BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0001.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777190.1| Tfp pilus assembly protein, pilus retraction... 677 0.0 gb|EGY52702.1| twitching motility protein PilT [Neisseria shayeg... 386 e-105 ref|YP_004751412.1| twitching motility protein [Collimonas fungi... 384 e-104 ref|ZP_03720024.1| hypothetical protein NEIFLAOT_01876 [Neisseri... 384 e-104 ref|ZP_08685601.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol ki... 382 e-104 ref|ZP_05978566.1| 4-diphosphocytidyl-2C-methyl-D-erythritol kin... 382 e-104 ref|ZP_04756601.1| Type II/IV secretion system protein [Neisseri... 381 e-104 ref|YP_316177.1| pilus retraction ATPase PilT [Thiobacillus deni... 381 e-104 ref|ZP_05984246.1| 4-diphosphocytidyl-2C-methyl-D-erythritol kin... 381 e-104 ref|YP_525108.1| twitching motility protein [Rhodoferax ferrired... 381 e-103 >ref|YP_003777190.1| Tfp pilus assembly protein, pilus retraction ATPase PilT protein [Herbaspirillum seropedicae SmR1] gb|ADJ65282.1| Tfp pilus assembly protein, pilus retraction ATPase PilT protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/351 (99%), Positives = 349/351 (99%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH Sbjct: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPA AIRHLGREPPTLAQLGAPPLCAELAE Sbjct: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAVAIRHLGREPPTLAQLGAPPLCAELAE 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT Sbjct: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT DLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM Sbjct: 181 HTADLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA Sbjct: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLRQHLGQEPQAGPGMAV 351 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLRQHLGQEPQAGPGMAV Sbjct: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLRQHLGQEPQAGPGMAV 351 >gb|EGY52702.1| twitching motility protein PilT [Neisseria shayeganii 871] Length = 349 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/336 (55%), Positives = 248/336 (73%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 M I LLAF+V+N+ASDLHL AG+PP++RVHG +RR+NL ++ + ++M Sbjct: 4 MQITDLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPEMNAEEVGNMIASIMNDHQR 63 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 Y Q E DF+ EL + RFRV+AF + GPAA R + TL +L AP + ++++ Sbjct: 64 KNYQQNLETDFSFELPNVSRFRVNAFNTERGPAAVFRTIPSRVLTLEELNAPSVFKKISD 123 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 GLVLVTGPTG+GKS+TLAAMI ++N +A HILTIEDPIEF+H +++L++QREL Sbjct: 124 TPRGLVLVTGPTGSGKSTTLAAMIDYVNSNQASHILTIEDPIEFVHVSKKSLVNQRELHQ 183 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPD++LVGE+RD +TI LALTAAETGHLV GTLH AA+TV+R+ Sbjct: 184 HTHSFANALRSALREDPDIILVGEMRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRI 243 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPAGEKE R+ML+ESL+ VI+QTLL T DG+ RVAAHE+L++TPAVRNLIRE + A Sbjct: 244 IDVFPAGEKEMVRSMLSESLRAVISQTLLKTRDGKGRVAAHEILISTPAVRNLIRENKIA 303 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLR 336 Q+ S +Q G + GMQTL+ ALQ L ++G IS +T R Sbjct: 304 QIGSTLQTGQSHGMQTLDQALQSLVKRGTISLETAR 339 >ref|YP_004751412.1| twitching motility protein [Collimonas fungivorans Ter331] gb|AEK60589.1| Twitching motility protein [Collimonas fungivorans Ter331] Length = 347 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/348 (55%), Positives = 248/348 (71%), Gaps = 1/348 (0%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 