BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0066.p (472 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum s... 885 0.0 ref|YP_004752987.1| tRNA(Ile)-lysidine synthetase [Collimonas fu... 475 e-132 ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas... 449 e-124 ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium s... 448 e-123 ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacterace... 434 e-119 ref|ZP_04578125.1| MesJ cell cycle protein [Oxalobacter formigen... 348 1e-93 ref|ZP_04575928.1| MesJ cell cycle protein [Oxalobacter formigen... 343 4e-92 ref|YP_001808677.1| tRNA(Ile)-lysidine synthetase [Burkholderia ... 280 4e-73 ref|ZP_02892493.1| tRNA(Ile)-lysidine synthetase [Burkholderia a... 279 7e-73 ref|YP_774000.1| tRNA(Ile)-lysidine synthetase [Burkholderia amb... 276 7e-72 >ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ63382.1| PP-loop superfamily ATPase, implicated in cell cycle control, protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/449 (98%), Positives = 445/449 (99%) Query: 24 LSASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHADAWL 83 +SASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENG TSRLAPLHVHHGLSPHADAWL Sbjct: 1 MSASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWL 60 Query: 84 AHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTAHHLD 143 AHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGAR+LLTAHHLD Sbjct: 61 AHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLD 120 Query: 144 DQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLVMARPFLGVTRAQLEAVADAMSL 203 DQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRL+MARPFLGVTRAQLEAVADAMSL Sbjct: 121 DQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSL 180 Query: 204 KWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLA 263 KWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLA Sbjct: 181 KWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLA 240 Query: 264 HCREDDHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCV 323 HCRED+HLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCV Sbjct: 241 HCREDEHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCV 300 Query: 324 SHPDGEVHRYRERVFLAPRRMPPDEGAVATLHWDGQAQWRLPAWYGTLHFDRIGGDDARP 383 SHPDGEVHRYRERVFLAPRRMPPDEGAVATL WDGQAQWRLPAWYGTLHFDRIGGDDARP Sbjct: 301 SHPDGEVHRYRERVFLAPRRMPPDEGAVATLRWDGQAQWRLPAWYGTLHFDRIGGDDARP 360 Query: 384 GFDLAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESL 443 GFD AWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESL Sbjct: 361 GFDPAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESL 420 Query: 444 LFAAGIGMDCGQFAQSATAQRIALRWQPD 472 LFAAGIGMDCGQFA SATAQRIALRWQPD Sbjct: 421 LFAAGIGMDCGQFAPSATAQRIALRWQPD 449 >ref|YP_004752987.