BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0075.p         (201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777113.1| two component response regulator protein [He...   415   e-114
ref|ZP_08273368.1| response regulator receiver protein [Oxalobac...   259   2e-67
ref|YP_004752641.1| excisionase/Xis, DNA-binding protein [Collim...   223   2e-56
ref|ZP_08272588.1| response regulator receiver domain protein (C...   191   4e-47
ref|YP_002889687.1| response regulator receiver protein [Thauera...   152   3e-35
ref|YP_550986.1| response regulator receiver domain-containing p...   146   2e-33
ref|YP_283789.1| excisionase/Xis, DNA-binding [Dechloromonas aro...   146   2e-33
ref|YP_980694.1| response regulator receiver protein [Polaromona...   146   2e-33
ref|YP_003846561.1| response regulator receiver protein [Gallion...   129   3e-28
emb|CBA33902.1| hypothetical protein Csp_B21360 [Curvibacter put...   120   1e-25

>ref|YP_003777113.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65205.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 211

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   VCTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEH 60
           VCTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEH
Sbjct: 11  VCTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEH 70

Query: 61  GRSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKP 120
           GRSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKP
Sbjct: 71  GRSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKP 130

Query: 121 DVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKPI 180
           DVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKPI
Sbjct: 131 DVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKPI 190

Query: 181 NFDELRGYMRACCARREREAR 201
           NFDELRGYMRACCARREREAR
Sbjct: 191 NFDELRGYMRACCARREREAR 211


>ref|ZP_08273368.1| response regulator receiver protein [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33154.1| response regulator receiver protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 208

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/199 (63%), Positives = 156/199 (78%), Gaps = 8/199 (4%)

Query: 1   VCTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEH 60
           +CTTQ AA ILGISV+SVQQLVEAG+IEAWKTKGGHRRIPL A+ AYKA   +     EH
Sbjct: 11  ICTTQNAARILGISVTSVQQLVEAGVIEAWKTKGGHRRIPLAAIQAYKAAQTTVS---EH 67

Query: 61  GRSHVAQRAGNGRT-AVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSK 119
           G +H    A  GR  A+LVIEDN +QRE+Y K + SW L   L +CENGY+AL+EIAR+K
Sbjct: 68  GGAH----AVPGRKPAILVIEDNLMQREIYQKQILSWNLDATLTFCENGYQALIEIARNK 123

Query: 120 PDVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKP 179
           P+V+LADI+M+G+DGYEVV TIL  P L D+ IAI SSL  +E+ +RGGIP GVV+F KP
Sbjct: 124 PNVLLADIMMDGIDGYEVVTTILGYPDLSDIHIAILSSLTAEELDERGGIPNGVVYFGKP 183

Query: 180 INFDELRGYMRACCARRER 198
           +N+DELRGY+RACCA++ R
Sbjct: 184 VNYDELRGYLRACCAQQHR 202


>ref|YP_004752641.1| excisionase/Xis, DNA-binding protein [Collimonas fungivorans
           Ter331]
 gb|AEK61818.1| Excisionase/Xis, DNA-binding protein [Collimonas fungivorans
           Ter331]
          Length = 208

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 146/200 (73%), Gaps = 7/200 (3%)

Query: 2   CTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEHG 61
            TTQEAA +LGISV+SVQQLVE G++ AWKT+GGHRRIP  A+ A KA         + G
Sbjct: 11  VTTQEAAKLLGISVTSVQQLVERGVLVAWKTQGGHRRIPREAIDALKAERSDL--LTDRG 68

Query: 62  RSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKPD 121
           RS     A +   + L++EDN LQR +Y K +ASW + L+  +CENGY+AL+EIA+ K D
Sbjct: 69  RS-----APSSTLSALIVEDNALQRMVYEKQIASWDIALETRFCENGYQALVEIAQRKYD 123

Query: 122 VVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKPIN 181
           ++L DIVMEG+DGYE+VKT+L +P LR + IA+ ++L ++++  RGG+P  V+FF KPI 
Sbjct: 124 ILLLDIVMEGIDGYEIVKTVLANPDLRHIDIAVLTTLSREDLDARGGLPDEVLFFQKPIV 183

Query: 182 FDELRGYMRACCARREREAR 201
           F+ELRG+MR C AR+ R+AR
Sbjct: 184 FEELRGFMRGCAARKARQAR 203


>ref|ZP_08272588.1| response regulator receiver domain protein (CheY-like)
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33941.1| response regulator receiver domain protein (CheY-like)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 186

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 124/187 (66%), Gaps = 6/187 (3%)

