BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0234.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776445.1| peptide methionine sulfoxide reductase [Herb... 466 e-129 ref|YP_782865.1| methionine sulfoxide reductase A [Rhodopseudomo... 293 2e-77 ref|NP_773683.1| methionine sulfoxide reductase A [Bradyrhizobiu... 291 4e-77 ref|YP_001207800.1| methionine sulfoxide reductase A [Bradyrhizo... 290 1e-76 ref|YP_533687.1| methionine sulfoxide reductase A [Rhodopseudomo... 289 2e-76 ref|YP_004110617.1| peptide methionine sulfoxide reductase [Rhod... 289 2e-76 ref|YP_485138.1| methionine sulfoxide reductase A [Rhodopseudomo... 288 6e-76 ref|NP_949406.2| methionine sulfoxide reductase A [Rhodopseudomo... 283 1e-74 ref|YP_549555.1| peptide methionine sulfoxide reductase [Polarom... 283 1e-74 ref|ZP_08627224.1| peptide methionine sulfoxide reductase MsrA [... 283 2e-74 >ref|YP_003776445.1| peptide methionine sulfoxide reductase [Herbaspirillum seropedicae SmR1] gb|ADJ64537.1| peptide methionine sulfoxide reductase protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MSRFKPAVLALCLALSTLAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQG 60 MSRFKPAVLALCLALSTLAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQG Sbjct: 1 MSRFKPAVLALCLALSTLAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQG 60 Query: 61 VFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSV 120 VFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSV Sbjct: 61 VFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSV 120 Query: 121 AHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGF 180 AHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGF Sbjct: 121 AHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGF 180 Query: 181 YAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLVFKR 229 YAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLVFKR Sbjct: 181 YAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLVFKR 229 >ref|YP_782865.1| methionine sulfoxide reductase A [Rhodopseudomonas palustris BisA53] gb|ABJ07885.1| peptide methionine sulfoxide reductase [Rhodopseudomonas palustris BisA53] Length = 237 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/209 (66%), Positives = 164/209 (78%), Gaps = 2/209 (0%) Query: 18 LAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAG 77 + A A+E AV +PAP +AA +T VLAGGCFWGVQGVFQHT GV+ AVSGYAG Sbjct: 24 IRAVQASEEAVVIPAPA--VDVAAKDGLQTAVLAGGCFWGVQGVFQHTAGVVNAVSGYAG 81 Query: 78 GKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQ 137 G TA Y VS+G T HAEAV++TYDP++IS+G+LLQIYFSVAHDPTQLNRQGPD GTQ Sbjct: 82 GSKLTANYTAVSTGVTSHAEAVEITYDPKQISYGKLLQIYFSVAHDPTQLNRQGPDSGTQ 141 Query: 138 YRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQ 197 YRS IFT ++QK A+AYIAQL+AAK Y PIVT++ LQGFYAAEDYHQDY TLHPNQ Sbjct: 142 