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331] gb|AEK62164.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331] Length = 472 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 250/438 (57%), Positives = 308/438 (70%), Gaps = 9/438 (2%) Query: 36 LAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHADAWLAHAQACCAQLGL 95 LAVAYSGGLDS+VLL AAQ+A +G+ +L H+HHG+SP+AD W +H CA+LG+ Sbjct: 35 LAVAYSGGLDSSVLLHAAAQYAGAHGA--QLFAFHIHHGISPNADQWQSHCAEACARLGV 92 Query: 96 VLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTAHHLDDQAETVLLQLLR 155 V + R+ L SGVEEAAR++RYAALG LCRQ +LLT HHLDDQAETVLLQLLR Sbjct: 93 VFDTRRIALRNSDKSGVEEAARISRYAALGDLCRQHQIPLLLTGHHLDDQAETVLLQLLR 152 Query: 156 GSGLAGLSGMDRCNTAPALLGDDRLVMARPFLGVTRAQLEAVADAMSLKWIEDESNSDPR 215 GSG AGLSGMDR NTAP LLGD L+MARP L V+RA LE A A L +IEDESN DPR Sbjct: 153 GSGAAGLSGMDRWNTAPTLLGDAVLLMARPLLKVSRAALEQYAAAQQLTFIEDESNHDPR 212 Query: 216 YTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDDHLRMPP 275 Y RNALR QVMP L Q FPG+Q+R +R+AGH Q Q LL ++A QD+A C + L + Sbjct: 213 YARNALRQQVMPVLAQHFPGFQERFSRSAGHMQTTQRLLIDLAAQDMAVCADGACLDLEH 272 Query: 276 LRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHRYRE 335 +R+LS +R NL+R+WFGL +RMPS+AW+ EMR QLL+A +AQLCV+HPD + R+R Sbjct: 273 VRQLSGERIDNLLRYWFGLHHLRMPSSAWLSEMRQQLLEAKADAQLCVTHPDCHIRRHRN 332 Query: 336 RVFLAPR-RMPPDEGAVATLHWDGQAQWRLPAWYGTLHFDRIGGDDARPGFDLAWLQGQS 394 RVFL PR + E W+G+A+ R P + G LHFD+ A G D WL+ QS Sbjct: 333 RVFLTPRDDVDRSEIEPQAFRWNGEAEMRFPQFGGVLHFDQ-----AEQGIDADWLRAQS 387 Query: 395 LLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESLLFAAGIGMDCG 454 L RSGGER++LA NRP +S+K YQ+ DVP WER LPLV +G+ +LFAAGIGMDC Sbjct: 388 LQIQYRSGGERLKLALNRPTKSVKYHYQAFDVPPWERERLPLVSSGKQILFAAGIGMDCL 447 Query: 455 QFAQSATAQRIALRWQPD 472 Q A + I+LRWQ D Sbjct: 448 QLA-AGPGLHISLRWQAD 464 >ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans] emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS [Herminiimonas arsenicoxydans] Length = 465 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 242/454 (53%), Positives = 302/454 (66%), Gaps = 11/454 (2%) Query: 20 LQDSLSASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHA 79 ++ +S SG +A +A+AYSGGLDS LL++ +A ++G L HVHHGLS +A Sbjct: 20 IRTRVSLSG--SAAQKIAIAYSGGLDSAALLYLLRAYATQHGL--ELFAFHVHHGLSLNA 75 Query: 80 DAWLAHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTA 139 D WLAH Q CA LG+ + RVQ+ SGVEEAAR +RYAALG +CR +LLTA Sbjct: 76 DQWLAHCQQQCAGLGVAFDARRVQIANQDKSGVEEAARHSRYAALGEMCRAHDVPLLLTA 135 Query: 140 HHLDDQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLVMARPFLGVTRAQLEAVAD 199 HH DDQAETVLLQLLRGSG+AGLSGMD N A LLGD L+M RP L + RA LE + Sbjct: 136 HHQDDQAETVLLQLLRGSGVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVT 195 