BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0074.p         (556 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777114.1| two component sensor histidine kinase [Herba...  1125   0.0  
gb|EGW60352.1| integral membrane sensor signal transduction hist...   431   e-118
ref|YP_004752637.1| periplasmic sensor hybrid histidine kinase [...   385   e-105
ref|YP_781211.1| periplasmic sensor hybrid histidine kinase [Rho...   350   4e-94
ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ...   345   2e-92
ref|YP_001239507.1| sensor histidine kinase [Bradyrhizobium sp. ...   320   3e-85
ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6]...   282   1e-73
ref|ZP_08402714.1| histidine kinase [Rubrivivax benzoatilyticus ...   271   3e-70
ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine ...   270   5e-70
ref|YP_004234669.1| integral membrane sensor signal transduction...   264   3e-68

>ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65206.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 556

 Score = 1125 bits (2909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/556 (99%), Positives = 554/556 (99%)

Query: 1   MDDRKQQSLPLRFARIDLRVALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDAQSLS 60
           MDDRKQQS PLRFARIDLRVALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDAQSLS
Sbjct: 1   MDDRKQQSFPLRFARIDLRVALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDAQSLS 60

Query: 61  RLFLEHAYRTIEAADQAALYLRYRYAERGNALNLATEIDNGLVARNVYNLFSIVDAQGDV 120
           RLFLEHAYRTIEAADQAALYLRYRYAERGNALNLATEIDNGLVARNVYNLFSIVDAQGDV
Sbjct: 61  RLFLEHAYRTIEAADQAALYLRYRYAERGNALNLATEIDNGLVARNVYNLFSIVDAQGDV 120

Query: 121 VLSSKPFTPVNLADREHVQVHMQGGQDQLFISKPVLGRVSKKWSLQITRRINRPDGGFGG 180
           VLSSKPFTPVNLADREHVQVHMQGGQDQLFISKPVLGRVSKKWSLQITRRINRPDGGFGG
Sbjct: 121 VLSSKPFTPVNLADREHVQVHMQGGQDQLFISKPVLGRVSKKWSLQITRRINRPDGGFGG 180

Query: 181 VVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQVAGGKVYAAML 240
           VVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQVAGGKVYAAML
Sbjct: 181 VVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQVAGGKVYAAML 240

Query: 241 AQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLEERLAPYYRERERTLMLAALLS 300
           AQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDL+ERLAPYYRERERTLMLAALLS
Sbjct: 241 AQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLKERLAPYYRERERTLMLAALLS 300

Query: 301 VAVLVFNAVLLWLAGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREEL 360
           VAVLVFNAVLLWLAGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREEL
Sbjct: 301 VAVLVFNAVLLWLAGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREEL 360

Query: 361 GESPLAQYAVAIHDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQ 420
           GESPLAQYAVAIHDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQ
Sbjct: 361 GESPLAQYAVAIHDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQ 420

Query: 421 AQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGAQQLT 480
           AQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSG QQLT
Sbjct: 421 AQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGPQQLT 480

Query: 481 MRIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQ 540
           MRIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQ
Sbjct: 481 MRIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQ 540

Query: 541 HQGSTFSFTLPLQEPK 556
           HQGSTFSFTLPLQEPK
Sbjct: 541 HQGSTFSFTLPLQEPK 556


>gb|EGW60352.1| integral membrane sensor signal transduction histidine kinase
           [Dechlorosoma suillum PS]
          Length = 558

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/533 (42%), Positives = 339/533 (63%), Gaps = 6/533 (1%)

Query: 25  FSLLLICGLWLGAFKELQNSRNNYLDDARRDAQSLSRLFLEHAYRTIEAADQAALYLRYR 84
           F+L L+   W     ++ N  +  +    +D  +L+R   EH  RT+++ DQA ++L+Y+
Sbjct: 26  FALALLVLNWCAITFKIHNEESLEIASINQDNLNLARALEEHTLRTLKSVDQAVMFLKYQ 85

Query: 85  YAERGNALNLATEIDNGLVARNVYNLFSIVDAQGDVVLSSKPFTPV-NLADREHVQVHMQ 143
           Y      +++A  + +G++  N++N   I+D  G  +LS+ P   V +L+DREH +VH+ 
Sbjct: 86  YERHPEKVDIAAYVRDGMIFSNLFNQLGIIDEHGKYILSNLPNHKVLDLSDREHFRVHIA 145

Query: 144 GGQDQLFISKPVLGRVSKKWSLQITRRINRPDGGFGGVVVVSMDPQYFTRLYHQIDVGHH 203
               QLF+SKPVLGR S KWSLQ+TRRIN+PDG FGGVVVVS+DP YFT+LY  +++G H
Sbjct: 146 RDTGQLFVSKPVLGRASGKWSLQLTRRINKPDGSFGGVVVVSLDPLYFTQLYADVNLGPH 205