Query: 15  VSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEHGRSHVAQRAGNGRT 74
           ++SVQQLVE G + AWKT GGHRRIPL AVHAYK +  + GD  +   +  A      +T
Sbjct: 1   MTSVQQLVETGALTAWKTTGGHRRIPLNAVHAYKLSRATTGDTTDELPAQAA------KT 54

Query: 75  AVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKPDVVLADIVMEGMDG 134
           ++L+I+D Q +R+ Y   +ASW L   + +C NGY+AL+EI RSKPD++LAD+ M+   G
Sbjct: 55  SILIIQDGQQKRDFYEDQIASWNLNASMAFCSNGYQALMEITRSKPDILLADMAMDTAAG 114

Query: 135 YEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKPINFDELRGYMRACCA 194
            E++ TIL  P L D+ +A+ S+ +++  A    +  GVVFF  P+N DELRGY+R CCA
Sbjct: 115 QELINTILTYPDLSDMHMAVVSNHEQEPPAMWADLSDGVVFFSNPVNLDELRGYLRGCCA 174

Query: 195 RREREAR 201
            +ER  R
Sbjct: 175 GQERVRR 181


>ref|YP_002889687.1| response regulator receiver protein [Thauera sp. MZ1T]
 gb|ACR01310.1| response regulator receiver protein [Thauera sp. MZ1T]
          Length = 204

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 122/198 (61%), Gaps = 11/198 (5%)

Query: 2   CTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEHG 61
            +T +AA  LG+S+ +VQQ+VE+G +  WKT GGHRRI   +V A  A          H 
Sbjct: 12  ISTAQAARQLGLSLGAVQQMVESGTLAGWKTAGGHRRIRQDSVDALLA----------HA 61

Query: 62  RSHVA-QRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKP 120
           RS  A  R+   R  V+V+ED++L + +Y +   +W LPLD+   E+G  AL+E+ R  P
Sbjct: 62  RSPSAPMRSNRERLRVMVVEDDRLLQNIYRETFLTWSLPLDVHLMEHGLDALVEVGREPP 121

Query: 121 DVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKPI 180
           D+++AD+ + G+DG+E+++ + ++P   D++I + S+L   E+A  GG+P  +  + KPI
Sbjct: 122 DLLIADLRIPGIDGFEMIRRLRDNPLSSDIAIVVVSALGPKEIAAAGGLPEDITVYRKPI 181

Query: 181 NFDELRGYMRACCARRER 198
            F EL GY++A  + R R
Sbjct: 182 PFHELHGYVQAMISMRRR 199


>ref|YP_550986.1| response regulator receiver domain-containing protein [Polaromonas
           sp. JS666]
 gb|ABE46088.1| response regulator receiver domain protein (CheY-like) [Polaromonas
           sp. JS666]
          Length = 215

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 113/195 (57%), Gaps = 11/195 (5%)

Query: 2   CTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAY--KATPGSAGDAGE 59
           C T  AA +LG+SV++VQ LVE G I+AWKT GGHRRI L +++AY  K  P  A     
Sbjct: 23  CGTSYAAKLLGLSVATVQSLVEKGEIDAWKTLGGHRRIALQSINAYLAKNNPQVA----- 77

Query: 60  HGRSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSK 119
                V       R  VL++ED++  RELY      W LP+D  +  +  +AL++IA  +
Sbjct: 78  ----KVVDTDPKHRLRVLLVEDDEATRELYQLQFEDWDLPVDCTWMPSALEALMDIASMR 133

Query: 120 PDVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKP 179
           PD+++ D+ M G+DG E++K +  + QL D+ I + S L  + + +RGG+P       KP
Sbjct: 134 PDLLITDLSMPGVDGIEMLKALKRNQQLADMQIIVISGLPPEAIEERGGLPPDAHRLQKP 193

Query: 180 INFDELRGYMRACCA 194
           +NFD L GY+ A   
Sbjct: 194 VNFDWLHGYVTALVT 208


>ref|YP_283789.1| excisionase/Xis, DNA-binding [Dechloromonas aromatica RCB]
 gb|AAZ45319.1| Excisionase/Xis, DNA-binding protein [Dechloromonas aromatica RCB]
          Length = 195

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 119/197 (60%), Gaps = 10/197 (5%)

Query: 2   CTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEHG 61
            +T++AA  LG+S+ +VQ +VE G +EAWKT GGHRRIP+ +V A  A   +   + + G
Sbjct: 7   LSTRQAALRLGVSLGTVQNMVENGALEAWKTAGGHRRIPVASVDALLARRRNLTPSAQEG 66

