BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0073.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775243.1| histidine-containing phosphotransfer (HPt) d...    75   2e-12

>ref|YP_003775243.1| histidine-containing phosphotransfer (HPt) domain-containing
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63335.1| histidine-containing phosphotransfer (HPt) domain protein
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 6   DPHQYRHIDPSALLQAVGGDARTVASLARTFADSAPEIFARLAQAVGEGNAEAARHESHA 65
           + H Y+HI+P  LL+A+GGDA     +  TFA SAP  FARL  A+   +A   + E+H+
Sbjct: 2   NDHHYQHINPEPLLEAMGGDATACRHMFGTFAKSAPANFARLEAAILADDAAQVKREAHS 61

Query: 66  LKGMSALFNARALAEQLQQTEAAARAG-SLPAPEQWTQLQASFEQALEEIRRYAQSAGPA 124
           LK M+AL  A  L E L+  E  +RA  +  A  +  +LQ+ F     E++ Y    G A
Sbjct: 62  LKSMTALVGAGVLTELLKSIEVQSRAEPAQSAQPRLAELQSLFAATAAEVQHYVDQVGVA 121