Query: 204 GVITLVGADGVARVRRTGDMDAMGEQVAGGKVYAAMLAQGSGTIEAVSKIDGRERLYAFQ 263
            VITL+G DG+ R R++G  + +G+ +A   +  A   + SGT+E  S ID  +R +A++
Sbjct: 206 SVITLLGLDGIVRARKSGKDEQVGQSLANSPILTAASKEASGTLELTSSIDKIDRFFAYR 265

Query: 264 KLRDYPLFAAVGIDLEERLAPYYRERERTLMLAALLSVAVLVFNAVLLWLAGSLVRSRRE 323
            L DYPL   VG D  E LA         L    L+++ VL F+  +  L   L +SR +
Sbjct: 266 VLFDYPLMVIVGSDRNEALAETRHRAWSYLAFGGLVTLIVLAFSWGIGLLLARLEQSRAK 325

Query: 324 ALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSGNRLLDLV 383
           A +AN+ KS FL++MSHE RTPLNG++GY++ L+E   +  L +YA  IH SG+ LL+LV
Sbjct: 326 AEEANRLKSEFLASMSHELRTPLNGIIGYAELLQESTDDQDLREYAGTIHSSGSHLLELV 385

Query: 384 NAILEVTELEDRR--VAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVPQILV 441
           N+IL++ ++E  R  +A  L+P  ++ L+ + +  H PQA  KGL L   I  DVP+ L+
Sbjct: 386 NSILDLAKIEAGRFELAPTLEP--LQPLLQRVVQAHQPQADGKGLALNLEIDRDVPRQLL 443

Query: 442 CDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGAQQLTMRIKDTGIGIAASQQNDIFEK 501
           CD  ++ +VL+NL+ N V++TD G V V V R G +++   ++D+G GIA + Q  IF+K
Sbjct: 444 CDHLRLTQVLNNLVHNGVKFTDRGTVDVSVRRDG-KRIRFAVRDSGPGIAPADQETIFDK 502

Query: 502 FTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLPLQE 554
           F Q +    R Q G+GLGL ++++LV LMGG+L LQSE  +GS F FTLP+ E
Sbjct: 503 FRQGESFATRRQGGSGLGLALSRQLVELMGGRLTLQSEPGRGSEFYFTLPIGE 555


>ref|YP_004752637.1| periplasmic sensor hybrid histidine kinase [Collimonas fungivorans
           Ter331]
 gb|AEK61814.1| periplasmic sensor hybrid histidine kinase [Collimonas fungivorans
           Ter331]
          Length = 567

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/539 (40%), Positives = 316/539 (58%), Gaps = 2/539 (0%)

Query: 15  RIDLRVALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDAQSLSRLFLEHAYRTIEAA 74
           R D+R+A+  F+  LI  +W+    +  +     L+   RDAQ+++R F E+    IE A
Sbjct: 30  RSDIRLAILFFASALIACIWVVTLYDEASETQRELEKVGRDAQNVARAFDENISHVIEQA 89

Query: 75  DQAALYLRYRYAERGNALNLATEIDNGLVARNVYNLFSIVDAQGDVVLSSKPFTPVNLAD 134
           D+A+  L+Y+Y   G  +N     D  L+  N+ N F I+D  G  V ++      +   
Sbjct: 90  DEASDLLKYQYERFGAKMNNPEYRDAWLMQGNLANRFFILDEHGKQVYANDDIVLNDELI 149

Query: 135 REHVQVHMQGGQDQL-FISKPVLGRVSKKWSLQITRRINRPDGGFGGVVVVSMDPQYFTR 193
             H+Q+H      QL F+ KPV  RVS  WS+Q +RR+NRPDG F GVV VS+  +  TR
Sbjct: 150 AGHMQLHRGHDSGQLLFLVKPVRDRVSGDWSMQASRRLNRPDGSFSGVVGVSISNEAVTR 209

Query: 194 LYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQVAGGKVYAAMLAQGSGTIEAVSKI 253
            YHQI+VG  G I++VG +G  + R      A+G   +G   +A M     G + +   +
Sbjct: 210 FYHQINVGQGGAISVVGDEGTIKAREPDGAKAIGMDFSGRPSFAVMKQHKQGYLTSNGVV 269

Query: 254 DGRERLYAFQKLRDYPLFAAVGIDLEERLAPYYRERERTLMLAALLSVAVLVFNAVLLWL 313
           DG+ R YA++ L +YPL   VGI +EE + P+Y  R R  +LAA  +  V+VF   +L++
Sbjct: 270 DGKRRTYAYRHLENYPLMVLVGISVEEAMQPFYNNRFRGYVLAAFSTGVVVVFTVFILFM 329

