BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0053.p (845 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspiril... 1701 0.0 ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter33... 1357 0.0 ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium s... 1338 0.0 emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas ar... 1328 0.0 ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimona... 1269 0.0 ref|YP_001857925.1| ribonuclease R [Burkholderia phymatum STM815... 1168 0.0 ref|ZP_02883392.1| ribonuclease R [Burkholderia graminis C4D1M] ... 1160 0.0 ref|YP_296280.1| RNAse R [Ralstonia eutropha JMP134] >gi|7211917... 1160 0.0 ref|ZP_03264556.1| ribonuclease R [Burkholderia sp. H160] >gi|20... 1159 0.0 ref|YP_002005900.1| rnase r, 3'-5' exoribonuclease [Cupriavidus ... 1159 0.0 >ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] gb|ADJ63371.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] Length = 839 Score = 1701 bits (4406), Expect = 0.0, Method: Compositional matrix adjust. Identities = 834/839 (99%), Positives = 836/839 (99%) Query: 7 LSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 66 +SQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD Sbjct: 1 MSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 60 Query: 67 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 126 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT Sbjct: 61 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 120 Query: 127 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 186 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV Sbjct: 121 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 180 Query: 187 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 246 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV Sbjct: 181 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 240 Query: 247 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 306 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN Sbjct: 241 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 300 Query: 307 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 366 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ Sbjct: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 Query: 367 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 426 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID Sbjct: 361 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 420 Query: 427 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 486 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG Sbjct: 421 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 480 Query: 487 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 546 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY Sbjct: 481 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 540 Query: 547 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 606 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA Sbjct: 541 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 600 Query: 607 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 666 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD Sbjct: 601 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 660 Query: 667 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 726 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ Sbjct: 661 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 720 Query: 727 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQEAGQP 786 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQEA QP Sbjct: 721 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQEASQP 780 Query: 787 AARGKKGAAAKPAAAAAGSKAKGGAKAKAGGARTSTARPGEADRKRAASKGFTKGKKKR 845 AARGKKGAAAKPAA+AAGSKAKGGAKAKAGGARTST RPGEADRKRAASKGF KGKKKR Sbjct: 781 AARGKKGAAAKPAASAAGSKAKGGAKAKAGGARTSTTRPGEADRKRAASKGFAKGKKKR 839 >ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter331] gb|AEK62174.1| Ribonuclease R [Collimonas fungivorans Ter331] Length = 780 Score = 1357 bits (3511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 