BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0013.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775237.1| transcription regulator protein [Herbaspiril... 462 e-128 ref|ZP_07774905.1| transcriptional regulator, LysR family [Pseud... 271 5e-71 ref|YP_002872040.1| putative LysR family regulatory protein [Pse... 260 1e-67 ref|YP_004444163.1| transcriptional regulator, LysR family [Agro... 243 2e-62 gb|EGP55533.1| LysR family transcriptional regulator [Agrobacter... 242 3e-62 ref|YP_002976028.1| LysR family transcriptional regulator [Rhizo... 237 1e-60 ref|YP_372588.1| LysR family transcriptional regulator [Burkhold... 236 2e-60 ref|YP_624034.1| LysR family transcriptional regulator [Burkhold... 236 3e-60 ref|NP_356654.1| LysR family transcriptional regulator [Agrobact... 235 4e-60 ref|ZP_04941900.1| regulatory protein, LysR [Burkholderia cenoce... 234 8e-60 >ref|YP_003775237.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63329.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 235/236 (99%), Positives = 236/236 (100%) Query: 1 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVR 60 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSA+SLKLKKLEQRLGRRLLERTPRQVR Sbjct: 1 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAVSLKLKKLEQRLGRRLLERTPRQVR 60 Query: 61 LSAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGV 120 LSAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGV Sbjct: 61 LSAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGV 120 Query: 121 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALR 180 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALR Sbjct: 121 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALR 180 Query: 181 VATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 VATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP Sbjct: 181 VATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 >ref|ZP_07774905.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gb|EFQ63853.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 290 Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 146/248 (58%), Positives = 179/248 (72%), Gaps = 1/248 (0%) Query: 3 KPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLS 62 KPLD+D VQAFVL AD SFTRAAEAL+++Q+AISLKLK+LE+RLG RLLERTPRQVRLS Sbjct: 6 KPLDIDTVQAFVLVADFASFTRAAEALDTSQAAISLKLKRLEERLGYRLLERTPRQVRLS 65 Query: 63 AEGQQFLPAARELLAAHERALEQL-DQGPVRFSVGISDHVAGASLPRALAQVHALDPGVV 121 G+ F+ AAR LL AHERAL + P R +GISDHVAG LP L+++ A DP V+ Sbjct: 66 PRGELFIVAARALLNAHERALGDMGSTAPRRLVIGISDHVAGPDLPIWLSRMAAYDPLVI 125 Query: 122 VEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRV 181 +EVR+ASS DLM ++R ELDAVIVR E + G+++ ER GWFA P Q G LR+ Sbjct: 126 LEVRIASSRDLMAAFDRNELDAVIVRNEGDRQDGEVLAVERFGWFAAPAWQHSPGQPLRM 185 Query: 182 ATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAPGXKNL 241 AT + C +R L+ R LD A I W+EVFVGGG++AVGAAVSAGL V+AL YR AP Sbjct: 186 ATMAAPCGVRHLATRALDTACIDWIEVFVGGGVMAVGAAVSAGLGVAALAYRVAPAGAVD 245 Query: 242 LKTQKRIP 249 + Q +P Sbjct: 246 VSEQYDLP 253 >ref|YP_002872040.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY48669.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 288 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/248 (56%), Positives = 178/248 (71%), Gaps = 1/248 (0%) Query: 3 KPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLS 62 KPLD+D VQAFV AD SFTRAAEAL+++Q+AISLKLK+LE+RLG RLLERTPR VRLS Sbjct: 6 KPLDIDTVQAFVRVADFASFTRAAEALDTSQAAISLKLKRLEERLGYRLLERTPRHVRLS 65 Query: 63 AEGQQFLPAARELLAAHERALEQLDQGPVR-FSVGISDHVAGASLPRALAQVHALDPGVV 121 +G+ F+ AAR LL AHERAL + +R +GISDHVAG LP L+++ A DP V+ Sbjct: 66 PQGEHFIVAARALLNAHERALGDMASHALRRLVIGISDHVAGPDLPTWLSRLAAYDPLVI 125 Query: 122 VEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRV 181 +EVR+ASS +L+ ++R ELDAVIVR E + G+++ ER GWFA P Q G LR+ Sbjct: 126 LEVRIASSRELVAAFDRNELDAVIVRNEGDRQDGEVLAVERFGWFAAPTWQHSPGTPLRM 185 Query: 182 ATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAPGXKNL 241 AT + C +R L+ R LDAA I W EVFVGGG++AVGAAVSAGL V+AL +R AP Sbjct: 186 ATMAAPCGVRHLATRALDAARIDWTEVFVGGGVMAVGAAVSAGLGVAALAHRVAPSGAVD 245 Query: 242 LKTQKRIP 249 + Q +P Sbjct: 246 VSEQYGLP 253 >ref|YP_004444163.