Query: 314 AGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIH 373
           A  LV + R A  ANQAKS+FL+NMSHE RTPLNG+LGY++ LRE+L  +    +A AIH
Sbjct: 330 ANGLVSTGRVATLANQAKSQFLANMSHELRTPLNGILGYAELLREDLVGTDEQHFAQAIH 389

Query: 374 DSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIG 433
           DSG  LL LVN +L++  +   ++ V +   N+RE++ + +A H   A  KG+ L   + 
Sbjct: 390 DSGTHLLLLVNTVLDLERIAAGKMEVFIATENLREVMQKIVASHASTAMRKGIALRLVLS 449

Query: 434 EDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGAQQLTMRIKDTGIGIAAS 493
             +P    CD  K+ RVL+NLI NA++YTD G V V V + G   L  R+ DTG GI A 
Sbjct: 450 PALPVEFACDRGKLIRVLNNLIHNALKYTDQGAVTVRVLQ-GDGVLIFRVVDTGEGIPAE 508

Query: 494 QQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLPL 552
            Q  IFEKF Q D S  R+Q G+GLGL +A+ LV  MGG + ++S   +GS F+FTLP+
Sbjct: 509 LQRIIFEKFAQVDGSDMRAQAGSGLGLALAKELVKFMGGTIAVRSRVGKGSIFAFTLPI 567


>ref|YP_781211.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gb|ABJ06231.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 729

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 198/536 (36%), Positives = 308/536 (57%), Gaps = 11/536 (2%)

Query: 29  LICGLWLGAFKELQNSRNNYLDDARRDAQSLSRLFLEHAYRTIEAADQAALYLRYRYAER 88
           +I  +W G    +   +      A ++  +L+R F E   R+I+AADQ  LY+R  YA  
Sbjct: 38  VIAIVWAGILSNISVDQTRTERAALQNNANLARAFEEQIVRSIKAADQTLLYVRDSYARA 97

Query: 89  GNALNLATEIDNGLVARNVYNLFSIVDAQGDVVLSSKPFTP----VNLADREHVQVHMQG 144
             + +++    N     +    F +V    D ++ S    P    ++L DREH +VH  G
Sbjct: 98  PASFDMSLWSKNSQFLTDFS--FQVVVIGKDGIMLSSNIDPTMKGLDLRDREHFRVHADG 155

Query: 145 GQDQLFISKPVLGRVSKKWSLQITRRINRPDGGFGGVVVVSMDPQYFTRLYHQIDVGHHG 204
            +D LFISKP+ GRVSKKWS+Q+TRRI  PDG FGGVVVVS+DP Y +R Y  +++G +G
Sbjct: 156 DKDFLFISKPIFGRVSKKWSVQLTRRIVMPDGSFGGVVVVSLDPNYLSRFYDSVEIGKNG 215

Query: 205 VITLVGADGVARVRRTGDMDAMGEQVAGGKVYAAMLAQGSGTIEAVSKIDGRERLYAFQK 264
            +T+VG DG+ R R      A+G  +A G++ +    + +G+  A S +DG  R+++++K
Sbjct: 216 SVTVVGFDGIIRARGASGPAAVGASLATGRLMSEFAQRPAGSFTAASAVDGVVRIFSYRK 275

Query: 265 LRDYPLFAAVGIDLEERLAPYYRERERTLMLAALLSVAVLVFNAVLLWLAGSLVRSRREA 324
           + DYPL  +VG   +E  APY  +R++ +M+AALL++ ++V +A+++     L +SR  A
Sbjct: 276 VGDYPLVVSVGQASDEVFAPYRSDRDKDIMVAALLTLVIIVVSALIIRYQTGLAKSRDAA 335

Query: 325 LQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSGNRLLDLVN 384
               +A+S FL+ MSHE RTP+NGV+G +D L          + A  + +S + LL L+N
Sbjct: 336 EMGTRARSEFLAMMSHEIRTPMNGVIGLADLLVAADLPGEQNKIAATLRESADYLLQLLN 395

Query: 385 AILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVPQILVCDE 444
            +L+ ++L+  R+ +      +   V   I    P+AQ KGL L  RIG +VP  +  D 
Sbjct: 396 DVLDFSKLDANRLEIERIDFGLHRSVHATIDLLAPRAQEKGLSLTARIGPNVPDSITGDP 455

Query: 445 RKIQRVLDNLISNAVRYTDHGR----VMVEVERSGAQQLTMRIKDTGIGIAASQQNDIFE 500
            +I++VL NL+ NA+++T  G     V  E     A +L  ++ DTG+GI A     +F 
Sbjct: 456 ARIRQVLFNLVGNAIKFTQAGSVEVVVEAEAAVGNAVRLVFKVIDTGVGIPAESLGLLFR 515

