BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0206.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776415.1| chemotaxis signal transduction protein [Herb... 306 1e-81 ref|YP_001351705.1| CheW purine-binding chemotaxis protein [Jant... 210 1e-52 ref|YP_004753020.1| chemotaxis signal transduction protein [Coll... 189 3e-46 ref|ZP_03129653.1| CheW protein [Chthoniobacter flavus Ellin428]... 181 7e-44 ref|YP_002909271.1| chemotaxis protein cheW [Burkholderia glumae... 181 8e-44 ref|YP_004350163.1| Chemotaxis protein cheW [Burkholderia gladio... 179 2e-43 ref|YP_001861516.1| CheW protein [Burkholderia phymatum STM815] ... 179 4e-43 ref|YP_438704.1| chemotaxis protein cheW [Burkholderia thailande... 176 2e-42 ref|YP_624427.1| CheW protein [Burkholderia cenocepacia AU 1054]... 176 3e-42 ref|ZP_04942183.1| Chemotaxis signal transduction protein [Burkh... 174 6e-42 >ref|YP_003776415.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64507.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 154/156 (98%), Positives = 155/156 (99%) Query: 59 SPAPAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRG 118 +P PAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRG Sbjct: 56 APRPAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRG 115 Query: 119 ALRICVSLAQLFQFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRHDGSLGPVPTTL 178 ALRICVSLAQLFQFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRHDGSLGPVPTTL Sbjct: 116 ALRICVSLAQLFQFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRHDGSLGPVPTTL 175 Query: 179 AQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSMT 214 AQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSMT Sbjct: 176 AQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSMT 211 >ref|YP_001351705.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR90413.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] Length = 213 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/215 (49%), Positives = 138/215 (64%), Gaps = 5/215 (2%) Query: 1 MAIDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDRVSLANDALPSWQEPASP 60 + IDDCWNRIG++GD +CP+LQ + RCLNCPT+A AA LDR + D + W + Sbjct: 3 IKIDDCWNRIGVRGDNTCPKLQDYFRCLNCPTYAAAASTLLDRPTSDADLISDWGQSKQS 62 Query: 61 APAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRGAL 120 +E A S L+ R G+EW A+ T + EVAE R +HSLPHQ N AILG+ N+RG+L Sbjct: 63 LARSETAV---SALIFRAGIEWLALPTDAIVEVAEQRTIHSLPHQTNRAILGLSNVRGSL 119 Query: 121 RICVSLAQLFQFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRH-DGSLGPVPTTLA 179 +CVSL Q+ A+ +LLV +H GQ+LVFPVDEV GV R L VP+T+A Sbjct: 120 LLCVSLTQMLGAERGTAAAI-QRLLVVAHQGQSLVFPVDEVLGVQRFTQAELQAVPSTVA 178 Query: 180 QAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSMT 214 Q+ YT+ M+ + IGLLD LLFY LNRS+T Sbjct: 179 QSNTTYTQAMIVSKDKKIGLLDCGLLFYALNRSLT 213 >ref|YP_004753020.1| chemotaxis signal transduction protein [Collimonas fungivorans Ter331] gb|AEK62197.1| Chemotaxis