BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0062.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspiril... 487 e-136 ref|YP_001098830.1| putative signaling protein [Herminiimonas ar... 302 3e-80 ref|YP_584410.1| putative signaling protein [Cupriavidus metalli... 253 3e-65 ref|YP_003521591.1| PleD [Pantoea ananatis LMG 20103] >gi|291153... 238 8e-61 ref|ZP_03828815.1| putative signaling protein [Pectobacterium ca... 234 1e-59 ref|YP_004117171.1| diguanylate cyclase [Pantoea sp. At-9b] >gi|... 233 2e-59 ref|YP_003016567.1| diguanylate cyclase [Pectobacterium carotovo... 232 4e-59 ref|YP_049193.1| putative signaling protein [Pectobacterium atro... 230 1e-58 ref|ZP_03831249.1| putative signaling protein [Pectobacterium ca... 229 2e-58 ref|YP_003260675.1| diguanylate cyclase [Pectobacterium wasabiae... 228 5e-58 >ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65216.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE Sbjct: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR Sbjct: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ Sbjct: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVESEETVTG 240 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVESEETVTG Sbjct: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVESEETVTG 240 >ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans] emb|CAL60703.1| conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 258 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 140/238 (58%), Positives = 182/238 (76%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 M+ DLFE E AL A DV++ YR AL L + + +LMR++RRLI+RSDR E Sbjct: 1 MNDNDLFEAETAALNSAYDVISKDDASGDEYRIALDNLAKDFHRLMRETRRLIARSDRKE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 ELN LN +L+QL+ ELDYKARHDNLTG LNRGAVF++A L+ +P+SL+VLDIDFFKR Sbjct: 61 LELNTLNFKLEQLTSELDYKARHDNLTGVLNRGAVFDQAEHYLKSNPLSLIVLDIDFFKR 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 INDEFGHPTGDAV+RELV +L+++++GVG IGRVGGEEFT+LLP ++L+ A+ +A +R Sbjct: 121 INDEFGHPTGDAVLRELVKKLKSSLNGVGEIGRVGGEEFTVLLPNISLDDAIEIAENVRL 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVESEETV 238 AIA E F C P VT+SFG++W+ DFE AY RAD ALY+AK +GRNRVE++ ++ Sbjct: 181 AIAAETFTCFPRPHVTASFGISWSDTNCDFENAYGRADAALYKAKHNGRNRVEADISI 238 >ref|YP_584410.1| putative signaling protein [Cupriavidus metallidurans CH34] gb|ABF09141.1| putative signaling protein (GGDEF domain) [Cupriavidus metallidurans CH34] Length = 237 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 161/232 (69%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 M + DLFE E L A V AYR L +L+ +Y +LMR++RRLI RSDR E Sbjct: 1 MPEPDLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 E+N+LN RLQ+L+ EL+Y+A HD LTGALNRGAV +RA L + ++L+V+DID FKR Sbjct: 61 LEMNRLNHRLQELAQELEYRATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKR 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 +ND+FGHP GDAVI + A L+ TV GVIGR+GGEEF LLP ++ A LA ++RQ Sbjct: 121 LNDDFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQ 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRV 232 AIAG RF R VT+SFGV+W+ G FE AY RAD+ALY+AKR GRNRV Sbjct: 181 AIAGHRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRV 232 >ref|YP_003521591.1| PleD [Pantoea ananatis LMG 20103] gb|ADD78463.1| PleD [Pantoea ananatis LMG 20103] dbj|BAK12623.1| response regulator PleD [Pantoea ananatis AJ13355] Length = 236 Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 117/228 (51%), Positives = 154/228 (67%) Query: 5 DLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTERELN 64 +LF +E AL +A+ V A + YR AL +L HY +LMR++ RLISRSDR ERELN Sbjct: 6 ELFLEETQALNQASHVAAQHSLQAEEYRQALLQLNGHYQRLMRETYRLISRSDRAERELN 65 Query: 65 QLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKRINDE 124 ++N +L +L+ EL+YKA HD LT NR A+ +R L ++P +L++LDIDFFKRINDE Sbjct: 66 RVNEQLNELATELEYKATHDPLTDVWNRSAIIQRISDTLDQAPAALIILDIDFFKRINDE 125 Query: 125 FGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQAIAG 184 +GHP GD VI ELV R++ + IGR+GGEEFTI+LP L AV++AG I ++ Sbjct: 126 YGHPVGDKVICELVQRIQRNTPAIASIGRIGGEEFTIMLPNTWLGDAVIVAGAILASLNA 185 Query: 185 ERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRV 232 LP R VT+S GV+W AG+ FE Y +AD ALY AK+ GRNRV Sbjct: 186 SPLNALPERLVTASLGVSWGAAGTRFETLYTQADAALYDAKKHGRNRV 233 >ref|ZP_03828815.1| putative signaling protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 235 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/233 (51%), Positives = 155/233 (66%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 MS ++LF E L A ++ YR L L HY +L+R+S RLISRSDR E Sbjct: 1 MSTIELFTPEYDILLAARNIANQQERPAEVYRDTLLALTDHYQRLVRESHRLISRSDRAE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 +ELN+LNA+L QL+ EL+YKA HD LTG NRGA+ ER + L+++ +L+VLDID FK+ Sbjct: 61 KELNRLNAQLNQLAVELEYKASHDPLTGVYNRGAIIERINHALERNQAALIVLDIDHFKQ 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 +ND +GHPTGDAVI +LV+R++ ++ IGRVGGEEFTILL G L AV LA R+ Q Sbjct: 121 VNDTYGHPTGDAVICDLVSRVQNVLNTTSSIGRVGGEEFTILLEGNTLMQAVSLASRLHQ 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVE 233 + LP + VT+SFGV+WA + F+ Y AD ALYQAK GRNRVE Sbjct: 181 DLNRMPLSVLPQQRVTASFGVSWAPQKTRFDALYGAADAALYQAKEKGRNRVE 233 >ref|YP_004117171.1| diguanylate cyclase [Pantoea sp. At-9b] gb|ADU70615.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 236 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/228 (50%), Positives = 150/228 (65%) Query: 5 DLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTERELN 64 +LF +E+ L R+ DV A ++ YR AL L +HY +LMR++ RLISRSDR ERELN Sbjct: 6 ELFREESEVLHRSQDVAAQSSLSAEDYRNALLRLNRHYQRLMRETYRLISRSDRAERELN 65 Query: 65 QLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKRINDE 124 ++N +L QL+ EL+YKA HD LT NR A+ +R L P +L++LDID FK+INDE Sbjct: 66 RVNEQLNQLAQELEYKATHDPLTAVWNRSAIIQRIMLTLAHGPAALIILDIDHFKKINDE 125 Query: 125 FGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQAIAG 184 FGHP GD VI ELV+R++ IGR+GGEEFT+LLP L AV++AG I ++ Sbjct: 126 FGHPMGDKVICELVSRVQAHCPAEANIGRIGGEEFTVLLPHFRLSDAVIVAGAIHASLNA 185 Query: 185 ERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRV 232 LP + VT+S GV++ GSDFE Y AD ALY AK GRNRV Sbjct: 186 SPLAVLPGQLVTASLGVSYGKPGSDFETLYNNADAALYDAKNHGRNRV 233 >ref|YP_003016567.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gb|ACT12031.