Query: 501 KFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLPLQEPK 556
           +F+Q D S  R   G GLGL I +RLV  MGG++ +QS   +GS F F++ L EP+
Sbjct: 516 EFSQGDSSISRRFGGTGLGLAICKRLVACMGGEISVQSRVGKGSVFRFSV-LVEPQ 570


>ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278]
 emb|CAL78419.1| putative sensor histidine kinase with a response regulator receiver
           domain [Bradyrhizobium sp. ORS 278]
          Length = 731

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 205/565 (36%), Positives = 312/565 (55%), Gaps = 21/565 (3%)

Query: 7   QSLPLRFARIDLRV----------ALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDA 56
           +S+P  F R+D  V            ++  L  I  +W G F  +    +     A ++ 
Sbjct: 7   KSMPF-FGRLDRAVDTMVRLIGHFGSAVIGLSAIALVWAGIFYTITEEHSRTEQSALKNG 65

Query: 57  QSLSRLFLEHAYRTIEAADQAALYLRYRYAERGNALNLATEIDNGLVARNVYNLFSIVDA 116
            +L+R F E   R+I AADQ  LY+R  YA+     +++    N     +    F +V  
Sbjct: 66  ANLARAFEEQIIRSIRAADQTLLYVRDSYAKDPQNFDMSLWSKNSQFLSDFS--FQVVVI 123

Query: 117 QGDVVLSSKPFTP----VNLADREHVQVHMQGGQDQLFISKPVLGRVSKKWSLQITRRIN 172
             D ++ S    P    V+L DREH +VH  G  D LFISKP+ GRVS KWS+Q+TRRI 
Sbjct: 124 GKDGIMLSSNIDPKMRGVDLRDREHFRVHADGKDDFLFISKPIFGRVSNKWSIQLTRRII 183

Query: 173 RPDGGFGGVVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQVAG 232
            PDG FGGVVVVS+DP+Y +  Y+ +D+G +G +TLVG DG+ R R +     +G  +AG
Sbjct: 184 MPDGSFGGVVVVSLDPEYLSSFYNSVDLGKNGNVTLVGLDGIVRARASAGPTGVGSSLAG 243

Query: 233 GKVYAAMLAQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLEERLAPYYRERERT 292
             V AA+  + SG+    S IDG  R+Y+FQ+++D PL   VG   +E  A + R R+R 
Sbjct: 244 SPVMAAIQHRSSGSYTVKSLIDGIPRIYSFQRIKDQPLVVIVGQASDEIFAAFKRNRDRD 303

Query: 293 LMLAALLSVAVLVFNAVLLWLAGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGY 352
           L++  LL+V + +   ++      L  SR  A    +A+S FL+ MSHE RTP+NGV+G 
Sbjct: 304 LLVGGLLTVVIGIITILIARYQAGLAASRDAAEAGTRARSEFLAMMSHEIRTPMNGVIGL 363

Query: 353 SDALREELGESPLAQYAVAIHDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQ 412
           +D L          + A  + +S + LL L+N +L+ ++L+  R+ +     ++   V  
Sbjct: 364 ADLLLSADLAPEQRKIATTLRESADYLLQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTA 423

Query: 413 AIARHYPQAQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEV- 471
                  +A+ KGL L   I  DVP  +V D  ++++VL NL+ NA+++T+ G V V+V 
Sbjct: 424 TAELLVSRAKEKGLQLTTSIAPDVPTYVVGDPARLRQVLFNLVGNALKFTEAGSVHVDVR 483

Query: 472 -ERSGAQQLTM--RIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVM 528
            E      LT+   + DTG+GI A     +F++F+Q D+S  R   G GLGL I +RLV 
Sbjct: 484 AEDLAGPNLTLVFSVADTGVGIPAEAVGRLFKQFSQVDNSISRRFGGTGLGLAICKRLVT 543

Query: 529 LMGGQLVLQSEQHQGSTFSFTLPLQ 553
            MGG + +QS+  +GSTF+F++ +Q
Sbjct: 544 CMGGDIKVQSKVGEGSTFTFSIQVQ 568


>ref|YP_001239507.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gb|ABQ35601.1| putative sensor histidine kinase with a response regulator receiver
           domain [Bradyrhizobium sp. BTAi1]
          Length = 729

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 204/569 (35%), Positives = 310/569 (54%), Gaps = 31/569 (5%)

Query: 7   QSLPLRFARIDLRV----------ALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDA 56
           +S+PL F R+D  V            ++  L  I  +W+G    +   R      A ++ 
Sbjct: 7   KSMPL-FGRLDRAVDALVRLIGHFGSAVIGLSAIALVWVGIVYTITEERARTEQSALKNG 65