YRSEIFTVTDEQKRVAEAYIAQLDAAKAYKKPIVTKIGPLQGFYAAEDYHQDYLTLHPNQ 201 Query: 198 PYIAYNDLPKIGNLQKMYPALYRADPVLV 226 PYIA+ND PKI NL+K++ +R P LV Sbjct: 202 PYIAFNDRPKIDNLKKIFTQDFRDKPTLV 230 >ref|NP_773683.1| methionine sulfoxide reductase A [Bradyrhizobium japonicum USDA 110] dbj|BAC52308.1| peptide methionine sulfoxide reductase [Bradyrhizobium japonicum USDA 110] Length = 234 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 140/206 (67%), Positives = 165/206 (80%), Gaps = 2/206 (0%) Query: 21 AHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKA 80 + AAE AV +PAP A A ++ +T V+AGGCFWGVQGVFQHT GV+ AVSGYAGG Sbjct: 24 SRAAEDAVVIPAPTMDA--APASGIQTAVIAGGCFWGVQGVFQHTAGVVNAVSGYAGGTK 81 Query: 81 DTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRS 140 TA Y VSSG TGHAE+V++ YDP+KIS+G++LQIYFSVAHDPTQLNRQGPD GTQYRS Sbjct: 82 ATADYQTVSSGRTGHAESVEIKYDPKKISYGKILQIYFSVAHDPTQLNRQGPDTGTQYRS 141 Query: 141 AIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYI 200 AIFT +E+QK+ A+AYIAQLN AKV+ PIVT+V AL+ FY AE YHQDY TLHPNQPYI Sbjct: 142 AIFTTSEEQKKVAEAYIAQLNGAKVFSKPIVTKVGALEAFYPAEAYHQDYLTLHPNQPYI 201 Query: 201 AYNDLPKIGNLQKMYPALYRADPVLV 226 AYNDLPK+ NL+K++ Y P LV Sbjct: 202 AYNDLPKVENLKKLFADNYIEKPTLV 227 >ref|YP_001207800.1| methionine sulfoxide reductase A [Bradyrhizobium sp. ORS 278] emb|CAL79585.1| peptide methionine sulfoxide reductase msrA [Bradyrhizobium sp. ORS 278] Length = 238 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 144/225 (64%), Positives = 168/225 (74%), Gaps = 4/225 (1%) Query: 4 FKPAVLALCLALSTLA--AAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQGV 61 K AVL LA HAAE AV +P P AS ET V+AGGCFWGVQGV Sbjct: 9 IKTAVLGALAVAGILAWQPLHAAEEAVVIPPPAQDQ--PASDGLETAVVAGGCFWGVQGV 66 Query: 62 FQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVA 121 +QHT GV+ AVSGYAGG TA Y VS+GSTGHAE+VQ+ +DP+K+S+G++LQI+FSV Sbjct: 67 YQHTAGVISAVSGYAGGTKATADYRTVSTGSTGHAESVQIKFDPKKVSYGKILQIFFSVV 126 Query: 122 HDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFY 181 HDPTQLNRQGPD GTQYRSAIFT +E QK+ A+AYIAQL+ AKV+G PIVT+V L+ FY Sbjct: 127 HDPTQLNRQGPDTGTQYRSAIFTTSETQKKVAEAYIAQLDKAKVFGKPIVTKVGKLEAFY 186 Query: 182 AAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLV 226 AEDYHQDY TLHPNQPYIAYNDLPKI NL+K++ Y P LV Sbjct: 187 PAEDYHQDYLTLHPNQPYIAYNDLPKIDNLKKIFAENYIDKPTLV 231 >ref|YP_533687.1| methionine sulfoxide reductase A [Rhodopseudomonas palustris BisB18] gb|ABD89368.1| peptide methionine sulfoxide reductase [Rhodopseudomonas palustris BisB18] Length = 235 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/206 (67%), Positives = 164/206 (79%), Gaps = 2/206 (0%) Query: 21 AHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKA 80 A A+E AV +P P + +S +T V+AGGCFWGVQGVFQHT GVL AVSGYAGG Sbjct: 25 AQASEDAVVIPPPA--VDVPSSDGVQTAVIAGGCFWGVQGVFQHTAGVLNAVSGYAGGAK 82 