664/799 (83%), Positives = 716/799 (89%), Gaps = 20/799 (2%) Query: 47 MDGLTRRLNAMERDGQIKPDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLP 106 MDGLTRRLNAMERDGQIKPDR+G YKLT+SP FI GRVSSHRDGFGFL+ D+G DD+FLP Sbjct: 1 MDGLTRRLNAMERDGQIKPDRSGVYKLTNSPGFIEGRVSSHRDGFGFLISDEGGDDVFLP 60 Query: 107 EKEMQKVMHGDRVQARIVGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKR 166 EKEMQKV+HGDRVQARI+GTDRRGRPEGTIVEVV RANTHVIGRLLNENGVW++APEDKR Sbjct: 61 EKEMQKVLHGDRVQARIIGTDRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVIAPEDKR 120 Query: 167 IGHDVLLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 226 IG D++LAG PGKAKAGQVVSV+LTE PSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG Sbjct: 121 IGQDIILAGSPGKAKAGQVVSVQLTEQPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 180 Query: 227 VPHEFSEAAKKLSAKLPSEVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGR 286 VPHEFSEAAKKL+AKLP EV+AADL DRVDLRDVPLVTIDGEDARDFDDAVYCEP+KIGR Sbjct: 181 VPHEFSEAAKKLAAKLPGEVRAADLGDRVDLRDVPLVTIDGEDARDFDDAVYCEPIKIGR 240 Query: 287 TKGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 346 GYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD Sbjct: 241 ANGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 300 Query: 347 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLT 406 RLTLVCDAVI+AKGEIKAYQFYPAVIHSAARLTYTEVA+IL NTKGPEAA+R GLVPHL Sbjct: 301 RLTLVCDAVISAKGEIKAYQFYPAVIHSAARLTYTEVAAILGNTKGPEAAKRPGLVPHLL 360 Query: 407 HLYEVFQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANV 466 HLYEVF ALL ARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAH++IEECMLAANV Sbjct: 361 HLYEVFHALLQARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHKVIEECMLAANV 420 Query: 467 CAADLLKRHDHPALYRIHAGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKA 526 CAADL++RH HP L+RIHA PTKEKL LRTFLKQVGLTL GGDTPSASDYA LMPK+KA Sbjct: 421 CAADLMERHKHPGLFRIHAHPTKEKLAVLRTFLKQVGLTLAGGDTPSASDYAALMPKIKA 480 Query: 527 RPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQG 586 RPDA+L+QTMLLRSMQQAVYSP+NIGHFGLSYESYAHFTSPIRRYPDLLTHR IKA+LQG Sbjct: 481 RPDALLLQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRTIKAILQG 540 Query: 587 KRYEPKGIDSGALNTSISPAARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANER 646 KRYEPKG D+ +LNT +SPA RK QA+ DKAAGKK R E +LA+WEALG+HCSANER Sbjct: 541 KRYEPKGFDTSSLNTMLSPAGRKKQAE----DKAAGKK-RNEGSLAVWEALGVHCSANER 595 Query: 647 RADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADY 706 RADEASRDVEAWLKCYFIRDKLGEEFTG ISGVATFGIFVQLDALYIEGLVHVTELGADY Sbjct: 596 RADEASRDVEAWLKCYFIRDKLGEEFTGVISGVATFGIFVQLDALYIEGLVHVTELGADY 655 Query: 707 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRA 766 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDL LVNEPGI+T+LKNEA+RA Sbjct: 656 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVNEPGIKTVLKNEARRA 715 Query: 767 ESAARSKSAGGRQAQEAGQPAARGKKGAAAKPAAAAAGSKAKGGAKAKAGGARTSTARPG 826 ++ GR A +P A GK K ++ + AK A +K A+T++ Sbjct: 716 DNEQ------GRGA----KPKAGGKAAPPKKTGSSRVTTAAKTTAPSKTKKAKTASV--- 762 Query: 827 EADRKRAASKGFTKGKKKR 845 A++ R A K FTK K++ Sbjct: 763 -AEKTR-APKAFTKSSKRK 779 >ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] gb|ABR89682.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] Length = 816 Score = 1338 bits (3464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 645/771 (83%), Positives = 708/771 (91%), Gaps = 7/771 (0%) Query: 7 LSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 66 +SQ+ Y+IPSREEILGILRT++G+ +A+ LA ALGVKP+EMDGL RRLNAMERDGQIKPD Sbjct: 1 MSQYSYTIPSREEILGILRTATGSHDASTLATALGVKPDEMDGLMRRLNAMERDGQIKPD 60 Query: 67 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 126 RAG+Y+L HS +FI GRVSSHRDGFGFL+PDD S D+FLPEKEMQKV+HGDRVQARI+GT Sbjct: 61 RAGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT 120 Query: 127 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 186 DRRGRPEGTIVEVV RAN+HVIGRLLNENGVW+VAPEDKRIG D++LAG PGKAK GQVV Sbjct: 121 DRRGRPEGTIVEVVARANSHVIGRLLNENGVWVVAPEDKRIGQDIMLAGSPGKAKTGQVV 180 Query: 