Query: 200 AMSLKWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAE 259 + ++ ++EDESN DPRY RNALRHQVMP L Q FPG+QQR AR A HAQ AQ LL E+A Sbjct: 196 SNAIAFVEDESNLDPRYARNALRHQVMPTLAQHFPGFQQRFARTAQHAQSAQRLLIELAA 255 Query: 260 QDLAHCREDDHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEA 319 QDL C + D L + LR+ S R +++R+WFG RG+RMPS +W+ EMR QLL+A +A Sbjct: 256 QDLTVCLDGDCLDITKLRQFSTDRIDSMLRYWFGSRGVRMPSTSWLNEMRTQLLEAKHDA 315 Query: 320 QLCVSHPDGEVHRYRERVFLAPRRMPPD-EGAVATLHWDGQAQWRLPAWYGTLHFDRIGG 378 QLCV+H D + R+R+RV+L P+ P E A WDG + + GTL F Sbjct: 316 QLCVTHADCHIRRHRDRVYLTPKLDPASLEQAPLAFRWDGTTAMQFAEFGGTLFF----- 370 Query: 379 DDARPGFDLAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVW 438 ++A G WL+GQ+L RSGGER++ A NRP +SLK YQ+ DVPAWER LPLV+ Sbjct: 371 EEAEQGVSAEWLRGQALTMQLRSGGERLKPAWNRPTKSLKYHYQAGDVPAWERERLPLVF 430 Query: 439 AGESLLFAAGIGMDCGQFAQSATAQRIALRWQPD 472 A + LLFAAGIGMDC F+ A I LRWQ D Sbjct: 431 AEKQLLFAAGIGMDCHSFSTQA-GTHIQLRWQFD 463 >ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] Length = 462 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 242/452 (53%), Positives = 305/452 (67%), Gaps = 15/452 (3%) Query: 23 SLSASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHADAW 82 SLS+S A +A+AYSGGLDS LL + + + HVHHGLSP+AD W Sbjct: 17 SLSSS----AKAKIALAYSGGLDSAALLHLLHAYGL--AQQIEIFAFHVHHGLSPNADDW 70 Query: 83 LAHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTAHHL 142 LAH +A CA LG+V + +VQ+ +G+EEAAR +RYAALG +CR G +LLTAHHL Sbjct: 71 LAHCRAQCAALGVVFDARQVQVTRQGKNGIEEAARQSRYAALGDMCRAHGVPLLLTAHHL 130 Query: 143 DDQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLVMARPFLGVTRAQLEAVADAMS 202 DDQAETVLLQLLRGSG+AGLSGMD N A LLGD L+M RP L V R L+A A + Sbjct: 131 DDQAETVLLQLLRGSGVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHA 190 Query: 203 LKWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDL 262 ++++EDESN DPRY RNALRHQVMP L + FPG+QQR AR A HAQ AQ LL E+A +DL Sbjct: 191 IQFVEDESNLDPRYARNALRHQVMPKLEEYFPGFQQRFARTAEHAQSAQRLLIELAAEDL 250 Query: 263 AHCREDDHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLC 322 C + + + + LR+ S R N++R+WFGLRG+RMPS AW+ EMR QLL+A +AQLC Sbjct: 251 QQCLDGECVDVTKLRQFSADRIDNMLRYWFGLRGVRMPSTAWLNEMRTQLLEAKHDAQLC 310 Query: 323 VSHPDGEVHRYRERVFLAPRRMPPD--EGAVATLHWDGQAQWRLPAWYGTLHFDRIGGDD 380 V+H D + R+R+RV++ P + PD + +W G+A P++ GTL+FD+ Sbjct: 311 VTHADCHIRRHRDRVYITP-KFDPDLLLQPPRSFNWQGEASLHFPSFGGTLYFDQ----- 364 Query: 381 ARPGFDLAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAG 440 A G WL Q+LL RSGGER++ A NRP +SLK QYQ+ DVPAWER LPLV+AG Sbjct: 365 AEQGIAAEWLGAQTLLIQLRSGGERLKPAWNRPTKSLKYQYQACDVPAWERERLPLVFAG 424 Query: 441 ESLLFAAGIGMDCGQFAQSATAQRIALRWQPD 472 + LLFAAGIGMDC + T I LRWQ D Sbjct: 425 KQLLFAAGIGMDCHPL-NTETGGNIQLRWQFD 455 >ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32180.