7e-47 ref|YP_786158.1| nitrogen regulatory protein P-II [Bordetella av... 187 3e-46 ref|NP_520466.1| nitrogen regulatory P-II transcription regulato... 187 5e-46 ref|ZP_04579128.1| nitrogen regulatory protein PII [Oxalobacter ... 187 5e-46 ref|ZP_05104290.1| nitrogen regulatory protein P-II [Methylophag... 187 6e-46 ref|ZP_08505795.1| Nitrogen regulatory protein P-II [Methylovers... 186 8e-46 >ref|YP_003775312.1| nitrogen regulatory P-II protein [Herbaspirillum seropedicae SmR1] pdb|1HWU|A Chain A, Structure Of Pii Protein From Herbaspirillum Seropedicae pdb|1HWU|B Chain B, Structure Of Pii Protein From Herbaspirillum Seropedicae pdb|1HWU|C Chain C, Structure Of Pii Protein From Herbaspirillum Seropedicae pdb|1HWU|D Chain D, Structure Of Pii Protein From Herbaspirillum Seropedicae pdb|1HWU|E Chain E, Structure Of Pii Protein From Herbaspirillum Seropedicae pdb|1HWU|F Chain F, Structure Of Pii Protein From Herbaspirillum Seropedicae gb|AAB46605.1| PII protein [Herbaspirillum seropedicae] emb|CAM32567.1| Nitrogen regulatory P-II protein [Herbaspirillum seropedicae] gb|ADJ63404.1| nitrogen regulatory P-II protein [Herbaspirillum seropedicae SmR1] Length = 112 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 112/112 (100%), Positives = 112/112 (100%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK Sbjct: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV Sbjct: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 >ref|YP_004753401.1| nitrogen regulatory protein P-II [Collimonas fungivorans Ter331] gb|AEK62578.1| Nitrogen regulatory protein P-II [Collimonas fungivorans Ter331] Length = 118 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/112 (88%), Positives = 109/112 (97%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MKQ+TA+IKPFKLDEVRE+LAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK Sbjct: 7 MKQITAVIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 66 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 +E+V+DD + E+AVDAIIKAARTGKIGDGKIFV+ +EQVIRIRTGETGPDAV Sbjct: 67 VELVIDDALTERAVDAIIKAARTGKIGDGKIFVRNIEQVIRIRTGETGPDAV 118 >ref|YP_001352841.1| nitrogen regulatory protein PII [Janthinobacterium sp. Marseille] gb|ABR90080.1| Nitrogen regulatory protein PII [Janthinobacterium sp. Marseille] Length = 112 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 104/112 (92%), Positives = 107/112 (95%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MKQVTAIIKPFKLDEVRE+LAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK Sbjct: 1 MKQVTAIIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 +E VVDD VEQAVDAIIKAARTGKIGDGKIFVQ VEQVIRIRTGETG +AV Sbjct: 61 VEAVVDDAGVEQAVDAIIKAARTGKIGDGKIFVQAVEQVIRIRTGETGAEAV 112 >ref|ZP_08273094.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium IMCC9480] gb|EGF33439.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium IMCC9480] Length = 112 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 99/112 (88%), Positives = 106/112 (94%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MKQ+TAIIKPFKLDEVRE+LAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK Sbjct: 1 MKQITAIIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 +E +VDD ++ AVDAIIKAARTGKIGDGKIFVQ VEQV+RIRTGETG DAV Sbjct: 61 VEAIVDDSAMDAAVDAIIKAARTGKIGDGKIFVQNVEQVVRIRTGETGSDAV 112 >ref|ZP_04576304.1| nitrogen regulatory P-II protein [Oxalobacter formigenes HOxBLS] gb|EEO27266.1| nitrogen regulatory P-II protein [Oxalobacter formigenes HOxBLS] Length = 112 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 91/112 (81%), Positives = 106/112 (94%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MK++TAIIKPFKLDEVRE+L++ + GLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK Sbjct: 1 MKKITAIIKPFKLDEVREALSDANINGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 IEVVVDD V+E A++AI+K+ARTGKIGDGKIFVQ++EQVIRIRTGETG +A+ Sbjct: 61 IEVVVDDSVLELAIEAILKSARTGKIGDGKIFVQDIEQVIRIRTGETGSEAI 112 >ref|YP_786158.1| nitrogen regulatory protein P-II [Bordetella avium 197N] emb|CAJ49247.1| nitrogen regulatory protein P-II [Bordetella avium 197N] Length = 112 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 92/112 (82%), Positives = 107/112 (95%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 +KQVTAIIKPFKLDEVRE+LAEVGV+GLTVTEVKGFGRQKGHTELYRGAEYVVDFLPK++ Sbjct: 1 VKQVTAIIKPFKLDEVREALAEVGVSGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIR 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 +EVV+ D++VEQA++AI+KAARTGKIGDGKIFV VEQ IRIRTGE+G +A+ Sbjct: 61 VEVVLADELVEQAIEAILKAARTGKIGDGKIFVMPVEQAIRIRTGESGEEAL 112 >ref|NP_520466.1| nitrogen regulatory P-II transcription regulator protein [Ralstonia solanacearum GMI1000] ref|YP_003751785.1| nitrogen regulatory protein P-II for glutamine synthetase [Ralstonia solanacearum PSI07] emb|CAD16052.1| probable nitrogen regulatory p-II transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CBJ37239.1| Nitrogen regulatory protein P-II for glutamine synthetase [Ralstonia solanacearum CMR15] emb|CBJ50488.1| Nitrogen regulatory protein P-II for glutamine synthetase [Ralstonia solanacearum PSI07] emb|CCA82552.1| nitrogen regulatory protein P-II for glutamine synthetase [blood disease bacterium R229] emb|CCA84666.1| nitrogen regulatory protein P-II for glutamine synthetase [Ralstonia syzygii R24] Length = 112 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 95/112 (84%), Positives = 102/112 (91%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MKQ+TAIIKPFKLDEVRESLA+VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPK+K Sbjct: 1 MKQITAIIKPFKLDEVRESLADVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 IEVVV D V+Q +D I+KAA+TGKIGDGKIFV VEQVIRIRTGET AV Sbjct: 61 IEVVVADSQVDQVLDTIVKAAKTGKIGDGKIFVTAVEQVIRIRTGETNEAAV 112 >ref|ZP_04579128.1| nitrogen regulatory protein PII [Oxalobacter formigenes OXCC13] gb|EEO30101.1| nitrogen regulatory protein PII [Oxalobacter formigenes OXCC13] Length = 112 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 89/112 (79%), Positives = 106/112 (94%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MK++TAIIKPFKLDEVRE+L++ + GLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK Sbjct: 1 MKKITAIIKPFKLDEVREALSDANINGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 IEVVVDD +++ A++AI+K+ARTGKIGDGKIFVQ++EQVIRIRTGETG +A+ Sbjct: 61 IEVVVDDSMLDLAIEAILKSARTGKIGDGKIFVQDIEQVIRIRTGETGMEAI 112 >ref|ZP_05104290.1| nitrogen regulatory protein P-II [Methylophaga thiooxidans DMS010] ref|ZP_08534822.1| nitrogen regulatory protein PII [Methylophaga aminisulfidivorans MP] gb|EEF79890.1| nitrogen regulatory protein P-II [Methylophaga thiooxydans DMS010] gb|EGL54291.1| nitrogen regulatory protein PII [Methylophaga aminisulfidivorans MP] Length = 112 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 90/112 (80%), Positives = 103/112 (91%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MKQV AIIKPFKLD+VRESL+E+GV GLTV+EVKGFGRQKGHTELYRGAEYVVDFLPK+K Sbjct: 1 MKQVVAIIKPFKLDDVRESLSEIGVQGLTVSEVKGFGRQKGHTELYRGAEYVVDFLPKLK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 +E+ VDD +VEQ ++AIIK A TGKIGDGKIFV +EQV+RIRTGETGPDA+ Sbjct: 61 LEIAVDDDIVEQVIEAIIKGANTGKIGDGKIFVYPLEQVVRIRTGETGPDAL 112 >ref|ZP_08505795.1| Nitrogen regulatory protein P-II [Methyloversatilis universalis FAM5] gb|EGK71471.1| Nitrogen regulatory protein P-II [Methyloversatilis universalis FAM5] Length = 112 Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 94/112 (83%), Positives = 103/112 (91%) Query: 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 MK++ A+IKPFKLDEVRE L+EVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPK+K Sbjct: 1 MKKIEAVIKPFKLDEVREGLSEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK 60 Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 IEV+V D+ VEQAV+AIIKAARTGKIGDGKIFV VEQVIRIRTGE G A+ Sbjct: 61 IEVIVADETVEQAVEAIIKAARTGKIGDGKIFVMPVEQVIRIRTGEAGEAAI 112