187 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 246 SVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYGVPHEFSEAAKK +AKLP+EV Sbjct: 181 SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEAAKKAAAKLPNEV 240 Query: 247 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 306 +A DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR G+RLIVAIADVS+YVKPN Sbjct: 241 RAVDLHDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN 300 Query: 307 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 366 +ALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLVCDAVITAKGEIKAYQ Sbjct: 301 EALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITAKGEIKAYQ 360 Query: 367 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 426 FYPAVIHSAARLTYTEVA+IL NTKG EA +R LVPHL +LY V+QALL AR ARGAID Sbjct: 361 FYPAVIHSAARLTYTEVAAILGNTKGIEATKRPALVPHLLNLYGVYQALLQARHARGAID 420 Query: 427 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 486 FETTETYIVCN GKI++ILPRTRN+AH+LIEECMLAANVCAADLL+RH H +LYR+HA Sbjct: 421 FETTETYIVCNEVGKIQQILPRTRNEAHKLIEECMLAANVCAADLLQRHKHHSLYRVHAL 480 Query: 487 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 546 PTKEKL +RTFLKQVGL LGGGD P+ASDYAELMPK+K RPDA+L+QTMLLRSMQQAVY Sbjct: 481 PTKEKLNQVRTFLKQVGLNLGGGDKPTASDYAELMPKIKNRPDALLLQTMLLRSMQQAVY 540 Query: 547 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 606 SP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQGKRYEP+G+D+ LNT +SPA Sbjct: 541 SPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYEPRGMDTSTLNTMLSPA 600 Query: 607 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 666 ARK AQ DKA GK+ + E LAIWEALG+HCSANERRADEASRDVEAWLKCYFIRD Sbjct: 601 ARKKHAQ----DKAEGKQ-KSEGDLAIWEALGIHCSANERRADEASRDVEAWLKCYFIRD 655 Query: 667 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 726 KLGEEFTG ISGVATFGIFVQLD+L+IEG+VHVTELGAD+F++DEARHELRGERTGIRYQ Sbjct: 656 KLGEEFTGVISGVATFGIFVQLDSLFIEGMVHVTELGADHFKFDEARHELRGERTGIRYQ 715 Query: 727 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRA--ESAARSKSA 775 LTDRVTVQVSRVDLDARKIDL LVNEPGIRT+LKNEA+RA E RSK A Sbjct: 716 LTDRVTVQVSRVDLDARKIDLRLVNEPGIRTVLKNEARRADNEHQQRSKKA 766 >emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 820 Score = 1328 bits (3438), Expect = 0.0, Method: Compositional matrix adjust. Identities = 635/791 (80%), Positives = 702/791 (88%), Gaps = 5/791 (0%) Query: 7 LSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 66 +SQ+ Y+IPSREEILGILRT++ + +A +LA LGVK +EMDGL RRLNAMERDGQIKPD Sbjct: 1 MSQYSYTIPSREEILGILRTATSSHDATSLATVLGVKTDEMDGLMRRLNAMERDGQIKPD 60 Query: 67 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 126 R G+Y+L HS +FI GRVSSHRDGFGFL+PDD S D+FLPEKEMQKV+HGDRVQARI+GT Sbjct: 61 RTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT 120 Query: 127 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 186 DRRGRPEGTIVEVV RANTHVIGRLLNENGVWIVAPED+RIG D++L+G PG AK GQVV Sbjct: 121 DRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQRIGQDIMLSGSPGNAKTGQVV 180 Query: 187 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 246 SVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYGVPHEFSE AKK ++KLP EV Sbjct: 181 SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEEAKKAASKLPDEV 240 Query: 247 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 306 +A DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR G+RLIVAIADVS+YVKPN Sbjct: 241 RAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN 300 Query: 307 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 366 + LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLVCDAVIT KGEIKAYQ Sbjct: 301 EPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITTKGEIKAYQ 360 Query: 367 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 426 FYPAV+HSAARLTYTEVA+IL NTKG EAA+R LVPHL +L+ V++ALL AR ARGAID Sbjct: 361 FYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLLNLHGVYKALLQARHARGAID 420 Query: 427 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 486 FETTETYIVCN GKIE+ILPRTRN+AH+LIEECMLAANVCAADLL+RH HP+LYR+HA