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gb|ADY67072.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 296 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 130/232 (56%), Positives = 165/232 (71%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD+DAVQAFV ADL SFTRAAE L +TQ AIS+KLK+LE RLG+RLLERTPR VRLSA+ Sbjct: 18 LDVDAVQAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRLSAQ 77 Query: 65 GQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVVEV 124 G FL ARE LAAH+RA+ L RF +GI+ HVAG +P LA+++A DPG+ +EV Sbjct: 78 GAVFLTPAREFLAAHDRAMAGLFSTRRRFGLGIAAHVAGPEVPTLLARLNAHDPGLTIEV 137 Query: 125 RVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVATF 184 R+ +S L+ ++RGE+DA I+RRE R G+++ E GWFA P + G LR+A Sbjct: 138 RMDNSRTLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWFAAPQFEHRQGEPLRLAAL 197 Query: 185 SQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 S AC +R+++ R LD+A IAW EVF+GG V AAVSAGLA+SA R AP Sbjct: 198 SPACGVRDIAARALDSAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAP 249 >gb|EGP55533.1| LysR family transcriptional regulator [Agrobacterium tumefaciens F2] Length = 284 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 130/232 (56%), Positives = 165/232 (71%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD+DAVQAFV ADL SFTRAAE L +TQ AIS++LK+LE RLG+RLLERTPR VRLSA+ Sbjct: 4 LDVDAVQAFVTIADLQSFTRAAETLGTTQGAISVRLKRLEDRLGQRLLERTPRSVRLSAQ 63 Query: 65 GQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVVEV 124 G FL ARE LAAH+RA+ L RF +GIS HVAG +P LA+++A DPG+ +EV Sbjct: 64 GAVFLAPAREFLAAHDRAMAGLFSTRRRFGLGISAHVAGPEVPTLLARLNAHDPGLTIEV 123 Query: 125 RVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVATF 184 R+ +S L+ ++RGE+DA I+RRE R G+++ E GWFA P + G LR+A Sbjct: 124 RMDNSRTLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWFAAPQFEHRQGEPLRLAAL 183 Query: 185 SQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 S AC +R+++ R LD+A IAW EVF+GG V AAVSAGLA+SA R AP Sbjct: 184 SPACGVRDIAARALDSAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAP 235 >ref|YP_002976028.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS56489.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 283 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 125/232 (53%), Positives = 166/232 (71%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD+DAV+AFV A+L SFTRAAEAL STQ+AIS+KLK+LE+RLG RL+ERTPR VRLSA+ Sbjct: 2 LDVDAVRAFVTIAELQSFTRAAEALGSTQAAISVKLKRLEERLGHRLIERTPRLVRLSAQ 61 Query: 65 GQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVVEV 124 G FL +AR+ + AH+RA+ L F++GI+ HVAG +P LA++ A DPG+ +EV Sbjct: 62 GAVFLQSARDFIGAHDRAVAALSSTSRHFTLGIAAHVAGPEVPTILARLSAHDPGLTIEV 121 Query: 125 RVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVATF 184 R+ +S L+ ++RGELDA I+RRE R G+++ E GWFA P + G LR+A Sbjct: 122 RLDNSRVLLDAFDRGELDAAIIRREEDRRDGEVLGPEHFGWFAAPQFEYRRGEPLRLAAL 181 Query: 185 SQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 S +C + ++ LD AGIAW EVF+GGG L + AAVSAGLAV+A +R AP Sbjct: 182 SPSCGVHNIATHALDGAGIAWNEVFLGGGSLVMTAAVSAGLAVAAFSHRLAP 233 >ref|YP_372588.1| LysR family transcriptional regulator [Burkholderia sp. 383] gb|ABB11944.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 285 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 168/235 (71%), Gaps = 1/235 (0%) Query: 3 KPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLS 62 K LD++AVQAFVL ADL SFTRAAEA+++TQSA+SLK+K+LE LGRRLLERTPRQVRLS Sbjct: 2 KTLDIEAVQAFVLTADLKSFTRAAEAMDTTQSAVSLKIKRLEDGLGRRLLERTPRQVRLS 61 Query: 63 AEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVV 122 A+G FL AREL+AAH+ A+ G R +G+S HV GA LP L ++ +PG+V+ Sbjct: 62 ADGTAFLEPARELVAAHQGAIGAFGAGQRRLVIGVSHHVVGADLPMLLRRMSEAEPGLVL 121 Query: 123 EVRVASSHDLMPLYERGELDAVIVRREPQDR-GGKLVMEERIGWFAHPDAQCWAGGALRV 181 E+RVA+S D++ ++RG+LDA + + R G+ ++ E GW A D + LR+ Sbjct: 122 EIRVAASRDVLDAFDRGQLDAAVALQHDSRRLDGETLLSESFGWMAATDFEYHPPQPLRL 181 Query: 182 ATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 AT ++ C +R +++ LD G+AW EVFVGGG+ +GAAVSAGLAV+AL +R AP Sbjct: 182 ATQAEPCSVRRMAIGALDEGGVAWTEVFVGGGVATIGAAVSAGLAVAALGHRVAP 236 >ref|YP_624034.