BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0215.p (68 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776424.1| cold shock-like transcription regulator prot... 139 1e-31 gb|AAZ39217.1| cold shock transcription regulator [Janthinobacte... 128 4e-28 ref|ZP_03712998.1| hypothetical protein EIKCOROL_00671 [Eikenell... 126 1e-27 ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]... 126 1e-27 ref|YP_003051126.1| cold-shock DNA-binding domain-containing pro... 125 2e-27 ref|ZP_04579427.1| cold shock transcription regulator [Oxalobact... 125 2e-27 ref|YP_004028212.1| Cold shock protein [Burkholderia rhizoxinica... 124 4e-27 ref|YP_004693688.1| cold-shock DNA-binding domain-containing pro... 124 5e-27 ref|YP_001892800.1| cold-shock DNA-binding domain protein [Ralst... 124 6e-27 ref|YP_314437.1| cold-shock DNA-binding protein family protein [... 124 7e-27 >ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 68 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ Sbjct: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 Query: 61 ASNIVPAA 68 ASNIVPAA Sbjct: 61 ASNIVPAA 68 >gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum] gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2] Length = 67 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/66 (92%), Positives = 63/66 (95%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATG VKWFND+KGFGFITPDEGGEDLFAHFSAIQSNGFKSL+ENQRVSFEVT GPKGKQ Sbjct: 1 MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPKGKQ 60 Query: 61 ASNIVP 66 ASNI P Sbjct: 61 ASNIQP 66 >ref|ZP_03712998.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC 23834] gb|EEG24614.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC 23834] Length = 67 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/67 (91%), Positives = 63/67 (94%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAI NGFK+LKE Q+VSFEVTTGPKGKQ Sbjct: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAINMNGFKTLKEGQKVSFEVTTGPKGKQ 60 Query: 61 ASNIVPA 67 ASNI PA Sbjct: 61 ASNIQPA 67 >ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans] ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp. Marseille] ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480] emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas arsenicoxydans] gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp. Marseille] gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480] Length = 67 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/66 (90%), Positives = 63/66 (95%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATG VKWFND+KGFGFITPDEGGEDLFAHFSAIQS+GFKSL+ENQRVSFEVT GPKGKQ Sbjct: 1 MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60 Query: 61 ASNIVP 66 ASNI P Sbjct: 61 ASNIQP 66 >ref|YP_003051126.1| cold-shock DNA-binding domain-containing protein [Methylovorus glucosetrophus SIP3-4] ref|YP_004039823.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gb|ACT50599.1| cold-shock DNA-binding domain protein [Methylovorus glucosetrophus SIP3-4] gb|ADQ84587.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 67 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 60/67 (89%), Positives = 64/67 (95%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFNDAKGFGFITPD+GGEDLFAHFSAI SNGFKSLKEN+RVSF++TTGPKGKQ Sbjct: 1 MATGTVKWFNDAKGFGFITPDDGGEDLFAHFSAIASNGFKSLKENERVSFDITTGPKGKQ 60 Query: 61 ASNIVPA 67 ASNI A Sbjct: 61 ASNIQKA 67 >ref|ZP_04579427.1| cold shock transcription regulator [Oxalobacter formigenes OXCC13] gb|EEO30400.1| cold shock transcription regulator [Oxalobacter formigenes OXCC13] Length = 67 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 59/64 (92%), Positives = 64/64 (100%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFND+KGFGFITPDEGGED+FAHFSAI+S+GFKSLKENQRVSFEVTTGPKGKQ Sbjct: 1 MATGTVKWFNDSKGFGFITPDEGGEDVFAHFSAIKSDGFKSLKENQRVSFEVTTGPKGKQ 60 Query: 61 ASNI 64 A+NI Sbjct: 61 AANI 64 >ref|YP_004028212.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] emb|CBW74068.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 98 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 59/68 (86%), Positives = 62/68 (91%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFNDAKG+GFITPDEGGEDLFAHFSAIQ NGFK+LKE Q+VSFEV GPKGKQ Sbjct: 31 MATGTVKWFNDAKGYGFITPDEGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQGPKGKQ 90 Query: 61 ASNIVPAA 68 ASNI AA Sbjct: 91 ASNIQAAA 98 >ref|YP_004693688.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas sp. Is79A3] gb|AEJ00289.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. Is79A3] Length = 67 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 59/66 (89%), Positives = 62/66 (93%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATG VKWFNDAKGFGFITPD GGEDLFAHFSAI SNGFKSL+E QRV+F+VTTGPKGKQ Sbjct: 1 MATGIVKWFNDAKGFGFITPDNGGEDLFAHFSAINSNGFKSLREAQRVTFDVTTGPKGKQ 60 Query: 61 ASNIVP 66 ASNIVP Sbjct: 61 ASNIVP 66 >ref|YP_001892800.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] ref|YP_002984301.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12D] ref|ZP_07673514.1| cold shock transcription regulator protein [Ralstonia sp. 5_7_47FAA] gb|ACD29373.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gb|ACS65629.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gb|EFP68073.1| cold shock transcription regulator protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 60/66 (90%), Positives = 62/66 (93%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFNDAKGFGFITPD+GGEDLFAHFSAI S GFKSLKE Q+VSFEVT GPKGKQ Sbjct: 1 MATGTVKWFNDAKGFGFITPDDGGEDLFAHFSAINSAGFKSLKEGQKVSFEVTQGPKGKQ 60 Query: 61 ASNIVP 66 ASNIVP Sbjct: 61 ASNIVP 66 >ref|YP_314437.1| cold-shock DNA-binding protein family protein [Thiobacillus denitrificans ATCC 25259] gb|AAZ96632.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus denitrificans ATCC 25259] Length = 68 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 59/64 (92%), Positives = 61/64 (95%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 M TGTVKWFNDAKGFGFITPD GGEDLFAHFSAI +NGFKSL+ENQRVSFEVTTGPKGKQ Sbjct: 1 METGTVKWFNDAKGFGFITPDNGGEDLFAHFSAINANGFKSLQENQRVSFEVTTGPKGKQ 60 Query: 61 ASNI 64 ASNI Sbjct: 61 ASNI 64