signal transduction protein [Collimonas fungivorans Ter331] Length = 234 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 98/219 (44%), Positives = 135/219 (61%), Gaps = 11/219 (5%) Query: 3 IDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDRVSLANDALPSWQEPASPAP 62 IDDCWNRIG++GD SC +L H+ C NCP ARAA + LDR+ L + W EP Sbjct: 18 IDDCWNRIGVRGDSSCERLALHIDCRNCPVHARAAAELLDRLQLDGGS-DGWLEPGEEPQ 76 Query: 63 AAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRGALRI 122 + A S+L+ RIG EW A+ T +++E+ E R VH LPH++N +LG+ NIRGAL Sbjct: 77 QDD--ADLHSLLLFRIGEEWLALPTALLEEITELRSVHRLPHRQNAVVLGITNIRGALVT 134 Query: 123 CVSLAQLFQFGAAAP-------KALPPKLLVASHDGQTLVFPVDEVAGVHRHDGSL-GPV 174 CVSLA + G ++ + L ++L+ H+GQT F DEV G R S PV Sbjct: 135 CVSLAAMLGIGDSSSDSKASARQELLRRMLIVRHNGQTTAFTADEVHGTLRVAASARQPV 194 Query: 175 PTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSM 213 PTTL +A +T +++W GH++GLLD ELLF+ L+RS+ Sbjct: 195 PTTLIRATGHFTDAVIQWNGHSVGLLDQELLFHTLDRSL 233 >ref|ZP_03129653.1| CheW protein [Chthoniobacter flavus Ellin428] gb|EDY19642.1| CheW protein [Chthoniobacter flavus Ellin428] Length = 219 Score = 181 bits (459), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 131/221 (59%), Gaps = 9/221 (4%) Query: 1 MAIDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDRVSLANDALPSWQEPASP 60 M + DCW +IG GD SCPQL + V C NCPT++ AA Q LDR A S E + Sbjct: 1 MKLHDCWKQIGTWGDKSCPQLAEAVHCRNCPTYSAAAAQLLDREVDATYLAQSALEIRTV 60 Query: 61 APAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRGAL 120 +A S +V RIG EW A+ + +V EV R +HSLPH+R+ +LG+ N+RGAL Sbjct: 61 RQT--VARDTDSAVVFRIGAEWLALPSHLVHEVGVLRPIHSLPHRRSATVLGIANVRGAL 118 Query: 121 RICVSLAQLFQFG------AAAPKALPPKLLVASHDGQTLVFPVDEVAGVHR-HDGSLGP 173 IC+SL L +A+ + +LLV H+G+ LV PVDEV GVHR H LG Sbjct: 119 LICISLHALLGIDKAPVVTSASRTLVHERLLVVGHEGERLVLPVDEVFGVHRFHAEQLGE 178 Query: 174 VPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSMT 214 P T+A++ YTR L WR +GLLD +LLFY +N+S++ Sbjct: 179 TPATVAKSTATYTRATLPWRDKTVGLLDEQLLFYSINKSLS 219 >ref|YP_002909271.1| chemotaxis protein cheW [Burkholderia glumae BGR1] gb|ACR32036.1| Chemotaxis protein cheW [Burkholderia glumae BGR1] Length = 241 Score = 181 bits (458), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 101/224 (45%), Positives = 135/224 (60%), Gaps = 12/224 (5%) Query: 2 AIDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDRVSLANDALPSWQ---EPA 58 AIDDCWNRIG++GD SC +L + RCLNCP FAR A + LDR A+D + Q EP Sbjct: 17 AIDDCWNRIGVRGDHSCERLSEVSRCLNCPVFARNAARLLDRPLSADDLAQAAQRVSEPV 76 Query: 59 SP--APAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNI 116 +P A R SVL R+ EW A+ T VV+++ + R VHSLP +R A+LG++N+ Sbjct: 77 APEFGRTGPEAGARQSVLAFRVADEWLALPTEVVRQIVDDRPVHSLPDRRARAVLGIVNV 136 Query: 117 RGALRICVSLAQLFQFGAAAPKALPP------KLLVASHDGQTLVFPVDEVAGVHRHDGS 170 RG LRI VSLA+L AP+A ++LV +H G+ +VFPVD V GV R + Sbjct: 137 RGTLRIAVSLAELLGLETGAPRAAGDARAGFRRMLVVAHRGEPVVFPVDAVEGVLRFGAA 196 Query: 