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 467 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 242/441 (54%), Positives = 295/441 (66%), Gaps = 10/441 (2%) Query: 31 AAHDTLAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHADAWLAHAQACC 90 AA D LA+AYSGGLDS+ LL++A + A++NG RL HVHHGLS AD WL H C Sbjct: 30 AAGDALAIAYSGGLDSSALLYLAHRHAQKNGI--RLFAFHVHHGLSADADDWLQHCAGEC 87 Query: 91 AQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTAHHLDDQAETVL 150 A+LG+ ++RVQL SG+E AAR +RYAALG +CR G +LLTAHH DDQAETVL Sbjct: 88 ARLGVTFAAQRVQLADTGVSGIEAAARSSRYAALGAMCRAHGVPLLLTAHHQDDQAETVL 147 Query: 151 LQLLRGSGLAGLSGMDRCNTAPALLGDDRLVMARPFLGVTRAQLEAVADAMSLKWIEDES 210 LQLLRGSG+AGLSGMD N AP LLGD LVMARP L +R QL + + ++D S Sbjct: 148 LQLLRGSGVAGLSGMDTANCAPDLLGDAVLVMARPLLSFSRMQLATLVAKEGITHVDDAS 207 Query: 211 NSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDDH 270 N D RY RNALRH+VMPAL + FPG+Q RLAR A HAQ AQ LL E+A QDLA C D Sbjct: 208 NLDTRYARNALRHEVMPALAKFFPGFQHRLARTASHAQSAQRLLIELATQDLALCAAGDA 267 Query: 271 LRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEV 330 L + LR LS R NL+R+WFG RG+RMPS +W+ EMR QL +A +AQLCV+H D + Sbjct: 268 LDISRLRLLSPDRADNLLRYWFGSRGVRMPSTSWLHEMRTQLFEAKPDAQLCVTHADCHI 327 Query: 331 HRYRERVFLAPRRMP--PDEGAVATLHWDGQAQWRLPAWYGTLHFDRIGGDDARPGFDLA 388 R+R+ VF+ P R+ P+E V W G+AQ P G+L F+ A G Sbjct: 328 RRHRDHVFITPHRIEFDPEELPVIGFRWSGEAQLDFPDLNGSLMFEA-----AEQGVAAD 382 Query: 389 WLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESLLFAAG 448 WL GQ+L RSGGER++ A NR R+LK YQ+ +VPAWER LP+V G+ LLFAAG Sbjct: 383 WLTGQALAISLRSGGERLKPAPNRSTRALKYHYQAGNVPAWERERLPVVRVGKKLLFAAG 442 Query: 449 IGMDCGQFAQSATAQRIALRW 469 +GMDC F+ SA RIALRW Sbjct: 443 VGMDCHHFS-SADEPRIALRW 462 >ref|ZP_04578125.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13] gb|EEO29098.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13] Length = 473 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 186/441 (42%), Positives = 274/441 (62%), Gaps = 16/441 (3%) Query: 36 LAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHADAWLAHAQACCAQLGL 95 +A+AYSGGLDS+VLL +A ++A EN L HVHHGL+PHAD WLAH + C +LG+ Sbjct: 44 IAIAYSGGLDSSVLLHLAHRFAIENDCA--LFAFHVHHGLNPHADDWLAHCENECIRLGV 101 Query: 96 VLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTAHHLDDQAETVLLQLLR 155 S+RVQ++ + G+E AR RY ALG +CR+ +LLTAHH DDQ ETVLLQL+R Sbjct: 102 SFDSQRVQIDPQSGDGIEAEAREKRYRALGEMCRKHDIPLLLTAHHEDDQVETVLLQLMR 161 Query: 156 GSGLAGLSGMDRCNTAPALLGDDRLVMARPFLGVTRAQLEAVADAMSLKWIEDESNSDPR 215 G+G+AGLSGM+ + +P LLGD+ L + RP L V+R +L + + I+D+SN D Sbjct: 162 GTGVAGLSGMEASSHSPELLGDETLFLGRPLLSVSRKELASWLVEAGITHIDDDSNDDVA 221 Query: 216 YTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCRE-DDHLRMP 