Sbjct: 421 FETTETYIVCNEVGKIEQILPRTRNEAHKLIEECMLAANVCAADLLERHKHPSLYRVHAL 480 Query: 487 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 546 PTKEKL +RTFLKQVGL L GGD PSASDYAELMPK+K RPDA+L+QTMLLRSMQQAVY Sbjct: 481 PTKEKLNQVRTFLKQVGLNLPGGDKPSASDYAELMPKIKNRPDALLLQTMLLRSMQQAVY 540 Query: 547 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 606 SP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQGKRY PKGID+ ALNT +S A Sbjct: 541 SPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYTPKGIDTSALNTMLSSA 600 Query: 607 ARKAQAQQRAADKAAGK-KPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIR 665 ARK AQ DKA GK + + E LAIWEALG+HCSANERRADEASRDVEAWLKCYFIR Sbjct: 601 ARKKHAQ----DKAEGKQREKAEGDLAIWEALGIHCSANERRADEASRDVEAWLKCYFIR 656 Query: 666 DKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRY 725 DKLGEEFTG ISGV TFGIFVQLD L+IEG+VHVTELGAD+F++DE+RHELRGERTGIRY Sbjct: 657 DKLGEEFTGVISGVTTFGIFVQLDTLFIEGMVHVTELGADHFKFDESRHELRGERTGIRY 716 Query: 726 QLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQEAGQ 785 QLTDRVTVQVSRVDLDARKIDL LV EPGIRT+LKNEA+RA++ + ++ G Q E Sbjct: 717 QLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTVLKNEARRADTEHQQRTKKGEQKSEPKS 776 Query: 786 PAARGKKGAAA 796 K A A Sbjct: 777 ARKSAVKAATA 787 >ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 776 Score = 1269 bits (3283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 607/746 (81%), Positives = 665/746 (89%), Gaps = 5/746 (0%) Query: 52 RRLNAMERDGQIKPDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQ 111 RRLNAMERDGQIKPDR G+Y+L HS +FI GRVSSHRDGFGFL+PDD S D+FLPEKEMQ Sbjct: 2 RRLNAMERDGQIKPDRTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQ 61 Query: 112 KVMHGDRVQARIVGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDV 171 KV+HGDRVQARI+GTDRRGRPEGTIVEVV RANTHVIGRLLNENGVWIVAPED+RIG D+ Sbjct: 62 KVLHGDRVQARIIGTDRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQRIGQDI 121 Query: 172 LLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEF 231 +L+G PG AK GQVVSVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYGVPHEF Sbjct: 122 MLSGSPGNAKTGQVVSVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEF 181 Query: 232 SEAAKKLSAKLPSEVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYR 291 SE AKK ++KLP EV+A DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR G+R Sbjct: 182 SEEAKKAASKLPDEVRAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFR 241 Query: 292 LIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLV 351 LIVAIADVS+YVKPN+ LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLV Sbjct: 242 LIVAIADVSNYVKPNEPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLV 301 Query: 352 CDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEV 411 CDAVIT KGEIKAYQFYPAV+HSAARLTYTEVA+IL NTKG EAA+R LVPHL +L+ V Sbjct: 302 CDAVITTKGEIKAYQFYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLLNLHGV 361 Query: 412 FQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADL 471 ++ALL AR ARGAIDFETTETYIVCN GKIE+ILPRTRN+AH+LIEECMLAANVCAADL Sbjct: 362 YKALLQARHARGAIDFETTETYIVCNEVGKIEQILPRTRNEAHKLIEECMLAANVCAADL 421 Query: 472 LKRHDHPALYRIHAGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAV 531 L+RH HP+LYR+HA PTKEKL +RTFLKQVGL L GGD PSASDYAELMPK+K RPDA+ Sbjct: 422 LERHKHPSLYRVHALPTKEKLNQVRTFLKQVGLNLPGGDKPSASDYAELMPKIKNRPDAL 481 Query: 532 LIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEP 591 L+QTMLLRSMQQAVYSP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQGKRY P Sbjct: 482 LLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYTP 541 Query: 592 KGIDSGALNTSISPAARKAQAQQRAADKAAGK-KPRGESALAIWEALGLHCSANERRADE 650 KGID+ ALNT +S AARK AQ DKA GK + + E LAIWEALG+HCSANERRADE Sbjct: 542 KGIDTSALNTMLSSAARKKHAQ----DKAEGKQREKAEGDLAIWEALGIHCSANERRADE 597 Query: 651 ASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYD 710 ASRDVEAWLKCYFIRDKLGEEFTG ISGV TFGIFVQLD L+IEG+VHVTELGAD+F++D Sbjct: 598 ASRDVEAWLKCYFIRDKLGEEFTGVISGVTTFGIFVQLDTLFIEGMVHVTELGADHFKFD 657 Query: 711 EARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAA 770 E+RHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDL LV EPGIRT+LKNEA+RA++ Sbjct: 658 ESRHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTVLKNEARRADTEH 717 Query: 771 RSKSAGGRQAQEAGQPAARGKKGAAA 796 + ++ G Q E K A A Sbjct: 718 QQRTKKGEQKSEPKSARKSAVKAATA 743 >ref|YP_001857925.1| ribonuclease R [Burkholderia phymatum STM815] gb|ACC70879.1| ribonuclease R [Burkholderia phymatum STM815] Length = 817 Score = 1168 bits (3021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 571/827 (69%), Positives = 665/827 (80%), Gaps = 13/827 (1%) Query: 7 LSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 66 +S++PY IPSREEILG+LRTS A +A AL +K +E +G +RL AMERDGQI+ D Sbjct: 1 MSKYPYPIPSREEILGVLRTSETPLAANDIAEALSIKRQEREGFFKRLAAMERDGQIRLD 60 Query: 67 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 126 + GHY+LTH +F+ GRV HRDG+GFL+ DDG DDLFLP EMQKVMH DRV ARIVG Sbjct: 61 QRGHYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTGEMQKVMHNDRVLARIVGY 120 Query: 127 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 186 DRRGRPEG IVEV +RAN VIGRLLNENG IV PE+KRIGHD+L+ KAK GQVV Sbjct: 121 DRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVVPEEKRIGHDILITQNTKKAKVGQVV 180 Query: 187 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 246 VELT+ PSR++QP+G+++E+LGDIDDPGMEIEIAVRKYGVPHEFS+AA +AKLP EV Sbjct: 181 VVELTDFPSRHSQPLGRVIEVLGDIDDPGMEIEIAVRKYGVPHEFSQAALDAAAKLPDEV 240 Query: 247 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 306 + D+K RVDLRDVPLVTIDGEDARDFDDAVYCEP+K+GR G+RLIVAIADVSHYV P+ Sbjct: 241 RPVDIKHRVDLRDVPLVTIDGEDARDFDDAVYCEPIKVGRGDGFRLIVAIADVSHYVLPD 300 Query: 307 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 366 LDVDA+ERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDR LVCD VITA+GEIKAYQ Sbjct: 301 GGLDVDAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDMVITARGEIKAYQ 360 Query: 367 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 426 FYP V+HSAARLTYTEVA++L NTKGPEA RR L+P L +LY V+++L ARQ RGAID Sbjct: 361 FYPGVMHSAARLTYTEVAAVLTNTKGPEATRRAALLPQLQNLYGVYKSLFAARQKRGAID 420 Query: 427 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 486 F+TTETYIVCNA GKIE+I+PR RNDAH+LIEECMLAANVCAAD +KR+ HP LYR+HAG Sbjct: 421 FDTTETYIVCNAQGKIEQIVPRHRNDAHKLIEECMLAANVCAADFMKRNKHPGLYRVHAG 480 Query: 487 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 546 PT E+L LRTFL+ +GLTLGGGDTP ASDYA LM ++ RPDA ++QTMLLRSMQQAVY Sbjct: 481 PTAERLENLRTFLRGMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQTMLLRSMQQAVY 540 Query: 547 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 606 SP+NIGHFGL+YE+YAHFTSPIRRYPDLLTHRAI A+LQG++YEPK LNT++SP Sbjct: 541 SPENIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYEPKAPHGVELNTALSPR 600 Query: 607 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 666 AR QA+ D+ G RG AIWE LGLHCSANERRADEASRDVEAWLKCYF+RD Sbjct: 601 ARALQAE----DEKRGN--RGRPNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRD 654 Query: 667 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 726 KLGEE+ G +SGV +FGIFVQLDAL+IEGLVHVTELG+DYFQYDE ++ELRGERTGIRY+ Sbjct: 655 KLGEEYGGMVSGVTSFGIFVQLDALFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYR 714 Query: 727 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGG---RQAQEA 783 L+DRV VQVSRVDLDARKID LV + T +K++A RA +A ++ GG R + A Sbjct: 715 LSDRVRVQVSRVDLDARKIDFRLVRD----TPVKSQAHRATTADKASDLGGPRVRSIERA 770 Query: 784 GQPAARGKKGAAAKPAAAAAGSKAKGGAKAKAGGARTSTARPGEADR 830 Q +K A A+ AA A+ A +K A S+A+P R Sbjct: 771 AQAEGGRRKKAPAQTAAVKEARAARKAAVSKKRAASKSSAKPARKKR 817 >ref|ZP_02883392.1| ribonuclease R [Burkholderia graminis C4D1M] gb|EDT10824.1| ribonuclease R [Burkholderia graminis C4D1M] Length = 831 Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/833 (68%), Positives = 671/833 (80%), Gaps = 15/833 (1%) Query: 5 KLLSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIK 64 K LS+FPY IPSREEILG+LRTS A +A AL +K +E +G +RL AMERDGQI+ Sbjct: 9 KPLSKFPYPIPSREEILGVLRTSETPLAANEIAEALSIKRQEREGFFKRLGAMERDGQIR 68 Query: 65 PDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIV 124 D+ Y+LTH +F+ GRV HRDG+GFL+ DDG DDLFLP EMQKVMH DRV ARIV Sbjct: 69 LDQRNLYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTAEMQKVMHNDRVLARIV 128 Query: 125 GTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQ 184 G DRRGRPEG IVEV +RAN VIGRLLNENG IVAPEDKRIGHD+L+ KAK GQ Sbjct: 129 GYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILITQNTKKAKVGQ 188 Query: 185 VVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPS 244 VV VELT+ PSR++QP+G++ E+LGDIDDPGMEIEIAVRKYGVPHEFS A +AKLP Sbjct: 189 VVVVELTDFPSRHSQPLGRVAEVLGDIDDPGMEIEIAVRKYGVPHEFSPDALAEAAKLPD 248 Query: 245 EVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVK 304 EV+ D++ R+DLRDVPLVTIDGEDARDFDDAVYCEP+K+GR G+RLIVAIADVSHYV Sbjct: 249 EVRPTDVRHRIDLRDVPLVTIDGEDARDFDDAVYCEPIKVGRGDGFRLIVAIADVSHYVH 308 Query: 305 PNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKA 364 P A+D DA+ERSTSVYFPRRVIPMLPEKLSNGLCSLNP+VDR LVCD ++TA+GE+KA Sbjct: 309 PKSAIDADAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPNVDRCVLVCDMIVTARGEVKA 368 Query: 365 YQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGA 424 YQFYP V+HSAARLTYTEVA++L NTKGPEAARR L+P L +LY V++AL ARQ RGA Sbjct: 369 YQFYPGVMHSAARLTYTEVAAVLKNTKGPEAARRAALLPQLQNLYGVYKALFAARQKRGA 428 Query: 425 IDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIH 484 IDF+TTETYIVCNA GKIE+I+PRTRN+AH+LIEECMLAANVCAADLLKR+ HP L+R+H Sbjct: 429 IDFDTTETYIVCNAQGKIEQIVPRTRNEAHKLIEECMLAANVCAADLLKRNKHPGLFRVH 488 Query: 485 AGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQA 544 AGPT EKL LRTFL+ +GLTLGG D P ASDYA LM +++ RPDA ++QTMLLRSMQQA Sbjct: 489 AGPTAEKLENLRTFLRGMGLTLGGNDKPHASDYAALMAQIRDRPDAQMLQTMLLRSMQQA 548 Query: 545 VYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSIS 604 VYSPDNIGHFGL+YE+YAHFTSPIRRYPDLLTHRAI A+LQG++Y+P+ LNT++S Sbjct: 549 VYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYQPEPPAGVVLNTALS 608 Query: 605 PAARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFI 664 P AR A Q+A D+ G+ RG + +AIWE LGLHCSANERRADEASRDVEAWLKCYF+ Sbjct: 609 PRAR---AMQQADDEKTGRT-RG-TNVAIWEELGLHCSANERRADEASRDVEAWLKCYFM 663 Query: 665 RDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIR 724 RDKLGEE+ G ++GV +FGIFVQLD+L+IEGLVHVTELG+DYFQYDE ++ELRGERTGIR Sbjct: 664 RDKLGEEYGGMVNGVTSFGIFVQLDSLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIR 723 Query: 725 YQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKS-AGGRQAQEA 783 Y+L+DRV VQVSRVDLDARKID LV + T +K R+ SA +S + GG + +E Sbjct: 724 YRLSDRVRVQVSRVDLDARKIDFRLVRD----TPIKPHPARSVSADKSSADNGGPRVREL 779 Query: 784 GQP----AARGKKGAAAKPAAAAAGSKAKGGAKAKAGGARTSTARPGEADRKR 832 P AA G + A P +AA +A+G AK K GGA A A +KR Sbjct: 780 SSPEGGAAAPGARRKRAAPVQSAAVKEARGAAK-KQGGASAKAASRQTARKKR 831 >ref|YP_296280.1| RNAse R [Ralstonia eutropha JMP134] gb|AAZ61436.1| RNAse R [Ralstonia eutropha JMP134] Length = 870 Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/757 (73%), Positives = 631/757 (83%), Gaps = 6/757 (0%) Query: 5 KLLSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIK 64 K L+Q Y IPSREEILG+LRTS +A +A AL V +E DG +RL AMERDGQ++ Sbjct: 7 KKLNQNNYPIPSREEILGVLRTSGSPLSAGDIAKALSVTRKEHDGFQKRLAAMERDGQVE 66 Query: 65 PDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIV 124 +R G Y+L H P+F+ GRV HRDGFGFL+ DDG DD+FLPE+E+QK MH DR Q R+V Sbjct: 67 LNRKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVV 126 Query: 125 GTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPP---GKAK 181 G DRRGRPEG IVE++ERAN +VIGRLL+E GV +VAPEDKRIG D+L+ PP GKA+ Sbjct: 127 GYDRRGRPEGQIVEILERANRYVIGRLLSEGGVLVVAPEDKRIGQDILI--PPKAQGKAR 184 Query: 182 AGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAK 241 GQVVSVEL E P RY QPVG++VE+LGDIDDPGMEIEIAVRKYGVPH FS+AA K ++ Sbjct: 185 VGQVVSVELIEFPDRYVQPVGRVVEVLGDIDDPGMEIEIAVRKYGVPHAFSQAAAKEASA 244 Query: 242 LPSEVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSH 301 LP EV+ DL R+DLRDVPLVTIDGEDARDFDDAVYCEPVK+GR+KG+RLIVAIADVSH Sbjct: 245 LPDEVRQTDLDHRIDLRDVPLVTIDGEDARDFDDAVYCEPVKMGRSKGWRLIVAIADVSH 304 Query: 302 YVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGE 361 YV+P LD DAL+R+TSVYFPRRVIPMLPEKLSNGLCSLNP VDRL +VCDAVITAKGE Sbjct: 305 YVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPQVDRLCMVCDAVITAKGE 364 Query: 362 IKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQA 421 +K YQFYPAV+HSAARLTY EV S+L+NTKGPEA +R LVPHL +LYE+FQ LL AR+ Sbjct: 365 LKGYQFYPAVMHSAARLTYNEVWSVLSNTKGPEAHKRAELVPHLQNLYELFQVLLKARRE 424 Query: 422 RGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALY 481 RGAIDF+TTETYIVCNA GKIE+ILPRTRNDAHRLIEECML ANVCAAD L+R HPALY Sbjct: 425 RGAIDFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALY 484 Query: 482 RIHAGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSM 541 RIHAGP++EKL LR FLK GL+LGGGD P ASDYAE+M K+K+RPDA ++QTMLLRSM Sbjct: 485 RIHAGPSEEKLKNLREFLKTSGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSM 544 Query: 542 QQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNT 601 QQAVYSPDNIGHFGL+YE+YAHFTSPIRRYPDLL HRAIKAVL +Y+P LNT Sbjct: 545 QQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTELNT 604 Query: 602 SISPAARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKC 661 +ISP AR+ QA+ A KA R AIW+ LGLHCSANERRADEASRDVEAWLKC Sbjct: 605 AISPKARRLQAKD-AEQKAELTAARARRNEAIWDELGLHCSANERRADEASRDVEAWLKC 663 Query: 662 YFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERT 721 YF+RDKLG +F GT+S V +FGIFVQLD LY+EGLVHVTELG+DYFQYDEAR+ELRGERT Sbjct: 664 YFMRDKLGSDFAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERT 723 Query: 722 GIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTL 758 GIRY+LTDRV VQVSRVDLDARKID LV EP +TL Sbjct: 724 GIRYRLTDRVRVQVSRVDLDARKIDFRLVQEPSAKTL 760 >ref|ZP_03264556.1| ribonuclease R [Burkholderia sp. H160] gb|EEA03920.1| ribonuclease R [Burkholderia sp. H160] Length = 831 Score = 1159 bits (2999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/814 (69%), Positives = 658/814 (80%), Gaps = 14/814 (1%) Query: 5 KLLSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIK 64 K LS+FPY IPSREEILG+LRTS A +A AL +K +E +G +RL AMERDGQI+ Sbjct: 9 KPLSKFPYPIPSREEILGVLRTSETPLAANDIAEALSIKRQEREGFFKRLGAMERDGQIR 68 Query: 65 PDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIV 124 D+ Y+LTH +F+ GRV HRDG+GFL+ DDG DDLFLP EMQKVMH DRV ARIV Sbjct: 69 LDQRNLYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPNGEMQKVMHNDRVLARIV 128 Query: 125 GTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQ 184 G DRRGRPEG IVEV +RAN VIGRLLNENG IVAPEDKRIGHD+L+ KAK GQ Sbjct: 129 GYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILITQNTRKAKVGQ 188 Query: 185 VVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPS 244 VV VELT+ PSR++QP+G++VE+LGDIDDPGMEIEIAVRKYGVPHEFSEAA +AKLP Sbjct: 189 VVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSEAALGEAAKLPD 248 Query: 245 EVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVK 304 EV+ AD++ R+DLRDVPLVTIDGEDARDFDDAVYCEPVK+GR G+RLIVAIADVSHYV Sbjct: 249 EVRPADIRHRIDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGFRLIVAIADVSHYVL 308 Query: 305 PNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKA 364 P LD DA+ERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDR LVCD ++TA+G++K Sbjct: 309 PQSGLDTDAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDMIVTARGDVKG 368 Query: 365 YQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGA 424 YQFYP V+HSAARLTYTEVA++L NTKGPEA RR L+P L +LY V++AL ARQ RGA Sbjct: 369 YQFYPGVMHSAARLTYTEVAAVLKNTKGPEATRRAALLPQLQNLYGVYKALFAARQKRGA 428 Query: 425 IDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIH 484 IDF+TTETYIVCNA GKIE+I+PRTRNDAH+LIEECMLAANVCAAD LKRH HP L+R+H Sbjct: 429 IDFDTTETYIVCNAQGKIEQIVPRTRNDAHKLIEECMLAANVCAADFLKRHKHPGLFRVH 488 Query: 485 AGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQA 544 AGP+ EKL LRTFL+ +GLTLGGGD+P ASDYA LM +++ RPDA ++QTMLLRSMQQA Sbjct: 489 AGPSAEKLENLRTFLRGMGLTLGGGDSPHASDYAALMAQIRDRPDASMLQTMLLRSMQQA 548 Query: 545 VYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSIS 604 VYSPDNIGHFGL+YE+YAHFTSPIRRYPDLLTHRAI A+LQG++Y+P+ LNT++S Sbjct: 