171 -LGPVPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSM 213 P T+A+A +TRG+ WR +GL+D E LF L RS+ Sbjct: 197 DRAATPATVARAGSAHTRGVFVWRERIVGLIDEERLFESLLRSL 240 >ref|YP_004350163.1| Chemotaxis protein cheW [Burkholderia gladioli BSR3] gb|AEA64651.1| Chemotaxis protein cheW [Burkholderia gladioli BSR3] Length = 234 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/221 (46%), Positives = 138/221 (62%), Gaps = 9/221 (4%) Query: 2 AIDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDRVSLAND-ALPSWQEPASP 60 AIDDCWNRIG++GD SC +L + RCLNCP FAR A LDR D A + + ASP Sbjct: 13 AIDDCWNRIGVRGDQSCERLAEVQRCLNCPVFARHAAHLLDRPLSGEDLAQAARRVAASP 72 Query: 61 APAAELAAGRS-SVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRGA 119 A A G SVL R+ EW A+ T+ V+++ + R +HSLP +R+ A+LGV+N+RG Sbjct: 73 AAATPGEHGEGQSVLAFRVADEWLALPTSTVRQIVDDRPIHSLPDRRSRAVLGVVNVRGT 132 Query: 120 LRICVSLAQLFQFGAAA------PKALPPKLLVASHDGQTLVFPVDEVAGVHRHDGSLG- 172 LRI VSLA+L AAA P+A ++LV +H G+ +VFPVDEV GV R + Sbjct: 133 LRIAVSLARLLDLDAAAGRAAEGPRAAFTRMLVVAHRGEPVVFPVDEVEGVLRFAAADRV 192 Query: 173 PVPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSM 213 P P T+++A + +TR + WR +GLLD + LF L RS+ Sbjct: 193 PPPATVSRAGMTHTRCVFGWRERVVGLLDEDRLFDSLLRSL 233 >ref|YP_001861516.1| CheW protein [Burkholderia phymatum STM815] gb|ACC74470.1| CheW protein [Burkholderia phymatum STM815] Length = 233 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 103/220 (46%), Positives = 134/220 (60%), Gaps = 11/220 (5%) Query: 3 IDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDRVSLANDALPSWQ--EPASP 60 IDDCWNRIG +GD +CP+L + RCLNCP FA+ A + LDR D P E + Sbjct: 15 IDDCWNRIGTRGDNTCPRLADYSRCLNCPVFAQRAARLLDRPLSDADVAPRRHAGEVSGV 74 Query: 61 APAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRGAL 120 APA + A S L RI EW A+ T V++EV R +HSLPHQR+ A+LG++N+RGAL Sbjct: 75 APAEDTAT--DSALAFRIAGEWLALPTRVLREVDAIRAIHSLPHQRSRAVLGIVNVRGAL 132 Query: 121 RICVSLAQLFQFGAAA-----PKALPPKLLVASHDGQTLV-FPVDEVAGVHRH-DGSLGP 173 + VSL +L AA + ++LVA+HD + V FPVDEV GV R+ D +L P Sbjct: 133 TLAVSLGELLNMEPAAHAQAVARNGHARMLVAAHDSEPPVAFPVDEVEGVIRYADATLLP 192 Query: 174 VPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSM 213 VP TLA A + RG+ WR AIG+LD LF + RS+ Sbjct: 193 VPATLAHATASHARGVQVWRDQAIGVLDPARLFDSIARSL 232 >ref|YP_438704.1| chemotaxis protein cheW [Burkholderia thailandensis E264] ref|ZP_02383848.1| chemotaxis protein cheW [Burkholderia thailandensis Bt4] ref|ZP_05590039.1| chemotaxis protein cheW [Burkholderia thailandensis E264] gb|ABC36141.1| chemotaxis protein cheW [Burkholderia thailandensis E264] Length = 239 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/224 (44%), Positives = 131/224 (58%), Gaps = 13/224 (5%) Query: 3 IDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDR------VSLANDALPSWQE 56 ID CWNRIG +GD SC +L RCLNCP F R A LDR ++ A Sbjct: 15 IDACWNRIGTRGDRSCERLDTCQRCLNCPVFERHAALLLDRPLTDADLADAARLAAERAL 74 Query: 57 