274 YTRNA+RH+++P L +FPG+Q+RL R A HA A+ LL EVA++D C + L + Sbjct: 222 YTRNAIRHRLVPVLEDLFPGFQKRLFRTAQHAGSARRLLEEVAKKDFEACTSGKNSLNLE 281 Query: 275 PLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHRYR 334 LR L+ +R NL+R+W +RMPS AW+ + R QLL+A +AQ+ + + RYR Sbjct: 282 QLRLLNRERIDNLLRYWLAASRVRMPSTAWLVQAREQLLEAREDAQIDLILDGYTIRRYR 341 Query: 335 ERVFLAPRRMPPDEGAVA---TLHWDGQAQWRLPAWYGTLHFDRIGGDDARPGFDLAWLQ 391 + + L R G + W G+ ++RL W+GTL+F +++ GFD+ WLQ Sbjct: 342 QNISLG--RTVESTGNQPHPLEIQWHGENRFRLHQWHGTLYF-----EESETGFDIDWLQ 394 Query: 392 GQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESLLFAAGIGM 451 + L G +++LA RP ++LK Q +P+WER +LPLV+ + L++ AGIG+ Sbjct: 395 RRKLRIEPYRGSAKLKLAG-RPTKTLKALCQDRGIPSWERQFLPLVFFEDDLVYVAGIGI 453 Query: 452 DCGQFAQSATAQRIALRWQPD 472 + ++ + +RW+ D Sbjct: 454 SASRLKKNGKC--VQIRWERD 472 >ref|ZP_04575928.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS] gb|EEO26890.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS] Length = 468 Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 272/467 (58%), Gaps = 21/467 (4%) Query: 14 VLLQQALQDSLSASGFDAAHDT-----LAVAYSGGLDSTVLLWVAAQWARENGSTSRLAP 68 +L + +S +AS F ++ +A+AYSGGLDSTVLL A ++A E RL Sbjct: 12 TILMRVFYNSENASLFSGGGESSAVPAIAIAYSGGLDSTVLLHCAHRFAAE--KNIRLFA 69 Query: 69 LHVHHGLSPHADAWLAHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLC 128 H+HHGL+ ADAWL H +A C + G+ +S +V+++ + G+E AR RYAALG +C Sbjct: 70 FHIHHGLNRKADAWLNHCEAACMEQGIRFESRKVRVDRGSGDGIEAEARSKRYAALGEMC 129 Query: 129 RQQGARMLLTAHHLDDQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLVMARPFLG 188 R+ +LLTAHH DDQ ETVL+ L+RG+G+AGL+GMD AP LLGD + + RPFL Sbjct: 130 RKNEVTLLLTAHHEDDQVETVLMHLMRGTGIAGLAGMDSVTQAPELLGDTKTWVGRPFLS 189 Query: 189 VTRAQLEAVADAMSLKWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQ 248 ++R +L + A A +L +ED+SN+D +YTRNA+RH+++P L +FPG+ RL+R A HA+ Sbjct: 190 LSREELASWAKAKNLSCVEDDSNNDTKYTRNAIRHRLIPVLSDMFPGFGNRLSRMAQHAR 249 Query: 249 GAQELLREVAEQDLAHCR-EDDHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQE 307 A ++L E QDL CR + L + +L R NL R W G+R+PSA+W ++ Sbjct: 250 SANKVLNETGRQDLEMCRISQNALDLVKAGKLGPDRMDNLFRCWLIENGIRIPSASWYRQ 309 Query: 308 MRHQLLQADVEAQLCVSHPDGEVHRYRERVFLA---PRRMPPDEGAVATLHWDGQAQWRL 364 + Q++ + +AQ+ + + +YR RVFL +RM P + W+G+ RL Sbjct: 310 AKKQIVDSRADAQVDLPLKGYVLRKYRNRVFLEKNDKKRMKPLTSCF--IRWNGERSTRL 367 Query: 365 PAWYGTLHFDRIGGDDARPGFDLAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSA 424 WYGTL F ++ G D WL+ L G +++L RP + LK YQ A Sbjct: 368 EPWYGTLFF-----EECENGLDSEWLKNSILRIDPYRGNAQLKL-HKRPTKKLKILYQEA 421 Query: 425 DVPAWERPYLPLVWAGESLLFAAGIGMDCGQFAQSATAQRIALRWQP 471 +P WER +LPL++ + L+FA G+G R RW+P Sbjct: 422 GIPLWERAFLPLIYMEDELVFAGGLGQSARHAGSGEKCVR--FRWEP 466 >ref|YP_001808677.