Query: 81 DTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRS 140 TA Y VSSG TGHAEAV++ YDP++IS+GQ+LQI+FSVAHDPTQLNRQGPD GTQYRS Sbjct: 83 LTANYTAVSSGMTGHAEAVEIKYDPKQISYGQILQIFFSVAHDPTQLNRQGPDSGTQYRS 142 Query: 141 AIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYI 200 AIFTAN++QK+ A+AYIAQL AAK++ PIVT V AL GFYAAE YHQDY TLHPNQPYI Sbjct: 143 AIFTANDEQKKVAEAYIAQLGAAKLFKKPIVTTVGALDGFYAAEAYHQDYLTLHPNQPYI 202 Query: 201 AYNDLPKIGNLQKMYPALYRADPVLV 226 A+NDLPK+ NL+K++ Y P LV Sbjct: 203 AFNDLPKVENLKKLFAQRYIEKPTLV 228 >ref|YP_004110617.1| peptide methionine sulfoxide reductase [Rhodopseudomonas palustris DX-1] gb|ADU45884.1| peptide methionine sulfoxide reductase [Rhodopseudomonas palustris DX-1] Length = 236 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 142/224 (63%), Positives = 170/224 (75%), Gaps = 8/224 (3%) Query: 9 LALC------LALSTLAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQGVF 62 LALC LA STL + AAE V +P P A A +T V AGGCFWGVQGVF Sbjct: 8 LALCAAVVGALAWSTLGPSRAAEEPVVIPPPQLDAKEAGG--IQTAVFAGGCFWGVQGVF 65 Query: 63 QHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAH 122 QHT GV+ A+SGYAGG TA+Y +VS+G+T HAEAV++ YDP++IS+G+LLQIYFSVAH Sbjct: 66 QHTAGVVNALSGYAGGSKATASYPLVSTGTTSHAEAVEIKYDPKRISYGKLLQIYFSVAH 125 Query: 123 DPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFYA 182 DPTQL+RQGPD G QYRSAIF +++QK+ A+AYIAQL+AAKV+G+PI T+V L GFYA Sbjct: 126 DPTQLDRQGPDVGPQYRSAIFATSDEQKKVAEAYIAQLDAAKVFGSPIATKVGPLDGFYA 185 Query: 183 AEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLV 226 AE YHQDY TLHPNQPYI YNDLPKI L+K++P Y P LV Sbjct: 186 AETYHQDYLTLHPNQPYIVYNDLPKIEALKKLFPTEYLDKPTLV 229 >ref|YP_485138.1| methionine sulfoxide reductase A [Rhodopseudomonas palustris HaA2] gb|ABD06227.1| peptide methionine sulfoxide reductase [Rhodopseudomonas palustris HaA2] Length = 236 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 140/205 (68%), Positives = 163/205 (79%), Gaps = 4/205 (1%) Query: 23 AAERAVAVPAPVGKALLAASAP-TETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKAD 81 AAE AV +P P AL +SA T+T V AGGCFWGVQGVFQHT GVL AVSGY+GG Sbjct: 28 AAEDAVVIPPP---ALDVSSADGTQTAVFAGGCFWGVQGVFQHTAGVLNAVSGYSGGSQA 84 Query: 82 TATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSA 141 TA Y +S+G+TGHAEAV++ Y+P++IS+GQLLQI+FSV HDPTQLNRQGPD GTQYRSA Sbjct: 85 TANYTAISTGATGHAEAVEIKYNPKQISYGQLLQIFFSVVHDPTQLNRQGPDVGTQYRSA 144 Query: 142 IFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIA 201 IFT N++QK+ A AYIAQL+AA+VY PIVT+V L GFYAAE YHQDY TLHP QPYI Sbjct: 145 IFTVNDEQKKVADAYIAQLDAARVYKKPIVTKVGPLDGFYAAEAYHQDYLTLHPTQPYIV 204 Query: 202 YNDLPKIGNLQKMYPALYRADPVLV 226 YNDLPKI NL+K++P Y P LV Sbjct: 205 YNDLPKIENLKKLFPKDYLTKPTLV 229 >ref|NP_949406.2| methionine sulfoxide reductase A [Rhodopseudomonas palustris CGA009] Length = 236 