PASPAPAAELAAGRS--SVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVL 114 A+PAPAA + S L R+ EW A+ V++E+ + R +H LPH+RN A+LG++ Sbjct: 75 RANPAPAARDGEAETVHSALAFRVADEWLALPIRVLREITDTRSIHPLPHRRNRAVLGIV 134 Query: 115 NIRGALRICVSLAQLFQFGAAAPKALP----PKLLVASHDGQTLVFPVDEVAGVHRHD-G 169 N+RG LR+ VSLA+L A A +A P ++LV +H G +VFPVDEV GV R Sbjct: 135 NVRGMLRVAVSLAELLSLDARADRAAPRTSFTRMLVVAHRGDPVVFPVDEVEGVLRFTPA 194 Query: 170 SLGPVPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSM 213 PVP T+A+A ++RG+ WRG IGLLD E LF L RS+ Sbjct: 195 DWMPVPATVARAGAVHSRGVFAWRGKTIGLLDEERLFDSLTRSL 238 >ref|YP_624427.1| CheW protein [Burkholderia cenocepacia AU 1054] ref|YP_837420.1| CheW protein [Burkholderia cenocepacia HI2424] ref|YP_001777376.1| CheW protein [Burkholderia cenocepacia MC0-3] gb|ABF79454.1| CheW protein [Burkholderia cenocepacia AU 1054] gb|ABK10527.1| CheW protein [Burkholderia cenocepacia HI2424] gb|ACA92886.1| CheW protein [Burkholderia cenocepacia MC0-3] Length = 233 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 132/222 (59%), Gaps = 9/222 (4%) Query: 1 MAIDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDR---VSLANDALPSWQEP 57 + +DDCWNRIG +GD SC +L +RCLNCP +A A + L+R V+ D Sbjct: 11 LDVDDCWNRIGTRGDRSCERLNDCLRCLNCPVYASNAAKLLERPLDVAEMTDVTRRMSAF 70 Query: 58 ASPAPAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIR 117 + + + R + L R+ EW A+ V++E+A R +HSLPH+RN A+ GV+NIR Sbjct: 71 GTAHASDDDGVARHAALAFRVADEWLALPIGVLREIAGTRPIHSLPHRRNSAVRGVVNIR 130 Query: 118 GALRICVSLAQLF-----QFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRHDGS-L 171 G LRI +S+ L + G+ + +LLVA+H G+ +VFPVDEV GV R S Sbjct: 131 GTLRIAISIGALLGLDAGKAGSGSDDGRFTRLLVAAHQGEPVVFPVDEVEGVLRFGASDW 190 Query: 172 GPVPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSM 213 PVP T+ +A+ +RG+L WRG ++GLLD + LF + RSM Sbjct: 191 VPVPATVGRASAGLSRGVLSWRGKSVGLLDDDRLFDAVTRSM 232 >ref|ZP_04942183.1| Chemotaxis signal transduction protein [Burkholderia cenocepacia PC184] gb|EAY65354.1| Chemotaxis signal transduction protein [Burkholderia cenocepacia PC184] Length = 231 Score = 174 bits (442), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 7/220 (3%) Query: 1 MAIDDCWNRIGIKGDGSCPQLQQHVRCLNCPTFARAAVQQLDR---VSLANDALPSWQEP 57 + +DDCWNRIG +GD SC +L +RCLNCP +A A + L+R V+ D Sbjct: 11 LDVDDCWNRIGTRGDRSCERLNDCLRCLNCPVYASNAAKLLERPLDVAEMTDVTRRMSAF 70 Query: 58 ASPAPAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIR 117 + + + R + L R+ EW A+ V++E+A R +HSLPH+RN A+ GV+NIR Sbjct: 71 GTAHASDDDGVARHAALAFRVADEWLALPIGVLREIAGTRPIHSLPHRRNSAVRGVVNIR 130 Query: 118 GALRICVSLAQLFQFG---AAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRHDGS-LGP 173 G LRI +S+ L A + +LLVA+H G+ +VFPVDEV GV R S P Sbjct: 131 GTLRIAISIGALLGLDAGKAGSDDGRFTRLLVAAHQGEPVVFPVDEVEGVLRFGASDWVP 190 Query: 174 VPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSM 213 VP T+ +A+ +RG+L WRG ++GLLD + LF + RSM Sbjct: 191 VPATVGRASAGLSRGVLSWRGKSVGLLDDDRLFDAVTRSM 230