Query: 57  QSLSRLFLEHAYRTIEAADQAALYLRYRYAERGNALNLATEIDNGLVARNVYNL----FS 112
            +L+R F E   R+I AADQ  LY+R  YA+           D  L ARN   L    F 
Sbjct: 66  ANLARAFEEQIIRSIRAADQTLLYVRDSYAKD------PQNFDMSLWARNSQFLSDFSFQ 119

Query: 113 IVDAQGDVVLSSKPFTP----VNLADREHVQVHMQGGQDQLFISKPVLGRVSKKWSLQIT 168
           +V    D ++ S    P    ++L DREH +VH  G  D LFISKP+ GRVS KWS+Q+T
Sbjct: 120 VVVIGKDGIMLSSNIDPKMRGLDLHDREHFRVHADGTADFLFISKPIFGRVSNKWSIQLT 179

Query: 169 RRINRPDGGFGGVVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGE 228
           RRI   DG FGGVVVVS+DP+Y +  Y+ +D+G +G +TLVG DG+ R R +    A+G 
Sbjct: 180 RRIILQDGSFGGVVVVSLDPEYLSSFYNSVDIGKNGNVTLVGTDGIVRARASAGPSAVGS 239

Query: 229 QVAGGKVYAAMLAQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLEERLAPYYRE 288
            +AG  + A +  + SG+    S+IDG  R+Y+F++++D PL   VG   +E  +     
Sbjct: 240 SLAGSPIMANIEQKTSGSYITKSQIDGISRIYSFRRVKDQPLVVVVGQATDEVFSAI--R 297

Query: 289 RERTLMLAALLSVAVLVFNAVLLWLAGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNG 348
            +R LM+  LL+V + +   ++      L  SR  A    +A+S FL+ MSHE RTP+NG
Sbjct: 298 VDRGLMVGTLLTVIIGIITILIARYQAGLAASRDAAEAGTRARSEFLAMMSHEIRTPMNG 357

Query: 349 VLGYSDALREELGESPLAQYAVAIHDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRE 408
           V+G +D L          + A  + +S + LL L+N +L+ ++L+  R+ +     ++  
Sbjct: 358 VIGLADLLLSADLAPEQRKIATTLRESADYLLQLLNDVLDFSKLDADRLEIEHIEFDLHR 417

Query: 409 LVGQAIARHYPQAQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVM 468
            V         +A+ KGL L   I  DVP  +V D  ++++VL NL+ NA+++T+ G V 
Sbjct: 418 SVTATAELLVSRAKEKGLQLTTSIAPDVPNYVVGDPARLRQVLFNLVGNALKFTEAGSVN 477

Query: 469 VEV--ERSGAQQLTM--RIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQ 524
           ++V  E      LT+   + DTG+GI A     +F +F+Q D+S  R   G GLGL I +
Sbjct: 478 IDVRAENLAGPNLTLVFSVADTGVGIPAEAVGRLFRQFSQVDNSISRRFGGTGLGLAICK 537

Query: 525 RLVMLMGGQLVLQSEQHQGSTFSFTLPLQ 553
           RLV  MGG + +QS+  +GSTF+F++ +Q
Sbjct: 538 RLVTCMGGDIKVQSKIGEGSTFTFSIEVQ 566


>ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6]
 gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 589

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 208/583 (35%), Positives = 298/583 (51%), Gaps = 45/583 (7%)

Query: 3   DRKQQSLPLRF-ARIDLRVALSLF-----SLLLICGLWLGAFKELQNSRNNYLDDARRDA 56
           D    S P R  +R  LR  L++      S+L++ GL           R +    AR + 
Sbjct: 21  DAPPASRPARLVSRWALRFMLAMLAIAWASVLVVIGL---------EYRESMAAQARHN- 70

Query: 57  QSLSRLFLEHAYRTIEAADQAALYLRYRYAERGNA---LNLATEIDNGLVARNVYNLFSI 113
            +L+R F E   R + A DQA +  R R A R  A    +LA   +   +A  +    S+
Sbjct: 71  TNLARAFEEQTVRVVAAVDQATI--RMRDAVRSGAHTLADLAQFANETGMAPTILVQLSL 128

Query: 114 VDAQGDVVLSSKPFTP-------VNLADREHVQVHMQ----GGQ--DQLFISKPVLGRVS 160
           V   G    S     P       V+L+ REH++VH+      GQ  D LFI KPVLG+VS
Sbjct: 129 VGPDGR--FSGSNLDPDGSKTGHVDLSTREHIRVHLSPDGAAGQHADGLFIGKPVLGKVS 186

Query: 161 KKWSLQITRRINRPDGGFGGVVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRT 220
            +W++Q++RRI+ PDG   GVVV S+DP YF  +Y  +++G  G +TLVG D   R R  
Sbjct: 187 GRWTIQLSRRIDGPDGRVLGVVVASLDPSYFENVYRSVELGRQGGVTLVGTDLAIRARVM 246