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_837821.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] ref|YP_001776969.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ABF79061.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gb|ABK10928.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gb|ACA92479.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 285 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/248 (51%), Positives = 170/248 (68%), Gaps = 1/248 (0%) Query: 3 KPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLS 62 K LD++AVQAFVL ADL SFTRAAEAL++TQSA+SLK+K+LE LGRRLLERTPRQVRLS Sbjct: 2 KTLDIEAVQAFVLTADLKSFTRAAEALDTTQSAVSLKIKRLEDGLGRRLLERTPRQVRLS 61 Query: 63 AEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVV 122 A+G FL AREL+AAH AL R +G+S HV GA LP L ++ +P +V+ Sbjct: 62 ADGTAFLEPARELVAAHHGALGAFGTSQRRLVIGVSHHVVGADLPMLLRRMSEAEPALVL 121 Query: 123 EVRVASSHDLMPLYERGELDAVIVRREPQDR-GGKLVMEERIGWFAHPDAQCWAGGALRV 181 E+RVA+S D++ ++RG LDA + + R G+ ++ E GW A D + LR+ Sbjct: 122 EIRVAASRDVLDAFDRGRLDAAVALQHDSRRLDGETILSESFGWMAAADFEYHPPQPLRL 181 Query: 182 ATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAPGXKNL 241 AT ++ C +R +++ LD AG+AW EVFVGGG+ +GAAVSAGLAV+AL +R AP Sbjct: 182 ATQAEPCSVRRMAVDALDEAGVAWTEVFVGGGVATIGAAVSAGLAVAALGHRVAPAGTVD 241 Query: 242 LKTQKRIP 249 + T+ +P Sbjct: 242 VGTRYGLP 249 >ref|NP_356654.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] ref|ZP_08529270.1| LysR family transcriptional regulator [Agrobacterium sp. ATCC 31749] gb|AAK89439.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] gb|EGL63871.1| LysR family transcriptional regulator [Agrobacterium sp. ATCC 31749] Length = 293 Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 127/232 (54%), Positives = 161/232 (69%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD++AV+AFV ADL SFTRAAE L +TQ AIS+KLK+LE RLG+RLLERTPR VRLSA+ Sbjct: 7 LDVEAVEAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRLSAQ 66 Query: 65 GQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVVEV 124 G FL ARE LAAH+RAL L RF +GI+ HVAG +P LA+++ DPG+ +EV Sbjct: 67 GAVFLAPAREFLAAHDRALAGLSSPRRRFGLGIAAHVAGPEVPTLLARLNDHDPGLTIEV 126 Query: 125 RVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVATF 184 R+ S L+ ++RGE+DA I+RRE R G+++ E GW+A P + G LR+A Sbjct: 127 RMDHSRSLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWYATPQFEHRQGEPLRLAAL 186 Query: 185 SQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 S AC +R ++ LDAA IAW EVF+GG V AAVSAGLA+SA R AP Sbjct: 187 SPACGVRNIATHALDAAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAP 238 >ref|ZP_04941900.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gb|EAY65071.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 274 Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%) Query: 3 KPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLS 62 K LD++AVQAFVL ADL SFTRAAEAL++TQSA+SLK+K+LE LGRRLLERTPRQVRLS Sbjct: 18 KTLDIEAVQAFVLTADLKSFTRAAEALDTTQSAVSLKIKRLEDGLGRRLLERTPRQVRLS 77 Query: 63 AEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVV 122 A+G FL AREL+AAH AL R +G+S HV GA LP L ++ +P +V+ Sbjct: 78 ADGTAFLEPARELVAAHHGALGAFGTSQRRLVIGVSHHVVGADLPMLLRRMSEAEPALVL 137 Query: 123 EVRVASSHDLMPLYERGELDAVIVRREPQDR-GGKLVMEERIGWFAHPDAQCWAGGALRV 181 E+RVA+S D++ ++RG LDA + + R G+ ++ E GW A D + LR+ Sbjct: 138 EIRVAASRDVLDAFDRGRLDAAVALQHDSRRLDGETILSESFGWMAAADFEYHPPQPLRL 197 Query: 182 ATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 AT ++ C +R +++ LD AG+AW+EVFVGGG+ +GAAVSAGLAV+AL +R AP Sbjct: 198 ATQAEPCSVRRMAVDALDEAGVAWMEVFVGGGVATIGAAVSAGLAVAALGHRVAP 252