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 2/206 (0%) Query: 21 AHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKA 80 + AAE V +P P A A +T V AGGCFWGVQGVFQHT GV+ A+SGYAGG Sbjct: 26 SRAAEEPVVIPPPQLDAKEAGG--IQTAVFAGGCFWGVQGVFQHTAGVVNALSGYAGGSK 83 Query: 81 DTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRS 140 +A+Y +VS+G+TGHAEAV+V YDP++IS+G+LLQIYFSVAHDPTQL+RQGPD G QYRS Sbjct: 84 ASASYPLVSTGTTGHAEAVEVKYDPKRISYGKLLQIYFSVAHDPTQLDRQGPDTGPQYRS 143 Query: 141 AIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYI 200 AIFT +++QK A AYIAQL+AAKV+GAPIVT+V L+GFYAAE YHQDY TLHP QPYI Sbjct: 144 AIFTTSDEQKRIADAYIAQLDAAKVFGAPIVTKVGPLKGFYAAEAYHQDYLTLHPTQPYI 203 Query: 201 AYNDLPKIGNLQKMYPALYRADPVLV 226 AYNDLPKI L+K++P Y P LV Sbjct: 204 AYNDLPKIEALKKLFPTEYLDKPTLV 229 >ref|YP_549555.1| peptide methionine sulfoxide reductase [Polaromonas sp. JS666] gb|ABE44657.1| peptide methionine sulfoxide reductase [Polaromonas sp. JS666] Length = 242 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 140/224 (62%), Positives = 165/224 (73%), Gaps = 4/224 (1%) Query: 7 AVLALCLALSTLAAAHAAERAVAVPAPV----GKALLAASAPTETLVLAGGCFWGVQGVF 62 A+ A + + A E+AV +PAP A A + T V AGGCFWGVQ VF Sbjct: 14 ALAAWVFVGGGMGVSSAEEKAVKLPAPAMDMPATAQAGPQAGSATAVFAGGCFWGVQAVF 73 Query: 63 QHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAH 122 QHTQGVL AVSGYAGG+ TA+Y M+ SG TGHAE+VQ+TYDP+KIS+G+LLQIYFSVAH Sbjct: 74 QHTQGVLNAVSGYAGGEKATASYEMIGSGRTGHAESVQITYDPKKISYGKLLQIYFSVAH 133 Query: 123 DPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGFYA 182 DPT LNRQGPD GTQYRSA+F + QK+ ++YIAQL+AAKV+ IVTQ+T L GFY Sbjct: 134 DPTTLNRQGPDSGTQYRSAVFYQDANQKKVTESYIAQLDAAKVFPNKIVTQLTPLNGFYP 193 Query: 183 AEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLV 226 AE YHQDYATLHPNQPYIA DLPKI NL+ + P +YR PVLV Sbjct: 194 AEAYHQDYATLHPNQPYIARFDLPKIANLKTVMPEVYRDKPVLV 237 >ref|ZP_08627224.1| peptide methionine sulfoxide reductase MsrA [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09850.1| peptide methionine sulfoxide reductase MsrA [Bradyrhizobiaceae bacterium SG-6C] Length = 242 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 130/181 (71%), Positives = 149/181 (82%) Query: 46 ETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDP 105 +T VLAGGCFWGVQGV+QHT+GV AVSGYAGGKA+TA Y V G+TGHAEAVQ+TYDP Sbjct: 55 KTFVLAGGCFWGVQGVYQHTKGVTNAVSGYAGGKAETAKYETVGRGTTGHAEAVQITYDP 114 Query: 106 RKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKV 165 +++S G+LLQIYFSV HDPTQLNRQGPD GTQYRS IFT++ +K+ AQ YIAQLNAAKV Sbjct: 115 KQVSLGKLLQIYFSVVHDPTQLNRQGPDSGTQYRSTIFTSDPAEKKLAQDYIAQLNAAKV 174 Query: 166 YGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVL 225 Y I T + LQGFYAAEDYHQDY TLHPNQPYI +NDLPKI NL+K++ YR P L Sbjct: 175 YKKTIATTIEPLQGFYAAEDYHQDYLTLHPNQPYIVFNDLPKIENLKKIFAENYRDKPAL 234 Query: 226 V 226 V Sbjct: 235 V 235