Query: 221 GDMD-AMGEQVAGGKVYAAMLAQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLE 279
           GD    MG  +       +   Q SG   + S +DG ERL  + ++ DYPL+  V     
Sbjct: 247 GDSSLGMGANIGAASPLVSGGWQRSGDYVSASTVDGVERLVGYHRIDDYPLYVLVSSATA 306

Query: 280 ERLAPYYRERERTLMLAALLS----VAVLVFNAVLLWLAGS---LVRSRREALQANQAKS 332
           E LA +   R   L+L ALLS     A  +F + +  L  S   L+ S   A  AN AK+
Sbjct: 307 ESLAGWRAMRNTVLLLTALLSAAVIAAAWIFLSNVRRLEASNVALIASEARAQSANHAKT 366

Query: 333 RFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSGNRLLDLVNAILEVTEL 392
            FL+ +SHE RTPL  + G+++ + + + +      A  I  +   L  L+  IL+  ++
Sbjct: 367 EFLAAISHELRTPLTSIRGFAELMEKRIEQPKFKDQAGMIRRAAEHLNALLTQILDFAKI 426

Query: 393 EDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVPQILVCDERKIQRVLD 452
           E   + V   P  IR LV          A  KGL L  +I +DVP+ L+ DE ++++VL+
Sbjct: 427 EAGAMRVGATPVAIRPLVRGTADFFAVSAAEKGLELRVQIADDVPETLLTDELRLKQVLN 486

Query: 453 NLISNAVRYTDHGRVMVEVERSGAQQLTMRIKDTGIGIAASQQNDIFEKFTQADDSPRRS 512
           NL+SNA+++T  G V +EVER  A QL + + DTG GI A Q   IFE+F QAD      
Sbjct: 487 NLLSNAMKFTAGGHVAIEVERD-ATQLRLHVVDTGPGIPAEQHELIFERFRQADSQVAHQ 545

Query: 513 QEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLPLQEP 555
             G GLGL +++ L  LMGG L + S   +G+ F+ TLPL  P
Sbjct: 546 HGGTGLGLALSRSLAELMGGTLGVTSTPGEGARFTLTLPLGAP 588


>ref|ZP_08402714.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
 gb|EGJ11047.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 601

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 276/527 (52%), Gaps = 26/527 (4%)

Query: 54  RDAQSLSRLFLEHAYRTIEAADQAALYLRYRYAERG-NALNLATEIDNGLVARNVYNLFS 112
           R   +L+R F E   R + A DQA +  R  +A  G + L L    +   +   +    S
Sbjct: 63  RQNTNLARAFEEQTVRVLAAVDQATVRARDDFARHGGDGLELPRYANETGLVPGILVQLS 122

Query: 113 IVDAQGDVVLSS-----KPFTPVNLADREHVQVHMQ----------GGQDQLFISKPVLG 157
           +V A G  + S+     +    V+L++REHV+VH+              D L+I KPVLG
Sbjct: 123 LVGADGRFIGSNLDPDGRKTGHVDLSEREHVRVHLAPTTLPPGTGLKSADDLWIGKPVLG 182

Query: 158 RVSKKWSLQITRRINRPDGGFGGVVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARV 217
           +VSK+W++QI+RRI+  DG   GVVV S+DP YF  +Y +  +G  G +TLVG D   R 
Sbjct: 183 KVSKRWTIQISRRISAADGRVIGVVVASLDPGYFEDVYRRAAIGSLGAVTLVGQDLSIRA 242

Query: 218 RRTGDMDA--MGEQVAGGKVYAAMLAQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVG 275
           R  G   A  +GE++  G  ++    Q  GT   VS +DG ER  A++++ DYPL+  V 
Sbjct: 243 RVVGGESANQIGEKLKRGGAFSQQDLQREGTFSGVSTLDGLERYTAYRRIADYPLYVLVA 302

Query: 276 IDLEERLAPYYRERERTLMLAALLSVAV----LVFNAVLLWLAG---SLVRSRREALQAN 328
              +E L  +   R   ++L  LL+ AV    LVF A L  L     +L  S  +A  AN
Sbjct: 303 TASQEALVGWRTTRNIAVVLTLLLTGAVAAGALVFVAGLRRLEAHNAALRASEAQANAAN 362

Query: 329 QAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSGNRLLDLVNAILE 388
            AKS FL+ +SHE RTPL  + G+++ +   L        A  I      L  L+  IL+
Sbjct: 363 NAKSEFLAAISHELRTPLTSIRGFAELMEHRLDNPKFRDQAGLIRKGAEYLNQLLGEILD 422

Query: 389 VTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVPQILVCDERKIQ 448
           + ++E   + +  +P N+  LV   +  +   A  KGL L   I  + PQ++V D  +++
Sbjct: 423 LAKVEAGSMTLSSEPVNLGSLVQGTVDFYALTAAGKGLTLAVEIDPEAPQVIVADGLRVK 482