MDI+ LLAF+V+N++SDLHL AG+PP++RVHG +RR+NL + + +M Sbjct: 1 MDISELLAFSVKNKSSDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHSMIYDIMNDGQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 Y + ECDF+ E+ L RFRV+AF + G AA +R + TL QL AP + AELA Sbjct: 61 KAYEEHLECDFSFEIPGLARFRVNAFNQDRGAAAVLRTIPSTVLTLEQLNAPRIFAELAL 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 + GLVLVTGPTG+GKS+TLAAM+ H+NE HILTIEDPIEF+H + LI+QRE+G Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHQSNKCLINQREVGP 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPDV+LVGELRD +TIRLALTAAETGHLV GTLH +SAA+T++R+ Sbjct: 181 HTHSFSNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFP EKE RAML+ESLQ VI+Q+LL T DG RVAAHE+++ TPA+RNLIRE + A Sbjct: 241 VDVFPGEEKEMVRAMLSESLQAVISQSLLKTKDGSGRVAAHEIMLGTPAIRNLIRESKIA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLRQHLGQEPQAGPG 348 Q+ S +Q G+ GMQTL++ L L ++ IS + R + P PG Sbjct: 301 QMYSAIQTGSNMGMQTLDSNLTELVKRNVISLASARA-AAKTPDNFPG 347 >ref|ZP_03720024.1| hypothetical protein NEIFLAOT_01876 [Neisseria flavescens NRL30031/H210] gb|EEG33073.1| hypothetical protein NEIFLAOT_01876 [Neisseria flavescens NRL30031/H210] Length = 348 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/336 (57%), Positives = 246/336 (73%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 M I LLAF V+N+ASDLHL AGM P++RVHG +RR+NL + ++ + ++M Sbjct: 1 MQITDLLAFGVKNKASDLHLSAGMSPMIRVHGDIRRINLPEMSSEEVGTMITSVMNDHQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 Y Q E DF+ EL + RFRV+AF+ + GPAA R + TL +L AP + ++AE Sbjct: 61 KIYQQDFEVDFSFELPNVARFRVNAFMTERGPAAVFRTIPSTVLTLEELHAPRIFQKIAE 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 GLVLVTGPTG+GKS+TLAAM+ ++NET+ HILTIEDPIEF+H ++AL++QREL Sbjct: 121 NPRGLVLVTGPTGSGKSTTLAAMVNYINETQPAHILTIEDPIEFVHQSKKALVNQRELHQ 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPDV+LVGE+RD +TI LALTAAETGHLV GTLH AA+TV+R+ Sbjct: 181 HTHSFANALRSALREDPDVILVGEMRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRI 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPAGEKE R+ML+ESL+ VI+QTLL T DG RVAAHE+L++TPAVRNLIRE + A Sbjct: 241 VDVFPAGEKEMVRSMLSESLRAVISQTLLKTHDGNGRVAAHEILISTPAVRNLIRENKIA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLR 336 Q+ S +Q G + GMQTL+ ALQ L +QG IS R Sbjct: 301 QINSALQTGQSHGMQTLDQALQALVRQGTISPDVAR 336 >ref|ZP_08685601.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Neisseria macacae ATCC 33926] gb|EGQ75943.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Neisseria macacae ATCC 33926] Length = 348 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/336 (57%), Positives = 244/336 (72%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 M I LLAF V+N+ASDLHL AGM P++RVHG +RR+NL + ++ + ++M Sbjct: 1 MQITDLLAFGVKNKASDLHLSAGMSPMIRVHGDIRRINLPEMSAEEVGNMVTSVMNDHQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 + Q E DF+ EL + RFRV+AF GPAA R + + TL L AP + ++A+ Sbjct: 61 KLFQQDLEVDFSFELPNVARFRVNAFTSNRGPAAVFRTIPSDVLTLEDLRAPRIFQKIAD 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 GLVLVTGPTG+GKS+TLAAMI ++NET+ HILTIEDPIEF+H ++AL++QREL Sbjct: 121 NPRGLVLVTGPTGSGKSTTLAAMINYINETQPAHILTIEDPIEFVHQSKKALVNQRELHQ 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPDV+LVGE+RD +TI LALTAAETGHLV GTLH AA+TV+R+ Sbjct: 181 HTHSFANALRSALREDPDVILVGEMRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRI 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPAGEKE R+ML+ESL+ VI+QTLL T DG RVAAHE+L++TPAVRNLIRE + A Sbjct: 241 