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6] gb|ACB64461.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6] Length = 468 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 202/475 (42%), Positives = 263/475 (55%), Gaps = 29/475 (6%) Query: 12 TLVLLQQALQDSLSASGFDAAHDT-LAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLH 70 T + + + D++ + D D +A+AYSGGLDSTVLL A + A SR LH Sbjct: 5 TELFADRVVLDAVGVALADLPADARIAIAYSGGLDSTVLLDAAVRVA----GASRCVALH 60 Query: 71 VHHGLSPHADAWLAHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQ 130 VHHGLS +ADAW+AHAQA +LG+ +SERV + + G+E +AR RYAAL +C + Sbjct: 61 VHHGLSANADAWVAHAQATAERLGVTFESERVDVPRDSGLGIEASARERRYAALDAMCER 120 Query: 131 QGARMLLTAHHLDDQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLV-MARPFLGV 189 G L A H DDQAETVLLQLLRG+G+AGL+ M AP D V RPFL + Sbjct: 121 HGVAALWVAQHADDQAETVLLQLLRGAGIAGLAAM-----APRYRPDGASVERVRPFLRL 175 Query: 190 TRAQLEAVADAMSLKWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQG 249 RAQLE A L WI+DESN+D RY RNALR V+PAL FPG++ L RAA HA Sbjct: 176 LRAQLERYAAQRELAWIDDESNADTRYARNALRIDVLPALAMHFPGFRDALGRAAQHAAA 235 Query: 250 AQELLREVAEQDLAHCREDDH--LRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQE 307 AQ LL ++AE D A DD L L + R NL+R W G+ SA + Sbjct: 236 AQRLLDDLAELDFAGAARDDGRALSREALVAFDDTRGANLLRFWMRRLGLPGASAGRLAN 295 Query: 308 MRHQLLQADVEAQLCVSHPDGEVHRYRERVF--LAPRRMPPDEGA-----VATLHWDGQA 360 M QL A L V H + YR+ V+ P D+G A+L WDGQ Sbjct: 296 MMRQLRDAHDAHALRVDHAGQCLRLYRDVVYWEAGDSADPADDGTGMPRPEASLAWDGQE 355 Query: 361 QWRLPAWYGTLHFD--RIGGDDARPGFDLAWLQGQSLLACGRSGGERIRLAANRPARSLK 418 W +PAW GT F G D A P A L+G +L+ R+GGER+R + P R+LK Sbjct: 356 VWHVPAWRGTFVFGPAEAGSDGAVPE---ALLRGATLVVRARAGGERLRTSPGGPGRTLK 412 Query: 419 QQYQSADVPAWERPYLPLVWAGESLLFAAGIGMDCGQ-FAQSATAQRIALRWQPD 472 +Q VPAW+R +PL++AG+ L++ +G++ G A +RI W+PD Sbjct: 413 NLFQERGVPAWQRD-VPLLFAGDRLVYVPRLGVNHGDGLAGEGGWRRI--EWRPD 464 >ref|ZP_02892493.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10] gb|EDT01915.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10] Length = 468 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 194/449 (43%), Positives = 249/449 (55%), Gaps = 26/449 (5%) Query: 36 LAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHADAWLAHAQACCAQLGL 95 +A+AYSGGLDSTVLL + A SR LHVHHGLS +ADAW+AHAQA +LG+ Sbjct: 30 IAIAYSGGLDSTVLLDATVRMA----GASRCVALHVHHGLSANADAWVAHAQATAERLGV 85 Query: 96 VLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTAHHLDDQAETVLLQLLR 155 +SERV + + G+E +AR RYAAL +C + G L A H DDQAETVLLQLLR Sbjct: 86 TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVATLWVAQHADDQAETVLLQLLR 145 Query: 156 GSGLAGLSGMDRCNTAPALLGDDRLV-MARPFLGVTRAQLEAVADAMSLKWIEDESNSDP 214 G+G+AGL+ M AP D V RPFL + RAQLE A L