Query: 449 RVLDNLISNAVRYTDHGRVMVEVERSGAQQLTMRIKDTGIGIAASQQNDIFEKFTQADDS 508
           ++L+NL+SNA+++T  GRV V VER G + L M ++DTG GIA      IFE+F Q    
Sbjct: 483 QILNNLLSNAIKFTPAGRVDVMVERLGDRVL-MHVEDTGPGIAPELHETIFERFRQGSAR 541

Query: 509 PRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLPLQEP 555
                 G GLGL +++ L  LMGG L L SE  +G+ F+  L +  P
Sbjct: 542 VSYEHGGTGLGLALSRALAQLMGGTLTLASEPGRGARFTLALTIVLP 588


>ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
            delafieldii 2AN]
 gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
            delafieldii 2AN]
          Length = 1425

 Score =  270 bits (690), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 285/564 (50%), Gaps = 37/564 (6%)

Query: 20   VALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDAQSLSRLFLEHAYRTIEAADQAAL 79
            V   +FS L++ G W      L       LD   R   + ++   EH  R ++  DQA  
Sbjct: 857  VVACVFSALVLLGAWATMAALLTWQWQETLDAEMRQNTNTAQALKEHTLRVLDTVDQA-- 914

Query: 80   YLRYRYAERGNALN----LATEIDNGLVARNVYNLFSIVDAQGDVVLSSKPFTP------ 129
              R + A R   L+    ++   + G+V + +  L S V A G    S+    P      
Sbjct: 915  MWRVQSAVRDRQLSGQDLVSIANETGMVPQILTQL-SFVGADGRFQGSN--LDPDGSRSQ 971

Query: 130  -VNLADREHVQVHMQGGQ----------DQLFISKPVLGRVSKKWSLQITRRINRPDGGF 178
             VNL DR+H++VH+   Q          + LF+S+ +LG+VS   ++QI+R++   DG  
Sbjct: 972  HVNLMDRDHIRVHLLPSQATPSPTGMLQNSLFVSRSLLGKVSGVRTIQISRKVIAEDGTT 1031

Query: 179  GGVVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQVAGGKVYAA 238
             GVVV S++P +F  +Y  +D G  G + LVG DG+ RVR  G   A  +      +   
Sbjct: 1032 LGVVVASLNPDHFAEVYRGVDFGEDGGVALVGLDGIIRVRVLGGASANVDAQLPDDLLQT 1091

Query: 239  MLAQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLEERLAPYYRERERTLMLAAL 298
            M     G   AVS  DG  R+  F ++ DYPL    G    E  AP+   R   LML  L
Sbjct: 1092 MSKTSRGATAAVSS-DGIRRIIGFSRVGDYPLVVLSGTSETEAFAPWRTTRNTVLMLTVL 1150

Query: 299  LSVAVLVFNAVLLW----LA---GSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLG 351
            LS+AV+ F AV L     LA    +L +S  EA +ANQAKS FL+ MSHE RTPL  + G
Sbjct: 1151 LSLAVVAFVAVFLGSISRLALSHAALTQSEAEAQRANQAKSEFLAAMSHELRTPLTSIRG 1210

Query: 352  YSDALREELGESPLAQYAVAIHDSGNRLLD-LVNAILEVTELEDRRVAVHLDPANIRELV 410
            +++ L E   + PL Q   A+   G   L+ L+  IL++  +E   +  H +P  + +LV
Sbjct: 1211 FAE-LMELRSKDPLIQEQSALIRQGAEHLNALLTEILDLARIEAGAMPAHPEPVVLHDLV 1269

Query: 411  GQAIARHYPQAQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVE 470
             +        A AK L L   + +  PQ LV D  K++++L NL+SNA+++T  GRV + 
Sbjct: 1270 HEVSELFRVSAVAKSLALTAAVSDAAPQTLVTDRLKLKQILSNLLSNAIKFTPAGRVEIF 1329

Query: 471  VERS-GAQQLTMRIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVML 529
            V+      Q+   + DTG GI AS    IFEKF+Q          G GLGL++++ L  L
Sbjct: 1330 VDACPDGSQVHFHVNDTGPGIPASLHGVIFEKFSQGHARISYQHGGTGLGLSLSRALAEL 1389

Query: 530  MGGQLVLQSEQHQGSTFSFTLPLQ 553
            +GG L ++S   +GSTF+ +LPL 
Sbjct: 1390 LGGTLTVRSAVGEGSTFTLSLPLH 1413



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 320 SRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSD--ALREELGESPLAQYAVAIHDSGN 377
           +R  A +A+++KS F++N+SHE RTPL  +LG+S+   LR    E   A ++  IH +G 
Sbjct: 593 ARDLAEEASRSKSEFVANISHELRTPLQSILGFSELGMLRGRQHEKLAAMFS-DIHAAGQ 651