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 235 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 119/233 (51%), Positives = 154/233 (66%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 MS ++LF E L A ++ YR L L HY +L+R+S RLISRSDR E Sbjct: 1 MSTIELFTPEYDILLAARNIANQQERPAEVYRDTLLALTDHYQRLVRESHRLISRSDRAE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 +ELN+LNA+L QL+ EL+YKA HD LT NRGA+ ER + L+++ +L+VLDID FK Sbjct: 61 KELNRLNAQLNQLAVELEYKASHDPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKL 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 +ND +GHPTGDAVI +LV+R++ ++ IGRVGGEEFTILL G L AV LA R+ Q Sbjct: 121 VNDTYGHPTGDAVICDLVSRVQNVLNTTSSIGRVGGEEFTILLEGHTLMQAVSLASRLHQ 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVE 233 + LP + VT+SFGV+WA + F+ Y+ AD ALYQAK GRNRVE Sbjct: 181 DLNRMPLSVLPQQRVTASFGVSWAPQKTRFDALYSAADAALYQAKEKGRNRVE 233 >ref|YP_049193.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043] emb|CAG73997.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043] Length = 235 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/233 (50%), Positives = 154/233 (66%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 MS ++LF E L A ++ YR L L HY +L+R+S RLISRSDR E Sbjct: 1 MSTIELFTPEYDILLAARNIANQQERPAEVYRDTLMALTDHYQRLVRESHRLISRSDRAE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 +ELN+LNA+L QL+ EL+YKA HD LT NRGA+ ER + L+++ +L+VLDID FK+ Sbjct: 61 KELNRLNAQLNQLAVELEYKASHDPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKQ 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 +ND +GHPTGDAVI +LV+R++ ++ IGRVGGEEFTILL G L AV LA ++ Q Sbjct: 121 VNDTYGHPTGDAVICDLVSRVQHVLNTTSSIGRVGGEEFTILLEGHTLMQAVALASQLHQ 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVE 233 + LP + VT+SFGV+WA + F+ Y AD ALY+AK GRNRVE Sbjct: 181 DLNRMPLSVLPQQRVTASFGVSWAPQKTSFDALYGAADVALYKAKEKGRNRVE 233 >ref|ZP_03831249.1| putative signaling protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 235 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/233 (50%), Positives = 153/233 (65%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 MS ++LF E L A ++ YR L L HY +L+R+S RLISRSDR E Sbjct: 1 MSTIELFTPEYDILLAARNIANQQERPAEVYRDTLLALTDHYQRLVRESHRLISRSDRAE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 +ELN+LNA+L QL+ EL+YKA HD LT NRGA+ E + L+++ +L+VLDID FK+ Sbjct: 61 KELNRLNAQLNQLAVELEYKASHDPLTSVYNRGAIIEHINHALERNQAALIVLDIDHFKQ 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 +ND +GHPTGDAVI +LV+R++ ++ IGRVGGEEFTILL G L AV LA R+ Q Sbjct: 121 VNDTYGHPTGDAVICDLVSRVQQILNTTSSIGRVGGEEFTILLEGHTLMQAVSLASRLHQ 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVE 233 + LP + VT+SFGV+WA + F+ Y AD ALYQAK GRNRVE Sbjct: 181 DLNRMPLSVLPQQRVTASFGVSWAPQKTRFDALYGAADAALYQAKEKGRNRVE 233 >ref|YP_003260675.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gb|ACX89068.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 235 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 117/233 (50%), Positives = 153/233 (65%) Query: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 MS +DLF E L A+++ YR L L HY +L+R+S RLISRSDR E Sbjct: 1 MSTIDLFTPEYDILLAAHNIANQQERPAEVYRDTLLALTDHYQRLVRESHRLISRSDRAE 60 Query: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 +ELN+LNA+L QL+ EL+YKA HD LT NRGA+ ER + L+++ +L+VLDID FK+ Sbjct: 61 KELNRLNAQLNQLAVELEYKASHDPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKQ 120 Query: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 +ND +GHPTGDAVI +LV+R++ + IGRVGGEEFTILL G L AV LA ++ Sbjct: 121 VNDTYGHPTGDAVICDLVSRVQHLLSTTNSIGRVGGEEFTILLEGYTLMQAVALASQLHH 180 Query: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVE 233 + LP + VT+SFGV+WA + F+ Y AD ALY+AK GRNRVE Sbjct: 181 DLNRMPLSVLPQQRVTASFGVSWAPQKTRFDALYGAADIALYKAKEKGRNRVE 233