WI+DESN+D Sbjct: 146 GAGIAGLAAM-----APRYRPDGASVERVRPFLRLLRAQLERYAAQRELAWIDDESNADT 200 Query: 215 RYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDDH--LR 272 RY RNALR V+P L FPG++ L RAA HA AQ LL ++AE D A DD L Sbjct: 201 RYARNALRIDVLPTLAMHFPGFRDALGRAAQHAAAAQRLLDDLAELDFAGAARDDGRALS 260 Query: 273 MPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHR 332 L + R NL+R W G+ SA + M QL A L V H + Sbjct: 261 RDALVAFDDTRGANLLRFWMRRLGLPSASAGRLANMMRQLRDAHDAHALRVDHAGQCLRL 320 Query: 333 YRERVF--LAPRRMPPDEGA-----VATLHWDGQAQWRLPAWYGTLHF--DRIGGDDARP 383 YR+ V+ P D+G A+L WDGQ W +PAW GT F G D A P Sbjct: 321 YRDVVYWEAGDSAAPADDGTGMPRPEASLAWDGQEVWHVPAWRGTFVFAPAEAGSDGAVP 380 Query: 384 GFDLAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESL 443 A L+G +L+ R+GGER+R + P R+LK +Q VPAW+R +PL++AG+ L Sbjct: 381 E---ALLRGATLVVRARAGGERLRTSPGGPGRTLKNLFQERGVPAWQRD-VPLLFAGDRL 436 Query: 444 LFAAGIGMDCGQFAQSATAQRIALRWQPD 472 ++ +G++ G R + W+PD Sbjct: 437 VYVPRLGVNHGDGLSGDGGWR-RIEWRPD 464 >ref|YP_774000.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD] gb|ABI87666.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD] Length = 473 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 190/432 (43%), Positives = 244/432 (56%), Gaps = 25/432 (5%) Query: 36 LAVAYSGGLDSTVLLWVAAQWARENGSTSRLAPLHVHHGLSPHADAWLAHAQACCAQLGL 95 +A+AYSGGLDSTVLL A + A SR LHVHHGLS +ADAW+AHAQA +LG+ Sbjct: 30 IAIAYSGGLDSTVLLDAAVRVA----GASRCVALHVHHGLSANADAWVAHAQATAERLGV 85 Query: 96 VLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARMLLTAHHLDDQAETVLLQLLR 155 +SERV + + G+E +AR RYAAL +C + G L A H DDQAETVLLQLLR Sbjct: 86 TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAALWVAQHADDQAETVLLQLLR 145 Query: 156 GSGLAGLSGMDRCNTAPALLGDDRLV-MARPFLGVTRAQLEAVADAMSLKWIEDESNSDP 214 G+G+AGL+ M AP D V RPFL + RAQLE A L WI+DESN+D Sbjct: 146 GAGIAGLAAM-----APRYRPDGASVERVRPFLRLLRAQLERYAAQRELAWIDDESNADT 200 Query: 215 RYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDDH--LR 272 RY RNALR V+P L FPG++ L RAA HA AQ LL ++AE D A DD L Sbjct: 201 RYARNALRIDVLPTLAMHFPGFRDALGRAAQHAAAAQRLLDDLAELDFAGAARDDGRALS 260 Query: 273 MPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHR 332 L + R NL+R W G+ SA + M QL A L V H + Sbjct: 261 RDALVAFDDTRGANLLRFWMRRLGLPGASAGRLANMMRQLRDAHDAHALRVDHAGQCLRL 320 Query: 333 YRERVF--LAPRRMPPDEGA-----VATLHWDGQAQWRLPAWYGTLHF--DRIGGDDARP 383 YR+ V+ P D+G ++L WDGQ W +PAW GT F G D A P Sbjct: 321 YRDVVYWEAGDSADPADDGTGMPRPESSLAWDGQEVWHVPAWRGTFVFAPAEAGSDGAVP 380 Query: 384 GFDLAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESL 443 A L+G +L+ R+GGER+R + P R+LK +Q VPAW+R +PL++AG+ L Sbjct: 381 D---ALLRGATLVVRARAGGERLRTSPGGPGRTLKNLFQERGVPAWQRD-VPLLFAGDRL 436 Query: 444 LFAAGIGMDCGQ 455 ++ +G++ G Sbjct: 437 VYVPRLGVNHGD 448