BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0017.p (640 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775245.1| hypothetical protein Hsero_1827 [Herbaspiril... 1150 0.0 >ref|YP_003775245.1| hypothetical protein Hsero_1827 [Herbaspirillum seropedicae SmR1] gb|ADJ63337.1| hypothetical protein Hsero_1827 [Herbaspirillum seropedicae SmR1] Length = 2903 Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/584 (99%), Positives = 582/584 (99%) Query: 1 VPQGSNPVRLELKDLETATGSNDFGFANVALTHLDHAAFSPSKHNLGLADFSSGYSLSND 60 VPQGSNPVRLELKDLETATGSNDFGFANVALTHLDHAAFSPSKHNLGLADFSSGYSLSND Sbjct: 807 VPQGSNPVRLELKDLETATGSNDFGFANVALTHLDHAAFSPSKHNLGLADFSSGYSLSND 866 Query: 61 LATFGGGGTAIVTTLAPEWGFITRNGPDGAGSKFMVVDGATDASKAFWRSDVSGLVAGEK 120 LATFGGGGTAIVTTLAPEWGFITRNGPDGAGSKFMVVDGATDASKAFWRSDVSGLVAGEK Sbjct: 867 LATFGGGGTAIVTTLAPEWGFITRNGPDGAGSKFMVVDGATDASKAFWRSDVSGLVAGEK 926 Query: 121 CTLDFSIINSGDPAPARLQLYVNGVATGSFVTSSRSEGWANRSISFVAPQGSGPVRLELK 180 CTLDFSIINSGDPAPARLQLYVNGVATGSFVTSSRSEGWANRSISFVAPQGSGPVRLELK Sbjct: 927 CTLDFSIINSGDPAPARLQLYVNGVATGSFVTSSRSEGWANRSISFVAPQGSGPVRLELK 986 Query: 181 DLETVAAYNDFGFANVTLTSATSVWTDAAVTAPTITAPIVVNDFSTDYRLTSDPTKFDGA 240 DLETVAAYNDFGFANVTLTSATSVWTDAAVTAPTITAPIVVNDFSTDYRLTSDPTKFDGA Sbjct: 987 DLETVAAYNDFGFANVTLTSATSVWTDAAVTAPTITAPIVVNDFSTDYRLTSDPTKFDGA 1046 Query: 241 GSVTQTTLAPDWGFATRTGPTGPGSKFLLVDGDSLASKVFWRSDVSGLTAGDNYTIHLSL 300 GSVTQTTLAPDWGFATRTGPTGPGSKFLLVDGDSLASKVFWRSDVSGLTAGDNYTIHLSL Sbjct: 1047 GSVTQTTLAPDWGFATRTGPTGPGSKFLLVDGDSLASKVFWRSDVSGLTAGDNYTIHLSL 1106 Query: 301 LNGKGSAPARLQLYVNGVAQSDVVSSKGSEAWADRSISFQVPWDSTKVRLEFKDLETASD 360 LNGKGSAPARLQLYVNGVAQSDVVSSKGSEAWADRSISFQVPWDSTKVRLEFKDLETASD Sbjct: 1107 LNGKGSAPARLQLYVNGVAQSDVVSSKGSEAWADRSISFQVPWDSTKVRLEFKDLETASD 1166 Query: 361 SNDFGFGNVYLTHDAASASRSTRTVTDFSTDYQRASDASPISGAGQIYETRNMPSYWKMT 420 SNDFGFGNVYLTHDAASASRSTRTVTDFSTDYQRASDASPISGAGQIYETRNMPSYWKMT Sbjct: 1167 SNDFGFGNVYLTHDAASASRSTRTVTDFSTDYQRASDASPISGAGQIYETRNMPSYWKMT 1226 Query: 421 SSVGPTGPGSKFIQVDGASDPSKAFWRHYFDDLAPNQLHTVQFSVINGGNGTLARVQLYV 480 SSVGPTGPGSKFIQVDGASDPSKAFWRHYFDDLAPNQLHTVQFSVINGGNGTLARVQLYV Sbjct: 1227 SSVGPTGPGSKFIQVDGASDPSKAFWRHYFDDLAPNQLHTVQFSVINGGNGTLARVQLYV 1286 Query: 481 NGVAMGDPLAPETSQGWVTGSLTFRTPASGPVRLEFKDLETAGGANDFCFGNVTLQSNPA 540 NGVAMGDPLAPE SQGWVTGSLTFRTPASGPVRLEFKDLETAGGANDFCFGNVTLQSNPA Sbjct: 1287 NGVAMGDPLAPEASQGWVTGSLTFRTPASGPVRLEFKDLETAGGANDFCFGNVTLQSNPA 1346 Query: 541 VSASAASAAPTAPVLASAPAFTRNVSDFSTDYQRASASSSITRV 584 VS+ AASAAPTAPVLASAPAFTRNVSDFSTDYQRASASSSITRV Sbjct: 1347 VSSDAASAAPTAPVLASAPAFTRNVSDFSTDYQRASASSSITRV 