BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0079.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775303.1| ribosomal large subunit pseudouridine syntha... 653 0.0 ref|YP_004753541.1| ribosomal large subunit pseudouridine syntha... 532 e-149 ref|YP_001353037.1| ribosomal large subunit pseudouridine syntha... 518 e-145 ref|YP_001100351.1| 23S rRNA pseudouridylate synthase [Herminiim... 508 e-142 ref|ZP_04578886.1| ribosomal large subunit pseudouridine synthas... 450 e-124 ref|ZP_04576496.1| ribosomal large subunit pseudouridine synthas... 439 e-121 ref|YP_002980943.1| pseudouridine synthase [Ralstonia pickettii ... 436 e-120 ref|YP_001857054.1| RluA family pseudouridine synthase [Burkhold... 436 e-120 ref|ZP_07675902.1| ribosomal large subunit pseudouridine synthas... 434 e-120 ref|YP_003746233.1| ribosomal large subunit pseudouridine syntha... 433 e-119 >ref|YP_003775303.1| ribosomal large subunit pseudouridine synthase C [Herbaspirillum seropedicae SmR1] gb|ADJ63395.1| ribosomal large subunit pseudouridine synthase C protein [Herbaspirillum seropedicae SmR1] Length = 355 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/323 (99%), Positives = 320/323 (99%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRL EGDVVR Sbjct: 33 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLAEGDVVR 92 Query: 61 VPPIRVAEKQEAVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQA 120 VPPIRVAEKQE VVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQA Sbjct: 93 VPPIRVAEKQETVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQA 152 Query: 121 KFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLP 180 KFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLP Sbjct: 153 KFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLP 212 Query: 181 LFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFP 240 LFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFP Sbjct: 213 LFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFP 272 Query: 241 IVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASF 300 IVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASF Sbjct: 273 IVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASF 332 Query: 301 LRSLEGGEEGELLPYGMLAGAEG 323 LRSLEGGEEGELLPYGMLA AEG Sbjct: 333 LRSLEGGEEGELLPYGMLACAEG 355 >ref|YP_004753541.1| ribosomal large subunit pseudouridine synthase C [Collimonas fungivorans Ter331] gb|AEK62718.1| Ribosomal large subunit pseudouridine synthase C [Collimonas fungivorans Ter331] Length = 379 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/305 (82%), Positives = 284/305 (93%), Gaps = 1/305 (0%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 VQ+LTI++++AGQRIDNFLLR+CKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDV+R Sbjct: 57 VQMLTIAEDDAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVIR 116 Query: 61 VPPIRVAEKQ-EAVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQ 119 VPPIR+AEKQ +AV PGAEF+ILLED+HLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQ Sbjct: 117 VPPIRIAEKQTQAVAPGAEFKILLEDNHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQ 176 Query: 120 AKFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKL 179 AKFLELVHRLDRDTSG+LL+AKKRSALTNLH+QMR+G TDKRY LV GDW+N RQHVKL Sbjct: 177 AKFLELVHRLDRDTSGILLLAKKRSALTNLHEQMRDGDTDKRYLVLVHGDWQNERQHVKL 236 Query: 180 PLFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGF 239 PL KY+ DGERRVRVQADGQ SHT+F+L+RR+GD+ALLEAELKTGRTHQIRVHLS+SGF Sbjct: 237 PLHKYTAADGERRVRVQADGQASHTIFNLIRRYGDYALLEAELKTGRTHQIRVHLSASGF 296 Query: 240 PIVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECAS 299 I GDDKYGDF+LN+ALQKADG+R+A KRMFLHA++I+F HPE+G VTLKA LP EC Sbjct: 297 AIAGDDKYGDFSLNRALQKADGQRVALKRMFLHAYQITFAHPETGKPVTLKAPLPPECER 356 Query: 300 FLRSL 304 FL+SL Sbjct: 357 FLKSL 361 >ref|YP_001353037.1| ribosomal large subunit pseudouridine synthase C [Janthinobacterium sp. Marseille] gb|ABR89694.1| ribosomal large subunit pseudouridine synthase C [Janthinobacterium sp. Marseille] Length = 339 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 247/305 (80%), Positives = 276/305 (90%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 VQL+TI+DE+AGQRIDNFLLR+CKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGD+VR Sbjct: 31 VQLVTINDEDAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDIVR 90 Query: 61 VPPIRVAEKQEAVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQA 120 +PPIR+AEK + PGAEF+ILLED+HLLVIDKPAGVAVHGGSGVSYGVIEQLRAARP A Sbjct: 91 IPPIRIAEKAPSTAPGAEFKILLEDNHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPDA 150 Query: 121 KFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLP 180 KFLELVHRLDRDTSGVL++AKKRSALTNLH+Q+R G DKRY LV GDWKNARQH+KLP Sbjct: 151 KFLELVHRLDRDTSGVLVLAKKRSALTNLHEQIRGGEPDKRYLVLVHGDWKNARQHIKLP 210 Query: 181 LFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFP 240 L KY+TP+GERRVRVQADG SHTVF+L++R+G F+LLEAELKTGRTHQIRVHL+SSGF Sbjct: 211 LHKYTTPEGERRVRVQADGMESHTVFNLIQRYGPFSLLEAELKTGRTHQIRVHLASSGFA 270 Query: 241 IVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASF 300 I GDDKYGDFALN+ LQKADG R+A KRMFLHA +I+F HPESG VTL A LP EC F Sbjct: 271 IAGDDKYGDFALNRDLQKADGERVALKRMFLHAHQITFIHPESGKPVTLNAPLPPECERF 330 Query: 301 LRSLE 305 L+SL+ Sbjct: 331 LKSLK 335 >ref|YP_001100351.1| 23S rRNA pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL62228.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) [Herminiimonas arsenicoxydans] Length = 326 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 244/301 (81%), Positives = 270/301 (89%) Query: 5 TISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVRVPPI 64 TIS+EEAGQRIDNFLLR+CKGVPKSHIYRVLRSGEVRVNKGRIDQTYRL EGDVVR+PPI Sbjct: 22 TISEEEAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLTEGDVVRIPPI 81 Query: 65 RVAEKQEAVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQAKFLE 124 R+AEK + PGAEF+ILLED+HLLVIDKPAGVAVHGGSGVSYGVIEQLRAARP AKFLE Sbjct: 82 RIAEKAPSTAPGAEFKILLEDNHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPDAKFLE 141 Query: 125 LVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLPLFKY 184 LVHRLDRDTSGVL++AKKRSALTNLH+Q+R G DKRY LV GDWKNARQH+KL L KY Sbjct: 142 LVHRLDRDTSGVLVLAKKRSALTNLHEQIRGGEPDKRYLVLVHGDWKNARQHIKLALHKY 201 Query: 185 STPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFPIVGD 244 ST DGERRVRVQADG SHT+F+L++R+G+FALLEAELKTGRTHQIRVHL+SSGF I GD Sbjct: 202 STADGERRVRVQADGMESHTIFNLIQRYGEFALLEAELKTGRTHQIRVHLASSGFAIAGD 261 Query: 245 DKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASFLRSL 304 DKYGDFALN+ LQKA+G R+A KRMFLHA +I+F HPESG VTL A LP EC FL+SL Sbjct: 262 DKYGDFALNRELQKANGERVALKRMFLHAHQITFIHPESGKPVTLNAPLPPECERFLKSL 321 Query: 305 E 305 + Sbjct: 322 K 322 >ref|ZP_04578886.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes OXCC13] gb|EEO29859.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes OXCC13] Length = 339 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/312 (67%), Positives = 257/312 (82%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 V+ +T+++ + GQRIDNFL R CKGVPKSHIYR+LRSGEVRVNK RIDQTYRL EGD +R Sbjct: 28 VRQVTVTENDDGQRIDNFLFRTCKGVPKSHIYRILRSGEVRVNKKRIDQTYRLQEGDTIR 87 Query: 61 VPPIRVAEKQEAVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQA 120 +PPI+VAE++E VPGA F IL ED +LVI+KPAGVAVHGGSGVSYGVIEQLRAARP A Sbjct: 88 IPPIKVAEREEKHVPGASFDILYEDDSILVINKPAGVAVHGGSGVSYGVIEQLRAARPNA 147 Query: 121 KFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLP 180 +FLELVHRLD++TSG+L++AKKRSAL LH+Q+REG+ DKRY LV+GDWKN RQHVKLP Sbjct: 148 RFLELVHRLDKETSGILVLAKKRSALVKLHEQIREGSIDKRYQALVKGDWKNQRQHVKLP 207 Query: 181 LFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFP 240 L KY T DGERRVRV A G SHT+F++L+RF +F LLEAELKTGRTHQIRVHL+SSG Sbjct: 208 LLKYHTADGERRVRVDAGGLASHTIFNVLKRFPEFTLLEAELKTGRTHQIRVHLASSGHV 267 Query: 241 IVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASF 300 I GDDKYGDF LN+ +QK A KRMFLHA++I+F HPE+G +T+ A LP EC+ + Sbjct: 268 IAGDDKYGDFELNREIQKGKKGEDALKRMFLHAYKITFIHPETGKPLTVSAPLPDECSGY 327 Query: 301 LRSLEGGEEGEL 312 L+ L+ + ++ Sbjct: 328 LKGLDAENDKDV 339 >ref|ZP_04576496.