VDVFPAGEKEMVRSMLSESLRAVISQTLLKTRDGNGRVAAHEILISTPAVRNLIRENKIA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLR 336 Q+ S +Q G A GMQTL+ ALQ L +QG IS R Sbjct: 301 QINSALQTGQAHGMQTLDQALQTLVRQGTISPDVAR 336 >ref|ZP_05978566.1| 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Neisseria mucosa ATCC 25996] gb|EFC87331.1| 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Neisseria mucosa ATCC 25996] Length = 348 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/336 (57%), Positives = 244/336 (72%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 M I LLAF V+N+ASDLHL AGM P++RVHG +RR+NL + ++ + ++M Sbjct: 1 MQITDLLAFGVKNKASDLHLSAGMSPMIRVHGDIRRINLPEMSAEEVGNMVTSVMNDHQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 + Q E DF+ EL + RFRV+AF GPAA R + + TL L AP + ++A+ Sbjct: 61 KLFQQDLEVDFSFELPNVARFRVNAFTSNRGPAAVFRTIPSDVLTLEDLRAPRIFQKIAD 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 GLVLVTGPTG+GKS+TLAAMI ++NET+ HILTIEDPIEF+H ++AL++QREL Sbjct: 121 NPRGLVLVTGPTGSGKSTTLAAMINYINETQPAHILTIEDPIEFVHQSKKALVNQRELHQ 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPDV+LVGE+RD +TI LALTAAETGHLV GTLH AA+TV+R+ Sbjct: 181 HTHSFANALRSALREDPDVILVGEMRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRI 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPAGEKE R+ML+ESL+ VI+QTLL T DG RVAAHE+L++TPAVRNLIRE + A Sbjct: 241 VDVFPAGEKEMVRSMLSESLRAVISQTLLKTRDGNGRVAAHEILISTPAVRNLIRENKIA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLR 336 Q+ S +Q G A GMQTL+ ALQ L +QG IS R Sbjct: 301 QINSALQTGQAHGMQTLDQALQTLVRQGTISPDVAR 336 >ref|ZP_04756601.1| Type II/IV secretion system protein [Neisseria flavescens SK114] gb|EER57525.1| Type II/IV secretion system protein [Neisseria flavescens SK114] Length = 348 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/336 (55%), Positives = 247/336 (73%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 M I LLAF V+N+ASDLHL +G+ P++RVHG +RR+NL + ++ + ++M Sbjct: 1 MQITDLLAFGVKNKASDLHLSSGISPMIRVHGDIRRINLPEMSSEEVGTMITSVMNDHQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 Y Q E DF+ EL + RFRV+AF+ + GPAA R + TL +L AP + ++AE Sbjct: 61 KLYQQDFEVDFSFELPNVARFRVNAFMTERGPAAVFRTIPGTVLTLEELRAPRIFQKIAE 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 GLVLVTGPTG+GKS+TLAAM+ ++NET+ HILTIEDPIEF+H ++ALI+QREL Sbjct: 121 NPRGLVLVTGPTGSGKSTTLAAMVNYINETQPAHILTIEDPIEFVHQSKKALINQRELHQ 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPDV+L+GE+RD +TI LALTAAETGHLV GTLH AA+T++R+ Sbjct: 181 HTNSFTNALRSALREDPDVILIGEMRDPETISLALTAAETGHLVFGTLHTTGAAKTIDRI 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPAGEKE R+ML+ESL+ +I+QTLL T DG RVAAHE+L++TPAVRNLIRE + A Sbjct: 241 VDVFPAGEKEIVRSMLSESLRAIISQTLLKTRDGNGRVAAHEILISTPAVRNLIRENKIA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLR 336 Q+ + +Q G A GMQTL+ ALQ L +QG IS + R Sbjct: 301 QINAALQTGQAHGMQTLDQALQTLVRQGTISPELAR 336 >ref|YP_316177.1| pilus retraction ATPase PilT [Thiobacillus denitrificans ATCC 25259] gb|AAZ98372.1| Pilus retraction protein PilT [Thiobacillus denitrificans ATCC 25259] Length = 347 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/336 (54%), Positives = 248/336 (73%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 MDI+ LLAFAV+N+ASDLHL +G+PP++RV+G +RR+NL + + + +M + Sbjct: 1 MDISELLAFAVKNKASDLHLSSGLPPMIRVNGDIRRINLPPMEHKDVHRMVYDIMNDSQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 Y + E DF+ E+ +L RFRV+AF +Q G A R + + TL +L PP+ E+A+ Sbjct: 61 KVYEETLEIDFSFEIPSLARFRVNAFNQQYGAGAVFRTIPSKVLTLEELNCPPIFKEIAD 