1390 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 317/587 (54%), Positives = 378/587 (64%), Gaps = 33/587 (5%) Query: 2 PQGSNPVRLELKDLETATGSNDFGFANVALTH-----LDHAAFSPS-KHNLGLADFSSGY 55 PQGS PVRLELKDLET NDFGFANV LT D A +P+ + + DFS+ Y Sbjct: 975 PQGSGPVRLELKDLETVAAYNDFGFANVTLTSATSVWTDAAVTAPTITAPIVVNDFSTDY 1034 Query: 56 SLSNDLATFGGGGTAIVTTLAPEWGFITRNGPDGAGSKFMVVDGATDASKAFWRSDVSGL 115 L++D F G G+ TTLAP+WGF TR GP G GSKF++VDG + ASK FWRSDVSGL Sbjct: 1035 RLTSDPTKFDGAGSVTQTTLAPDWGFATRTGPTGPGSKFLLVDGDSLASKVFWRSDVSGL 1094 Query: 116 VAGEKCTLDFSIINSGDPAPARLQLYVNGVATGSFVTSSRSEGWANRSISFVAPQGSGPV 175 AG+ T+ S++N APARLQLYVNGVA V+S SE WA+RSISF P S V Sbjct: 1095 TAGDNYTIHLSLLNGKGSAPARLQLYVNGVAQSDVVSSKGSEAWADRSISFQVPWDSTKV 1154 Query: 176 RLELKDLETVAAYNDFGFANVTLTSATSVWTDAAVTAPTITAPIVVNDFSTDYRLTSDPT 235 RLE KDLET + NDFGF NV LT DAA + + V DFSTDY+ SD + Sbjct: 1155 RLEFKDLETASDSNDFGFGNVYLTH------DAASASRSTR---TVTDFSTDYQRASDAS 1205 Query: 236 KFDGAGSVTQTTLAPD-WGFATRTGPTGPGSKFLLVDGDSLASKVFWRSDVSGLTAGDNY 294 GAG + +T P W + GPTGPGSKF+ VDG S SK FWR L + Sbjct: 1206 PISGAGQIYETRNMPSYWKMTSSVGPTGPGSKFIQVDGASDPSKAFWRHYFDDLAPNQLH 1265 Query: 295 TIHLSLLNGKGSAPARLQLYVNGVAQSDVVSSKGSEAWADRSISFQVPWDSTKVRLEFKD 354 T+ S++NG AR+QLYVNGVA D ++ + S+ W S++F+ P S VRLEFKD Sbjct: 1266 TVQFSVINGGNGTLARVQLYVNGVAMGDPLAPEASQGWVTGSLTFRTP-ASGPVRLEFKD 1324 Query: 355 LETASDSNDFGFGNVYLTHDA----------------ASASRSTRTVTDFSTDYQRASDA 398 LETA +NDF FGNV L + ASA TR V+DFSTDYQRAS + Sbjct: 1325 LETAGGANDFCFGNVTLQSNPAVSSDAASAAPTAPVLASAPAFTRNVSDFSTDYQRASAS 1384 Query: 399 SPISGAGQIYETRNMPSYWKMTSSVGPTGPGSKFIQVDGASDPSKAFWRHYFDDLAPNQL 458 S I+ G++YE NMPSYWKM S GP GPGSKF+Q+DG D SKAFWRH F+DL+P+++ Sbjct: 1385 SSITRVGEVYEITNMPSYWKMASQEGPAGPGSKFLQIDGGGDASKAFWRHSFNDLSPHEM 1444 Query: 459 HTVQFSVINGGNGTLARVQLYVNGVAMGDPLAPETSQGWVTGSLTFRTPASGPVRLEFKD 518 HTVQFSVINGG+G LARVQLYVNGVA GDP++P+ SQGWVTGS++FRTP SGPV LEFKD Sbjct: 1445 HTVQFSVINGGDGALARVQLYVNGVATGDPVSPQASQGWVTGSVSFRTPDSGPVTLEFKD 1504 Query: 519 LETAGGANDFCFGNVTLQSNPAVSASAASAAPTAPVLASAPAFTRNV 565 LETA ANDFCFGNV L A T V A + R+V Sbjct: 1505 LETASAANDFCFGNVVLSHGVTSIEGALPLRETPTVQGVAQDWVRDV 1551 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 297/558 (53%), Positives = 360/558 (64%), Gaps = 33/558 (5%) Query: 35 DHAAFSPSKHNLGLADFSSGYSLSNDLATFGGGGTAIVTTLAPEWGFITRNGPDGAGSKF 94 ++ S N GL DF+S Y LS++ F G+A +TTLAP+WGF TRNGP+GAGSKF Sbjct: 674 NNGGISNGNFNRGLVDFTSDYRLSDNPTDFNSVGSATLTTLAPDWGFATRNGPNGAGSKF 733 Query: 95 MVVDGATDASKAFWRSDVSGLVAGEKCTLDFSIINSGDPAPARLQLYVNGVATGSFVTSS 154 ++VDGA+DASKAFWRSDV+GLVAG+ TL+FS+IN APAR+QLYVNGVAT +FVTS Sbjct: 734 LLVDGASDASKAFWRSDVAGLVAGDTYTLNFSMINGNGAAPARVQLYVNGVATQAFVTSK 793 Query: 155 RSEGWANRSISFVAPQGSGPVRLELKDLETVAAYNDFGFANVTLTSATSVWTDAAVTAPT 214 SEGW NRSI+F PQGS PVRLELKDLET NDFGFANV LT D A +P+ Sbjct: 794 GSEGWVNRSIAFKVPQGSNPVRLELKDLETATGSNDFGFANVALTH-----LDHAAFSPS 848 Query: 215 ITAPIVVNDFSTDYRLTSDPTKFDGAGSVTQTTLAPDWGFATRTGPTGPGSKFLLVDGDS 274 + + DFS+ Y L++D F G G+ TTLAP+WGF TR GP G GSKF++VDG + Sbjct: 849 -KHNLGLADFSSGYSLSNDLATFGGGGTAIVTTLAPEWGFITRNGPDGAGSKFMVVDGAT 907 Query: 275 LASKVFWRSDVSGLTAGDNYTIHLSLLNGKGSAPARLQLYVNGVAQSDVVSSKGSEAWAD 334 ASK FWRSDVSGL AG+ T+ S++N APARLQLYVNGVA V+S SE WA+ Sbjct: 908 DASKAFWRSDVSGLVAGEKCTLDFSIINSGDPAPARLQLYVNGVATGSFVTSSRSEGWAN 967 Query: 335 RSISFQVPWDSTKVRLEFKDLETASDSNDFGFGNVYLTH------DAASASRSTR---TV 385 RSISF P S VRLE KDLET + NDFGF NV LT DAA + + V Sbjct: 968 RSISFVAPQGSGPVRLELKDLETVAAYNDFGFANVTLTSATSVWTDAAVTAPTITAPIVV 1027 Query: 386 TDFSTDYQRASDASPISGAGQIYETRNMPSYWKMTSSVGPTGPGSKFIQVDGASDPSKAF 445 DFSTDY+ SD + GAG + +T P W + GPTGPGSKF+ VDG S SK F Sbjct: 1028 NDFSTDYRLTSDPTKFDGAGSVTQTTLAPD-WGFATRTGPTGPGSKFLLVDGDSLASKVF 1086 Query: 446 WRHYFDDLAPNQLHTVQFSVINGGNGTLARVQLYVNGVAMGDPLAPETSQGWVTGSLTFR 505 WR L +T+ S++NG AR+QLYVNGVA D ++ + S+ W S++F+ Sbjct: 1087 WRSDVSGLTAGDNYTIHLSLLNGKGSAPARLQLYVNGVAQSDVVSSKGSEAWADRSISFQ 1146 Query: 506 TP-ASGPVRLEFKDLETAGGANDFCFGNVTLQSNPAVSASAASAAPTAPVLASAPAFTRN 564 P S VRLEFKDLETA +NDF FGNV L + ASA TR Sbjct: 1147 VPWDSTKVRLEFKDLETASDSNDFGFGNVYLTHDA----------------ASASRSTRT 1190 Query: 565 VSDFSTDYQRASASSSIT 582 V+DFSTDYQRAS +S I+ Sbjct: 1191 VTDFSTDYQRASDASPIS 1208 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/240 (42%), Positives = 127/240 (52%), Gaps = 15/240 (6%) Query: 5 SNPVRLELKDLETATGSNDFGFANVAL-------------THLDHAAFSPSKHNLGLADF 51 S PVRLE KDLETA G+NDF F NV L S ++DF Sbjct: 1315 SGPVRLEFKDLETAGGANDFCFGNVTLQSNPAVSSDAASAAPTAPVLASAPAFTRNVSDF 1374 Query: 52 SSGYSLSNDLATFGGGGTAI-VTTLAPEWGFITRNGPDGAGSKFMVVDGATDASKAFWRS 110 S+ Y ++ ++ G +T + W ++ GP G GSKF+ +DG DASKAFWR Sbjct: 1375 STDYQRASASSSITRVGEVYEITNMPSYWKMASQEGPAGPGSKFLQIDGGGDASKAFWRH 1434 Query: 111 DVSGLVAGEKCTLDFSIINSGDPAPARLQLYVNGVATGSFVTSSRSEGWANRSISFVAPQ 170 + L E T+ FS+IN GD A AR+QLYVNGVATG V+ S+GW S+SF P Sbjct: 1435 SFNDLSPHEMHTVQFSVINGGDGALARVQLYVNGVATGDPVSPQASQGWVTGSVSFRTPD 1494 Query: 171 GSGPVRLELKDLETVAAYNDFGFANVTLTSATSVWTDAAVTAPTITAPIVVNDFSTDYRL 230 SGPV LE KDLET +A NDF F NV L+ + A T T V D+ D R+ Sbjct: 1495 -SGPVTLEFKDLETASAANDFCFGNVVLSHGVTSIEGALPLRETPTVQGVAQDWVRDVRV 1553