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes HOxBLS] gb|EEO27458.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes HOxBLS] Length = 340 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/312 (65%), Positives = 253/312 (81%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 V+L+T ++ E GQRIDN+L R KGVPKSH+YR+LRSGE+RVNK R+DQTYR+ GD++R Sbjct: 28 VRLITATENEDGQRIDNYLFRTFKGVPKSHVYRILRSGEIRVNKKRVDQTYRIRTGDIIR 87 Query: 61 VPPIRVAEKQEAVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQA 120 +PP++ AE++E +P A F IL ED +LVI+KPAGVAVHGGSGVSYGVIEQLRA RP A Sbjct: 88 IPPVKTAEQKEKHIPPAGFDILYEDDSVLVINKPAGVAVHGGSGVSYGVIEQLRAMRPGA 147 Query: 121 KFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLP 180 KFLELVHRLD++TSG+L++AKKRSALT LH+Q+R+G+ DKRY LV GDWKN RQHV+LP Sbjct: 148 KFLELVHRLDKETSGILVLAKKRSALTRLHEQIRDGSVDKRYQALVHGDWKNPRQHVRLP 207 Query: 181 LFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFP 240 L KY T +GERRVRV GQ SHT+F++L+ + DF LLEAELKTGRTHQIRVHL+SSGF Sbjct: 208 LLKYHTAEGERRVRVDESGQASHTIFNVLKHYPDFTLLEAELKTGRTHQIRVHLASSGFV 267 Query: 241 IVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASF 300 I GDDKYGDF LN+ LQK A KRMFLHA++I+F HPE+G +T+ A LP EC + Sbjct: 268 IAGDDKYGDFELNRQLQKGKKGEDALKRMFLHAYKITFIHPETGKPLTISAPLPDECIGY 327 Query: 301 LRSLEGGEEGEL 312 L++LE G ++ Sbjct: 328 LKTLESGNSKDM 339 >ref|YP_002980943.1| pseudouridine synthase [Ralstonia pickettii 12D] gb|ACS62271.1| pseudouridine synthase, RluA family [Ralstonia pickettii 12D] Length = 344 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/309 (69%), Positives = 252/309 (81%), Gaps = 5/309 (1%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 V + I +E GQRIDNFL+RV KGVPKSHIYR+LRSGEVRVNKGRID YRL GD+VR Sbjct: 29 VAYVEIGEEAEGQRIDNFLMRVAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVR 88 Query: 61 VPPIRVAEKQEAV--VPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARP 118 +PP+R+A++ EA VP AEF IL ED+HLLVIDKPAGVAVHGGSGV++GVIEQLR +RP Sbjct: 89 IPPLRIAQQVEAARPVPAAEFAILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRP 148 Query: 119 QAKFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVK 178 AKFLELVHRLDR+TSGVLL+AKKRSAL LH+Q+REG DKRYF V+G W + RQH+K Sbjct: 149 DAKFLELVHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHKRQHIK 208 Query: 179 LPLFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSG 238 PL+KY+TP+GERRVRVQADGQ SHT+F+ + FG + LLEAELKTGRTHQIRVHL+ +G Sbjct: 209 SPLYKYTTPEGERRVRVQADGQASHTIFNKVGVFGPYTLLEAELKTGRTHQIRVHLAHAG 268 Query: 239 FPIVGDDKYGDFALNKALQKADGR-RIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQEC 297 FPI+GDDKYGDFALNKAL +A+ R+A RMFLHA R+ HP SG+ VT A LP EC Sbjct: 269 FPILGDDKYGDFALNKALSRANASPRLA--RMFLHAHRLQLTHPHSGEVVTFNAPLPAEC 326 Query: 298 ASFLRSLEG 306 FL + +G Sbjct: 327 TDFLNAFQG 335 >ref|YP_001857054.1| RluA family pseudouridine synthase [Burkholderia phymatum STM815] gb|ACC70008.1| pseudouridine synthase, RluA family [Burkholderia phymatum STM815] Length = 353 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 216/310 (69%), Positives = 245/310 (79%), Gaps = 7/310 (2%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 V +L I D AGQRIDNFLLRVCKGVPKSHIYR+LRSGEVRVNKGR+D YRL GD+VR Sbjct: 20 VSMLEIDDSAAGQRIDNFLLRVCKGVPKSHIYRILRSGEVRVNKGRVDAQYRLAHGDLVR 79 Query: 61 VPPIRVAEKQE---AVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAAR 117 VPPIR+A+ E A+ P A F IL ED HLLVIDKPAGVAVHGGSGV++GVIEQLRAAR Sbjct: 80 VPPIRIAKSDEPAHALAPSAHFDILFEDDHLLVIDKPAGVAVHGGSGVAFGVIEQLRAAR 139 Query: 118 PQAKFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNA---R 174 PQAKFLELVHRLDR+TSGVL++AKKR+AL NLH+Q+RE DKRY+ V G+W + R Sbjct: 140 PQAKFLELVHRLDRETSGVLMLAKKRAALVNLHEQIRENRMDKRYYACVHGEWASDWGRR 199 Query: 175 QHVKLPLFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHL 234 + VK PL KY PDGERRVRVQ DG PSHTVF+L+ R+ D+ALLEAELKTGRTHQIRVHL Sbjct: 200 RAVKEPLHKYLLPDGERRVRVQPDGLPSHTVFNLIERWPDYALLEAELKTGRTHQIRVHL 259 Query: 235 SSSGFPIVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLP 294 + G PIVGD KYGDFALNKAL +A+ + KRMFLHA+R+ HP SG TV A LP Sbjct: 260 AHLGLPIVGDAKYGDFALNKALARANA-NLGLKRMFLHAYRLKLTHPASGQTVQFDAPLP 318 Query: 295 QECASFLRSL 304 EC FL L Sbjct: 319 AECKRFLAQL 328 >ref|ZP_07675902.1| ribosomal large subunit pseudouridine synthase C [Ralstonia sp. 5_7_47FAA] gb|EFP65646.1| ribosomal large subunit pseudouridine synthase C [Ralstonia sp. 5_7_47FAA] Length = 344 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/309 (68%), Positives = 251/309 (81%), Gaps = 5/309 (1%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 V + I +E GQRIDNFL+RV KGVPKSHIYR+LRSGEVRVNKGRID YRL GD+VR Sbjct: 29 VAYVEIGEEAEGQRIDNFLMRVAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVR 88 Query: 61 VPPIRVAEKQEAV--VPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARP 118 +PP+R+A++ EA VP AEF IL ED+HLLVIDKPAGVAVHGGSGV++GVIEQLR +RP Sbjct: 89 IPPLRIAQQVEAARPVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRP 148 Query: 119 QAKFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVK 178 AKFLELVHRLDR+TSGVLL+AKKRSAL LH+Q+REG DKRYF V+G W + RQH+K Sbjct: 149 DAKFLELVHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHKRQHIK 208 Query: 179 LPLFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSG 238 PL+KY+TP+GERRVRVQADGQ SHT+F+ + FG + LLEAELKTGRTHQIRVHL+ +G Sbjct: 209 SPLYKYTTPEGERRVRVQADGQASHTIFNKVGVFGPYTLLEAELKTGRTHQIRVHLAHAG 268 Query: 239 FPIVGDDKYGDFALNKALQKADGR-RIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQEC 297 FPI+GDDKYGDFALNK L +A+ R+A RMFLHA R+ HP SG+ VT A LP EC Sbjct: 269 FPILGDDKYGDFALNKVLSRANASPRLA--RMFLHAHRLQLTHPHSGEVVTFNAPLPAEC 326 Query: 298 ASFLRSLEG 306 FL + +G Sbjct: 327 TDFLNAFQG 335 >ref|YP_003746233.1| ribosomal large subunit pseudouridine synthase c [Ralstonia solanacearum CFBP2957] emb|CBJ43627.1| Ribosomal large subunit pseudouridine synthase C [Ralstonia solanacearum CFBP2957] Length = 350 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/311 (69%), Positives = 255/311 (81%), Gaps = 9/311 (2%) Query: 1 VQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVVR 60 V + I ++ GQRIDNFL+R+ KGVPKSHIYR+LRSGEVRVNKGRID YRL GD+VR Sbjct: 29 VAYVEIGEDAQGQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVR 88 Query: 61 VPPIRVA----EKQEAV--VPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLR 114 +PP+R+A E+ EA VP AEF IL ED+HLLVIDKPAGVAVHGGSGV++GVIEQLR Sbjct: 89 IPPLRIAQPSAEQVEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLR 148 Query: 115 AARPQAKFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNAR 174 +RP AKFLELVHRLDR+TSGVLL+AKKRSAL LH+Q+REG DKRYF V+G W + R Sbjct: 149 RSRPDAKFLELVHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHQR 208 Query: 175 QHVKLPLFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHL 234 QH+K PLFKY+TP+GERRVRVQADGQPSHT+F+ + FG + LLEAELKTGRTHQIRVHL Sbjct: 209 QHIKAPLFKYTTPEGERRVRVQADGQPSHTIFNKVGVFGPYTLLEAELKTGRTHQIRVHL 268 Query: 235 SSSGFPIVGDDKYGDFALNKALQKADGR-RIAFKRMFLHAWRISFRHPESGDTVTLKAGL 293 + +GFPI+GDDKYGDFALNKAL +A+ R+A RMFLHA + HP+SG+ VT KA L Sbjct: 269 AHAGFPILGDDKYGDFALNKALSRANASPRLA--RMFLHAHTLRLTHPQSGEIVTFKAPL 326 Query: 294 PQECASFLRSL 304 P ECA+FL +L Sbjct: 327 PAECAAFLDAL 337