Query: 62  RSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKPD 121
                     G+  +LV ED+   + LY     SWGLP+ L    NG+  LL++ +  PD
Sbjct: 67  ---------GGQLDILVAEDDHTLQMLYQMTFDSWGLPIKLRIVANGFDGLLQVGQRVPD 117

Query: 122 VVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKPIN 181
           +++AD++M GMDG+E+++ +  +  L  + I + S++D +E+ +R G+P  +  F KPI 
Sbjct: 118 ILIADLMMPGMDGFEMIRRLRANADLARMDIIVVSAIDSEEIKKR-GLPNDITIFGKPIP 176

Query: 182 FDELRGYMRACCARRER 198
           F E++G++    A R+R
Sbjct: 177 FHEIKGFLLGRIAARQR 193


>ref|YP_980694.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gb|ABM35773.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 213

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 116/192 (60%), Gaps = 12/192 (6%)

Query: 2   CTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAY--KATPGSAGDAGE 59
           C T  AA +LG+SV++VQ LVE G IEAWKT GGHRRI L +++AY  K +P     A  
Sbjct: 23  CGTSYAAKVLGLSVATVQSLVEKGEIEAWKTLGGHRRISLHSLNAYLTKYSP-QLSRADL 81

Query: 60  HGRSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSK 119
           H +          R  VLV+ED++  R+LY      W LP+D  +  +   AL++IA  +
Sbjct: 82  HPKH---------RLRVLVVEDDEAARDLYRCHFEEWDLPVDCTWMSSALDALMDIASMR 132

Query: 120 PDVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKP 179
           PD+++AD+ M G+DG E+++TI  +  L D+ I + S +  + +A RGG+P       KP
Sbjct: 133 PDLLIADLSMPGVDGIEMLRTIKRNQHLADMQIVVISGMAVEAIAARGGLPPQARLVQKP 192

Query: 180 INFDELRGYMRA 191
           +NFD L+GY+ A
Sbjct: 193 VNFDWLQGYVTA 204


>ref|YP_003846561.1| response regulator receiver protein [Gallionella capsiferriformans
           ES-2]
 gb|ADL54797.1| response regulator receiver protein [Gallionella capsiferriformans
           ES-2]
          Length = 206

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 101/188 (53%), Gaps = 16/188 (8%)

Query: 2   CTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEHG 61
           CTT+EAA +L +S+ + Q   E+G++EAWKT GGHRRI   ++    A P          
Sbjct: 12  CTTREAAELLSVSLRTAQLWSESGLLEAWKTDGGHRRISRLSIERLLAEPI--------- 62

Query: 62  RSHVAQRAGNGRTA----VLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIAR 117
              V Q     +T     +LV+ED+   R LY   +  W + +      +GY+AL+ I  
Sbjct: 63  ---VRQLDNKAKTPEALKILVVEDDPALRRLYEINMQRWPMSVRFHSANDGYEALIRIGH 119

Query: 118 SKPDVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFP 177
            KPD+++ D+ M GMDG+ ++ T+ N  +L D+ I   S LD D ++  GGIP G+    
Sbjct: 120 DKPDLLITDLQMPGMDGFRMLNTLCNISELADMQIVAVSGLDPDAISAHGGIPDGISLLS 179

Query: 178 KPINFDEL 185
           KP+ F  L
Sbjct: 180 KPVPFSHL 187


>emb|CBA33902.1| hypothetical protein Csp_B21360 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 203

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 108/191 (56%), Gaps = 5/191 (2%)

Query: 1   VCTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKATPGSAGDAGEH 60
           + TT+E   +LG++V +VQ  VE+G++ AW+T GGHRRI  +AV               H
Sbjct: 10  LMTTREVGEVLGVAVRTVQLWVESGVLPAWRTAGGHRRIARSAVDRLTRERADMLAPVVH 69

Query: 61  GRSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENGYKALLEIARSKP 120
           G +    RA      +LV+ED+   R+L++  +  W  P++L    +G++ L+ I +  P
Sbjct: 70  GATAPPTRA----LRLLVVEDDADLRQLFSMMVEGWRFPVELSTANDGFQGLVRIGQWMP 125

Query: 121 DVVLADIVMEGMDGYEVVKTI-LNDPQLRDVSIAIASSLDKDEMAQRGGIPAGVVFFPKP 179
           D+V+ D+ M GM+G+E+V+++ +      ++ +   ++L   ++A RGG+P G V F KP
Sbjct: 126 DMVVTDLNMPGMNGFEMVRSLKMAGADYANLQVVAVTALSAGDVADRGGLPEGTVVFQKP 185

Query: 180 INFDELRGYMR 190
           ++F  +    R
Sbjct: 186 VDFSAIEDLAR 196