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 + G+VLVTGPTG+GKS+TLAAM+ ++NE + HILT+EDPIEF+H ++ LI+QRE+G Sbjct: 121 QPRGIVLVTGPTGSGKSTTLAAMMDYVNENQYSHILTVEDPIEFVHQSKKCLINQREVGP 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPDV+LVGELRD +TIRLALTAAETGHLV GTLH +SAA+T++R+ Sbjct: 181 HTLSFNNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRV 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPA EKE R+ML+ESL+ VI+QTLL T DG RVAAHE++V TPA+RNLIRE + A Sbjct: 241 VDVFPAAEKEMVRSMLSESLRAVISQTLLKTKDGTGRVAAHEIMVGTPAIRNLIRENKVA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLR 336 Q+ S +Q G GMQTL+ LQ L ++ I++ R Sbjct: 301 QMYSAIQTGGNLGMQTLDQNLQDLVRRNVIASNVAR 336 >ref|ZP_05984246.1| 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Neisseria subflava NJ9703] gb|EFC53511.1| 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Neisseria subflava NJ9703] Length = 348 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/336 (55%), Positives = 247/336 (73%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 M I LLAF V+N+ASDLHL +G+ P++RVHG +RR+NL + ++ + ++M Sbjct: 1 MQITDLLAFGVKNKASDLHLSSGISPMIRVHGDIRRINLPEMSSEEVGTMITSVMNDHQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 Y Q E DF+ EL + RFRV+AF+ + GPAA R + TL +L AP + ++AE Sbjct: 61 KLYQQDFEVDFSFELPNVARFRVNAFMTERGPAAVFRTIPSTVLTLEELRAPRIFQKIAE 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 GLVLVTGPTG+GKS+TLAAM+ ++NET+ HILTIEDPIEF+H ++ALI+QREL Sbjct: 121 NPRGLVLVTGPTGSGKSTTLAAMVNYINETQPAHILTIEDPIEFVHQSKKALINQRELHQ 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT ALR+ALR DPDV+L+GE+RD +TI LALTAAETGHLV GTLH AA+T++R+ Sbjct: 181 HTHSFTNALRSALREDPDVILIGEMRDPETISLALTAAETGHLVFGTLHTTGAAKTIDRI 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPAGEKE R+ML+ESL+ +I+QTLL T DG RVAAHE+L++TPAVRNLIRE + A Sbjct: 241 VDVFPAGEKEIVRSMLSESLRAIISQTLLKTRDGNGRVAAHEILISTPAVRNLIRENKIA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLR 336 Q+ + +Q G A GMQTL+ ALQ L +QG IS + R Sbjct: 301 QINAALQTGQAHGMQTLDQALQTLVRQGTISPELAR 336 >ref|YP_525108.1| twitching motility protein [Rhodoferax ferrireducens T118] gb|ABD71577.1| pilus retraction ATPase PilT [Rhodoferax ferrireducens T118] Length = 347 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/348 (53%), Positives = 251/348 (72%), Gaps = 1/348 (0%) Query: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 MDI LLAF+V+N+ASDLHL +G+PP++RV+G +RR+N++A Q+ + +M + Sbjct: 1 MDITQLLAFSVKNKASDLHLSSGLPPMIRVNGDVRRINVEALDHKQVHAMVYDIMNDSQR 60 Query: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAAAIRHLGREPPTLAQLGAPPLCAELAE 120 Y + E DF+ E+ L RFRV+A+ +Q G A R + + TL QL AP + A+LA Sbjct: 61 KVYEEFWEVDFSFEIEGLARFRVNAYNQQRGAGAVFRTIPSKILTLEQLNAPKIFADLAL 120 Query: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 + GLVLVTGPTG+GKS+TLAAM+ LNET HILT+EDPIEF+H ++ L++QRE+GT Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNFLNETEFGHILTVEDPIEFVHESKKCLVNQREVGT 180 Query: 181 HTTDLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 HT AALR+ALR DPD +LVGE+RD +TIRLA+TAAETGHLV GTLH +SAA+T++R+ Sbjct: 181 HTLSFAAALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRV 240 Query: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 +DVFPA EKE RAML+ESLQ VI+QTL T DG+ RVAAHE+++ T A+RNLIRE + A Sbjct: 241 IDVFPAEEKEMVRAMLSESLQAVISQTLCKTKDGQGRVAAHEIMLGTSAIRNLIREAKVA 300 Query: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLRQHLGQEPQAGPG 348 Q+ S +Q G + GMQTL+ L L ++ IS R + P+ PG Sbjct: 301 QMYSSIQTGNSVGMQTLDQNLSDLVKRNIISPSEARSK-AKIPENFPG 347