549 VYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYQPQPPHGVELNTALS 608 Query: 605 PAARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFI 664 P AR A Q+A ++ G + R + +AIWE LGLHCSANERRADEASRDVEAWLKCYF+ Sbjct: 609 PRAR---AMQQADEEKRGARGRANN-VAIWEELGLHCSANERRADEASRDVEAWLKCYFM 664 Query: 665 RDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIR 724 RDKLGEE+ G I+GV +FGIFVQLD+L+IEGLVHVTELG+DYFQYDE ++ELRGERTGIR Sbjct: 665 RDKLGEEYGGMINGVTSFGIFVQLDSLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIR 724 Query: 725 YQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGR------ 778 Y+L+DRV VQVSRVDLDARKID LV + T +K A R +A + + AG R Sbjct: 725 YRLSDRVRVQVSRVDLDARKIDFRLVRD----TPIKPPAPRGIAADKGEGAGPRVRALPS 780 Query: 779 QAQEAGQPAARGKKGAAAKPAAAAAGSKAKGGAK 812 A P R KK A A+ AA A+G AK Sbjct: 781 AENVAAMPGPRRKKAAPAQSAAVKEARAARGVAK 814 >ref|YP_002005900.1| rnase r, 3'-5' exoribonuclease [Cupriavidus taiwanensis LMG 19424] emb|CAQ69835.1| RNase R, 3'-5' exoribonuclease [Cupriavidus taiwanensis LMG 19424] Length = 873 Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/797 (70%), Positives = 648/797 (81%), Gaps = 8/797 (1%) Query: 5 KLLSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIK 64 K L+Q Y IPSREEILG+LRTS Q+A +A AL V +E DG +RL AMERDGQI+ Sbjct: 7 KKLNQNNYPIPSREEILGVLRTSGSPQSAGDIAKALAVTRKEHDGFQKRLAAMERDGQIE 66 Query: 65 PDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIV 124 +R G Y+L H P+F+ GRV HRDGFGFL+ DDG DD+FLPE+E+QK MH DR Q R+V Sbjct: 67 LNRKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVV 126 Query: 125 GTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPP---GKAK 181 G DRRGRPEG IVE++ERAN VIGRLL+E GV +VAPEDKRI D+L+ PP GKA+ Sbjct: 127 GYDRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILI--PPKAQGKAR 184 Query: 182 AGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAK 241 GQVVSVELTE P RY QPVG++VE+LG+IDDPGMEIEIAVRKYGVPH+FS AA + +A Sbjct: 185 VGQVVSVELTEFPDRYVQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHQFSPAAAQEAAG 244 Query: 242 LPSEVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSH 301 LP EV+ ADL R+DLRD+PLVTIDGEDARDFDDAVYCEPV+IGR KG+RLIVAIADVSH Sbjct: 245 LPDEVRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVRIGRAKGWRLIVAIADVSH 304 Query: 302 YVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGE 361 YV+P LD DAL+R+TSVYFPRRVIPMLPEKLSNGLCSLNP VDRL +VCDAVITAKGE Sbjct: 305 YVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLCMVCDAVITAKGE 364 Query: 362 IKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQA 421 +K YQFYPAV+HS ARLTY EV S+L+NTKGPEA +R LVPHL +LYE+FQ LL AR+A Sbjct: 365 LKGYQFYPAVMHSTARLTYNEVWSVLSNTKGPEAHKRSELVPHLQNLYELFQVLLKARRA 424 Query: 422 RGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALY 481 RGAIDF+TTETYIVCNA GKIE+ILPRTRNDAHRLIEECML ANVCAAD L+R HPALY Sbjct: 425 RGAIDFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALY 484 Query: 482 RIHAGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSM 541 RIHAGP+ EKL LR FL+ GL+LGGGD P ASDYAE+M K+K+RPDA ++QTMLLRSM Sbjct: 485 RIHAGPSDEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSM 544 Query: 542 QQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNT 601 QQAVYSPDNIGHFGL+YE+YAHFTSPIRRYPDLL HRAIKAVL +Y+P LNT Sbjct: 545 QQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTELNT 604 Query: 602 SISPAARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKC 661 +ISP AR+ QA+ A KA R AIW+ LGLHCSANERRADEASRDVEAWLKC Sbjct: 605 AISPKARRLQAKD-AEQKAELTAARARRNEAIWDELGLHCSANERRADEASRDVEAWLKC 663 Query: 662 YFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERT 721 YF+RDKLG ++ GT+S V +FGIFVQLD LY+EGLVHVTELG+DYFQYDEAR+ELRGERT Sbjct: 664 YFMRDKLGSDYAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERT 723 Query: 722 GIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQ 781 GIRY+LTDRV VQVSRVDLDARKID LV EP +T L+ AE+ R +A A+ Sbjct: 724 GIRYRLTDRVRVQVSRVDLDARKIDFRLVQEPSAKT-LRARVTGAETQPRVPAAHAVPAR 782 Query: 782 EAGQPAARGKKGAAAKP 798 + G+ A G ++KP Sbjct: 783 KKGRQLA-ALLGGSSKP 798