BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0208.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776417.1| chemotaxis signal transduction protein [Herb... 310 6e-83 ref|YP_001351707.1| CheW purine-binding chemotaxis protein [Jant... 155 2e-36 ref|YP_004473221.1| CheW protein [Pseudomonas fulva 12-X] >gi|33... 145 1e-33 ref|YP_346785.1| CheW protein [Pseudomonas fluorescens Pf0-1] >g... 143 8e-33 ref|YP_841557.1| chemotaxis signal transduction protein [Ralston... 141 4e-32 ref|YP_004682181.1| methyl-accepting chemotaxis transducer [Cupr... 140 6e-32 ref|YP_004381919.1| hypothetical protein MDS_4136 [Pseudomonas m... 140 9e-32 ref|YP_002008404.1| chemotaxis signal transducer, chew-like prot... 139 2e-31 ref|YP_297854.1| CheW protein [Ralstonia eutropha JMP134] >gi|72... 136 1e-30 ref|YP_276018.1| CheW domain-containing protein WspB [Pseudomona... 136 1e-30 >ref|YP_003776417.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64509.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 310 bits (793), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 157/158 (99%), Positives = 158/158 (100%) Query: 1 MAVLTDPLFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVID 60 MAV+TDPLFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVID Sbjct: 1 MAVVTDPLFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVID 60 Query: 61 LSQRTLGRPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDE 120 LSQRTLGRPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDE Sbjct: 61 LSQRTLGRPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDE 120 Query: 121 TPYLGPVMPYQGGLLQRVQVSALLDAATRAVLYAREDA 158 TPYLGPVMPYQGGLLQRVQVSALLDAATRAVLYAREDA Sbjct: 121 TPYLGPVMPYQGGLLQRVQVSALLDAATRAVLYAREDA 158 >ref|YP_001351707.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR90412.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] Length = 161 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 2/147 (1%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 LFLLF +G DRYAL A+VA+VLPL K++PG PAWV GL Y+G+HVPV+D+S G Sbjct: 10 LFLLFQIGRDRYALEAAQVALVLPLARLKEVPGTPAWVLGLFNYDGQHVPVLDVSLLATG 69 Query: 68 RPAAQRVSTRLVLVHDRSPAGE-PALLGLILEQATDTLRCAEQQFVRATVAHDETPYLGP 126 + AA R+STRLVLVH +PAG+ P LLGL++E+ATDTLRC F + +++ + YLGP Sbjct: 70 QAAASRLSTRLVLVH-YTPAGQAPQLLGLVVEKATDTLRCDPANFSDSGLSNQDARYLGP 128 Query: 127 VMPYQGGLLQRVQVSALLDAATRAVLY 153 V+ GL+QR+ V LLDA+ +A+L+ Sbjct: 129 VLRRDDGLIQRINVQDLLDASVQALLF 155 >ref|YP_004473221.1| CheW protein [Pseudomonas fulva 12-X] gb|AEF21127.1| CheW protein [Pseudomonas fulva 12-X] Length = 164 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/147 (55%), Positives = 100/147 (68%), Gaps = 5/147 (3%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 LFLLFS+G+DRYAL V EV VLPL CKQ+P APAWVAGL + G VPVIDL+ LG Sbjct: 17 LFLLFSMGSDRYALDVHEVVEVLPLRRCKQIPAAPAWVAGLFVFRGTPVPVIDLTAHALG 76 Query: 68 RPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETPYLGPV 127 +PA R STRLV+VH +S LGLILEQA+DTLR + FV + + YLGPV Sbjct: 77 QPAVVRTSTRLVVVHYQS-----RWLGLILEQASDTLRSPAEAFVGSGLDLPNARYLGPV 131 Query: 128 MPYQGGLLQRVQVSALLDAATRAVLYA 154 + + GL+Q V+V LLD + R +LYA Sbjct: 132 LKSEQGLVQWVRVGDLLDDSVRELLYA 158 >ref|YP_346785.1| CheW protein [Pseudomonas fluorescens Pf0-1] gb|ABA72796.1| putative chemotaxis-related protein [Pseudomonas fluorescens Pf0-1] Length = 178 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/147 (54%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 LFLLF +G++RYAL EVA VLP P K + AP WVAG+ Y G VPVIDLS T G Sbjct: 18 LFLLFRIGSERYALRATEVAEVLPRLPLKPIARAPHWVAGVFAYRGTVVPVIDLSALTFG 77 Query: 68 RPAAQRVSTRLVLVHDRSPAGEPA-LLGLILEQATDTLRCAEQQFVRATVAHDETPYLGP 126 PA R STRLVLVH R+ +PA LGLILEQATDTLRC +F + + + PYLGP Sbjct: 78 HPAQARTSTRLVLVHYRAEDSQPAQWLGLILEQATDTLRCNPDEFQSYGLDNRQAPYLGP 137 Query: 127 VMPYQGGLLQRVQVSALLDAATRAVLY 153 V GL+Q V+V+ LLD + R +L+ Sbjct: 138 VREDAQGLVQWVRVNDLLDESVRTLLF 164 >ref|YP_841557.1| chemotaxis signal transduction protein [Ralstonia eutropha H16] emb|CAJ96827.1| chemotaxis signal transduction protein [Ralstonia eutropha H16] Length = 158 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/148 (58%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 LFLLF LGAD YAL AEVA VLPLT KQ+PGAPAWVAGL+ G+ VPVIDL G Sbjct: 3 LFLLFRLGADHYALDAAEVAEVLPLTRLKQIPGAPAWVAGLMERRGQPVPVIDLPALATG 62 Query: 68 RPAAQRVSTRLVLVHDRSPAGEPA-LLGLILEQATDTLRCAEQQFVRATVAHDETPYLGP 126 PAA R STR VLVH R GE LLGL LE AT TLRC + FV +A YLGP Sbjct: 63 VPAALRTSTRTVLVHYRRHGGEAGRLLGLRLESATQTLRCPVKSFVDGGIAGASPRYLGP 122 Query: 127 VMPYQGGLLQRVQVSALLDAATRAVLYA 154 V GLLQ V+V ALL A+L+A Sbjct: 123 VRHDARGLLQWVRVDALLPDDVHAMLFA 150 >ref|YP_004682181.1| methyl-accepting chemotaxis transducer [Cupriavidus necator N-1] gb|AEI80949.1| chemotaxis signal transduction protein CheW [Cupriavidus necator N-1] Length = 158 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 86/148 (58%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 LFLLF LGAD YAL AEVA VLPLT KQ+PGAPAWVAGL+ G+ VPVIDL G Sbjct: 3 LFLLFRLGADHYALDAAEVAEVLPLTRLKQIPGAPAWVAGLMERRGQPVPVIDLPALATG 62 Query: 68 RPAAQRVSTRLVLVHDRSPAGEPA-LLGLILEQATDTLRCAEQQFVRATVAHDETPYLGP 126 PAA R STR VLVH R GE + LLGL LE AT TLRC + FV + YLGP Sbjct: 63 VPAALRTSTRTVLVHYRRHGGEASRLLGLRLESATQTLRCPAESFVDGGIGGASPRYLGP 122 Query: 127 VMPYQGGLLQRVQVSALLDAATRAVLYA 154 V GLLQ V+V ALL A+L+A Sbjct: 123 VRHDARGLLQWVRVEALLPDDVHAMLFA 150 >ref|YP_004381919.1| hypothetical protein MDS_4136 [Pseudomonas mendocina NK-01] gb|AEB60167.1| hypothetical protein MDS_4136 [Pseudomonas mendocina NK-01] Length = 164 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 76/147 (51%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 L L F LG DRYALP +EV VLPL KQ+P AP WVAGL + G+ PVIDLS+R L Sbjct: 12 LHLQFQLGEDRYALPASEVVEVLPLRRLKQIPEAPPWVAGLFEHRGKMTPVIDLSRRVLD 71 Query: 68 RPAAQRVSTRLVLVH-DRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETPYLGP 126 RPA R STR+VLV DR + +LGLILEQATDTLR + F + + + YLGP Sbjct: 72 RPARPRSSTRMVLVRFDRQLGEQSPVLGLILEQATDTLRLHSEAFKASGLEAGQADYLGP 131 Query: 127 VMPYQGGLLQRVQVSALLDAATRAVLY 153 + G++QR++V+ LLD RA+L+ Sbjct: 132 LQRDDQGMIQRIEVAGLLDDDVRALLF 158 >ref|YP_002008404.1| chemotaxis signal transducer, chew-like protein [Cupriavidus taiwanensis LMG 19424] emb|CAQ72350.1| chemotaxis signal transducer, CheW-like protein [Cupriavidus taiwanensis LMG 19424] Length = 163 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/147 (58%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 LFLLF LGAD YAL AEVA VLPLT KQ+PGAPAWVAGL+ G+ VPVIDL G Sbjct: 8 LFLLFRLGADHYALEAAEVAEVLPLTRLKQIPGAPAWVAGLMERRGQPVPVIDLPALATG 67 Query: 68 RPAAQRVSTRLVLVHDRSPAGEPA-LLGLILEQATDTLRCAEQQFVRATVAHDETPYLGP 126 PAA R STR VLVH R EP LLGL LE AT TLRC + FV A +A YLGP Sbjct: 68 VPAALRTSTRTVLVHYRRDESEPVRLLGLRLEAATQTLRCPAESFVDAGMAGASPRYLGP 127 Query: 127 VMPYQGGLLQRVQVSALLDAATRAVLY 153 V GL+Q V+V ALL A+L+ Sbjct: 128 VRHDARGLVQWVRVGALLPDDVHAMLF 154 >ref|YP_297854.1| CheW protein [Ralstonia eutropha JMP134] gb|AAZ63010.1| CheW protein [Ralstonia eutropha JMP134] Length = 162 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/148 (55%), Positives = 95/148 (64%), Gaps = 2/148 (1%) Query: 8 LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67 LFLLF LG D YAL EVA VLPLT KQ+PG+PAWVAG+L +G+ VPVIDL G Sbjct: 3 LFLLFRLGHDHYALDATEVAEVLPLTALKQIPGSPAWVAGVLSRQGQSVPVIDLRALATG 62 Query: 68 RPAAQRVSTRLVLVH-DRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETPYLGP 126 PAA R STR VLVH R+P P LLGL LE AT+TLRC + FV + YLGP Sbjct: 63 VPAALRTSTRTVLVHYRRTPCDAPRLLGLRLEHATETLRCEPESFVDTGIDAGTARYLGP 122 Query: 127 V-MPYQGGLLQRVQVSALLDAATRAVLY 153 V Q GL+Q V+V+ALL A L+ Sbjct: 123 VRHDEQRGLVQWVRVNALLPDDVHANLF 150 >ref|YP_276018.1| CheW domain-containing protein WspB [Pseudomonas syringae pv. phaseolicola 1448A] gb|AAZ33029.1| CheW domain protein WspB [Pseudomonas syringae pv. phaseolicola 1448A] gb|EFW79247.1| CheW domain-containing protein WspB [Pseudomonas syringae pv. glycinea str. B076] gb|EFW85559.1| CheW domain-containing protein WspB [Pseudomonas syringae pv. glycinea str. race 4] gb|EGH12520.1| CheW domain-containing protein WspB [Pseudomonas syringae pv. glycinea str. race 4] Length = 178 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/150 (50%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 5 TDPLFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQR 64 T LFLLF +G DRYAL E+A +LP K + AP WVAG+ + G VPVID+S Sbjct: 15 TSKLFLLFCIGEDRYALDATEIAEILPRVKLKAIAQAPHWVAGIFAHRGEIVPVIDISAL 74 Query: 65 TLGRPAAQRVSTRLVLVHDRSPAGEPA-LLGLILEQATDTLRCAEQQFVRATVAHDETPY 123 G+PA R STR+VLVH R PA LLGLILEQAT+TLRC QF + + +PY Sbjct: 75 NSGQPARSRTSTRMVLVHYRHDDAHPAQLLGLILEQATETLRCPVSQFKAYGLDNRLSPY 134 Query: 124 LGPVMPYQGGLLQRVQVSALLDAATRAVLY 153 LGPV + GLLQ + V LL R +LY Sbjct: 135 LGPVREDEQGLLQWIHVQELLSEPVRELLY 164