Query: 378 RLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVP 437
           R+L LVN +L++ ++E    A H +  ++R+L+    A        K L L   +G   P
Sbjct: 652 RMLVLVNDLLDIAKIESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGR-AP 710

Query: 438 QILVCDERKIQRVLDNLISNAVRYTDHGRVM-VEVERSGAQQLTMRIKDTGIGIAASQQN 496
            I   D  + Q+V+ N+++NAV+++  G  + +         + +++ D G GI  S+  
Sbjct: 711 LIAKVDPSRFQQVVRNVLANAVKFSPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSELE 770

Query: 497 DIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLP 551
            +FE F Q+  + R    G GLGL I ++++   GG++   +    G+ F   LP
Sbjct: 771 AVFEAFVQSSQT-RDGSGGTGLGLAICRKIITAHGGRINATNVPGGGAMFHIVLP 824


>ref|YP_004234669.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gb|ADX46102.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 595

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 293/574 (51%), Gaps = 50/574 (8%)

Query: 21  ALSLFSLLL-ICGLWLGAFKELQNSRNNYLDDARRDAQSLSRLFLEHAYRTIEAADQAAL 79
           AL + +LLL +   W      LQ    + +   RR   +L+R+  E   R + AADQA L
Sbjct: 29  ALVIGTLLLALTATWALVAISLQTKWQDAVQSQRRQNANLARVLEEQTLRVLAAADQATL 88

Query: 80  ----------YLRYRYAERGNALNLATEIDNGLVARNVYNLFSIVDAQGDVVLSSKPFT- 128
                     + +  YA   N   LA +I   L         SIV   G  V S+   T 
Sbjct: 89  RVAAEVRSGEFTKEDYALFANETGLAPDILTQL---------SIVGPDGRFVGSNLDPTG 139

Query: 129 ----PVNLADREHVQVHMQGGQ----------DQLFISKPVLGRVSKKWSLQITRRINRP 174
                 +L++REH++VH++  +            LFI KPV GR+S + ++Q++R I   
Sbjct: 140 ARNQDTDLSEREHIRVHLEPSKVPHARTQMSASGLFIGKPVTGRISGRRTMQLSRPIIGR 199

Query: 175 DGGFGGVVVVSMDPQYFTRLYHQIDVGHHGVITLVGAD--GVARVRRT--GDMDAMGEQV 230
           +G   GVVV S++P YF ++Y  +D+G  G + L+GAD   + RV  T  G++D + E  
Sbjct: 200 NGYLHGVVVASLNPSYFEKVYGGVDIGAQGAVVLMGADFGMLTRVIGTQAGNIDQVIEFP 259

Query: 231 AGGKVYAAMLAQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLEERLAPYYRERE 290
               +  A   +  GT + VS +DG  R+ AF +L  YPL   V    +E LA +   R 
Sbjct: 260 PDHPL--ADTTRRHGTYQRVSHVDGLGRITAFHRLPGYPLTVLVSTADDEALAEWKTMRN 317

Query: 291 RTLMLAALLSVAVLVFNAVLL-------WLAGSLVRSRREALQANQAKSRFLSNMSHEFR 343
            T++ A L S A++   A  L           +L  S  +A  AN+AKS FL+ +SHE R
Sbjct: 318 FTMVFAGLFSAALVALCAGFLRGLRQLEQKNVALAASEAQARSANRAKSEFLTAISHELR 377

Query: 344 TPLNGVLGYSDALREELGESPLAQYAVAIHDSGNRLLDLVNAILEVTELEDRRVAVHLDP 403
           TPL  + G+++ + + L +    + A  I  +   L  L++ IL++ +++   + +    
Sbjct: 378 TPLTSIHGFAELMEQRLEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGD 437

Query: 404 ANIRELVGQAIARHYPQAQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTD 463
             +RELVG  +      A  KGL LE RI  DVP +L CD  +++++L+NL+SNA+++T 
Sbjct: 438 HAVRELVGTTVDLFAISAAQKGLTLEKRIAPDVPHMLRCDGLRLKQILNNLLSNALKFTR 497

Query: 464 HGRVMVEVERSGAQQLTMRIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIA 523
            G V +EV+ + A+ L  R+ DTG GI A     IFEKF+Q          G GLGL ++
Sbjct: 498 EGGVRLEVDTAEARNLRFRVIDTGPGIPADLHEVIFEKFSQGGAEVSTQHGGTGLGLALS 557

Query: 524 QRLVMLMGGQLVLQSEQHQGSTFSFTLPL--QEP 555
           + L  LMGG+L + SE   G+ F+  LP+  QEP
Sbjct: 558 RGLAELMGGRLTVASETGHGACFTLELPMPAQEP 591