BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0176.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776384.1| flagellar transcription activator regulator ... 385 e-105 ref|YP_001099595.1| transcriptional activator FlhC [Herminiimona... 294 5e-78 ref|YP_001353791.1| transcriptional activator FlhC [Janthinobact... 287 5e-76 ref|ZP_08275668.1| Flagellar transcriptional activator flhC [Oxa... 271 2e-71 ref|YP_412001.1| transcriptional activator FlhC [Nitrosospira mu... 257 6e-67 ref|YP_003908614.1| flagellar transcriptional activator FlhC [Bu... 251 3e-65 ref|YP_004229893.1| flagellar transcriptional activator FlhC [Bu... 247 6e-64 ref|YP_109906.1| transcriptional activator FlhC [Burkholderia ps... 246 1e-63 ref|YP_002898701.1| transcriptional activator FlhC [Burkholderia... 246 1e-63 ref|YP_003050569.1| transcriptional activator FlhC [Methylovorus... 245 2e-63 >ref|YP_003776384.1| flagellar transcription activator regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64476.1| flagellar transcription activator regulator protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/186 (99%), Positives = 185/186 (99%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS Sbjct: 15 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM Sbjct: 75 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVVLGLDEAARPLAAPVAV 180 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVVLGL EAARPLAAPVAV Sbjct: 135 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVVLGLAEAARPLAAPVAV 194 Query: 181 PLAAVA 186 PLAAVA Sbjct: 195 PLAAVA 200 >ref|YP_001099595.1| transcriptional activator FlhC [Herminiimonas arsenicoxydans] emb|CAL61468.1| Flagellar transcriptional activator FlhC [Herminiimonas arsenicoxydans] Length = 182 Score = 294 bits (752), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 141/166 (84%), Positives = 152/166 (91%), Gaps = 1/166 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLESETSLSRERLLKLYKEL+GVSPPKGMLPFSTDWFITWQPNIHSS Sbjct: 15 LAIELIKLGARLQLLESETSLSRERLLKLYKELRGVSPPKGMLPFSTDWFITWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LFI IH+YL+EHA+ISGIEAVMKAYKLYLEQV + GEPVLSLTRAWTLVRFF+SKML Sbjct: 75 LFIGIHKYLIEHAQISGIEAVMKAYKLYLEQVDMGEDGEPVLSLTRAWTLVRFFDSKMLE 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAK-DAVVL 165 T C +CNGHFVVHRLDL+ +Y CGLCHMPSRAGKTK+AK DA +L Sbjct: 135 TACCSECNGHFVVHRLDLNANYTCGLCHMPSRAGKTKRAKMDANLL 180 >ref|YP_001353791.1| transcriptional activator FlhC [Janthinobacterium sp. Marseille] gb|ABR91027.1| FlhC flagellar transcriptional activator [Janthinobacterium sp. Marseille] Length = 181 Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 135/160 (84%), Positives = 147/160 (91%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELINLGARLQLLESETSLSRERLLKLYKEL+GVSPPKGMLPFSTDWFITWQPNIHSS Sbjct: 15 LAIELINLGARLQLLESETSLSRERLLKLYKELRGVSPPKGMLPFSTDWFITWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF+ IH+YL+EHA+ISGI+AVMKAYKLYLEQV GEPVLSLTRAWTLVRFF+SKML Sbjct: 75 LFMGIHKYLIEHAQISGIQAVMKAYKLYLEQVELGADGEPVLSLTRAWTLVRFFDSKMLA 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAK 160 T C +C G+FVVHRLDL+ +Y CGLCHMPSRAGKTK+AK Sbjct: 135 TACCSECGGNFVVHRLDLNANYTCGLCHMPSRAGKTKRAK 174 >ref|ZP_08275668.1| Flagellar transcriptional activator flhC [Oxalobacteraceae bacterium IMCC9480] gb|EGF30857.1| Flagellar transcriptional activator flhC [Oxalobacteraceae bacterium IMCC9480] Length = 184 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/158 (81%), Positives = 143/158 (90%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPN+HSS Sbjct: 15 LAIELIKLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNVHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LFINI+++L EHA I+GI AV+KAYKLYLEQ+G EPVLSLTRAWT+VRFF+SKML Sbjct: 75 LFINIYKFLQEHAHITGIVAVVKAYKLYLEQMGPEGDEEPVLSLTRAWTMVRFFDSKMLN 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKK 158 T C +C+GHFVVH+LDL+ Y+CGLCHMPSRAGKT+K Sbjct: 135 TACCTECSGHFVVHQLDLNAGYVCGLCHMPSRAGKTRK 172 >ref|YP_412001.1| transcriptional activator FlhC [Nitrosospira multiformis ATCC 25196] gb|ABB74609.1| Flagellar transcriptional activator FlhC [Nitrosospira multiformis ATCC 25196] Length = 181 Score = 257 bits (656), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 121/163 (74%), Positives = 138/163 (84%), Gaps = 1/163 (0%) Query: 2 AIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSSL 61 AIELI LGARLQLLESET+LSRERL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS+ Sbjct: 16 AIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFSTDWFLTWQPNIHSSV 75 Query: 62 FINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLMT 121 F +I+RYL+ H GI A++K+YKLYLE Q EP+LSLTRAWTLVRFFESK++ T Sbjct: 76 FADIYRYLIAHGDCRGISAIIKSYKLYLEHC-QVCEMEPILSLTRAWTLVRFFESKLMQT 134 Query: 122 TPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVV 164 T C +C GHFVVH DLH Y+CGLCHMPSRAGKT KA+ A+V Sbjct: 135 TACNQCGGHFVVHANDLHHRYVCGLCHMPSRAGKTNKARTAMV 177 >ref|YP_003908614.1| flagellar transcriptional activator FlhC [Burkholderia sp. CCGE1003] gb|ADN59323.1| flagellar transcriptional activator FlhC [Burkholderia sp. CCGE1003] Length = 186 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 116/162 (71%), Positives = 136/162 (83%), Gaps = 1/162 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ETSLSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPN HSS Sbjct: 15 LAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNFHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ +H R +GI++++K+Y+LYLE V +D EPVLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMADHGRCAGIQSIVKSYRLYLEHVQLHD-DEPVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDA 162 TPCC+C GHFV H D ++CGLC PSRAGKTKK DA Sbjct: 134 ITPCCRCGGHFVAHAHDPQHGFVCGLCQPPSRAGKTKKVADA 175 >ref|YP_004229893.1| flagellar transcriptional activator FlhC [Burkholderia sp. CCGE1001] gb|ADX56833.1| flagellar transcriptional activator FlhC [Burkholderia sp. CCGE1001] Length = 186 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 115/162 (70%), Positives = 135/162 (83%), Gaps = 1/162 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ETSLSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPN HSS Sbjct: 15 LAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNFHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ +H + I++++K+Y+LYLE + Q A EPVLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMADHGGCATIQSIVKSYRLYLEHM-QLHADEPVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDA 162 TPCC+C GHFV H D Q ++CGLC PSRAGKTKK DA Sbjct: 134 ITPCCRCGGHFVAHAHDPKQGFVCGLCQPPSRAGKTKKVADA 175 >ref|YP_109906.1| transcriptional activator FlhC [Burkholderia pseudomallei K96243] ref|YP_104373.1| transcriptional activator FlhC [Burkholderia mallei ATCC 23344] ref|YP_331498.1| transcriptional activator FlhC [Burkholderia pseudomallei 1710b] ref|YP_994717.1| transcriptional activator FlhC [Burkholderia mallei SAVP1] ref|YP_001027660.1| transcriptional activator FlhC [Burkholderia mallei NCTC 10229] ref|YP_001060853.1| transcriptional activator FlhC [Burkholderia pseudomallei 668] ref|YP_001082631.1| transcriptional activator FlhC [Burkholderia mallei NCTC 10247] ref|YP_001068160.1| transcriptional activator FlhC [Burkholderia pseudomallei 1106a] ref|ZP_01768290.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 305] ref|ZP_03455506.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 576] ref|ZP_00439270.2| flagellar transcriptional activator FlhC [Burkholderia mallei GB8 horse 4] ref|ZP_04814598.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1106b] ref|ZP_02266221.2| flagellar transcriptional activator FlhC [Burkholderia mallei PRL-20] ref|ZP_04881905.1| flagellar transcriptional activator FlhC [Burkholderia mallei ATCC 10399] ref|ZP_04890483.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1655] ref|ZP_04892885.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04901120.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei S13] ref|ZP_04907810.1| flagellar transcriptional activator FlhC [Burkholderia mallei FMH] ref|ZP_04913139.1| flagellar transcriptional activator FlhC [Burkholderia mallei JHU] ref|ZP_04948985.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1710a] ref|ZP_04966240.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 406e] ref|ZP_04973463.1| flagellar transcriptional activator FlhC [Burkholderia mallei 2002721280] emb|CAH37323.1| flagellar regulon master regulator subunit FlhC [Burkholderia pseudomallei K96243] gb|AAU48341.1| flagellar transcriptional activator FlhC [Burkholderia mallei ATCC 23344] gb|ABA49236.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1710b] gb|ABM52920.1| flagellar transcriptional activator FlhC [Burkholderia mallei SAVP1] gb|ABN01840.1| flagellar transcriptional activator FlhC [Burkholderia mallei NCTC 10229] gb|ABN81393.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 668] gb|ABN92210.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1106a] gb|ABO04203.1| flagellar transcriptional activator FlhC [Burkholderia mallei NCTC 10247] gb|EBA47335.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 305] gb|EDK54416.1| flagellar transcriptional activator FlhC [Burkholderia mallei FMH] gb|EDK59396.1| flagellar transcriptional activator FlhC [Burkholderia mallei JHU] gb|EDK84338.1| flagellar transcriptional activator FlhC [Burkholderia mallei 2002721280] gb|EDO85841.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 406e] gb|EDO89723.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei Pasteur 52237] gb|EDP86259.1| flagellar transcriptional activator FlhC [Burkholderia mallei ATCC 10399] gb|EDS84132.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei S13] gb|EDU11467.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1655] gb|EEC33091.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 576] gb|EEP84634.1| flagellar transcriptional activator FlhC [Burkholderia mallei GB8 horse 4] gb|EES25223.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1106b] gb|EES45788.1| flagellar transcriptional activator FlhC [Burkholderia mallei PRL-20] gb|EET06004.1| flagellar transcriptional activator FlhC [Burkholderia pseudomallei 1710a] Length = 183 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 133/159 (83%), Gaps = 1/159 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ET+LSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS Sbjct: 15 LAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ EH I++++KAY+LYLE VG +D E VLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSD-DEAVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKA 159 TPC +C GHFV H D H Y+CGLC PSRAGKT+KA Sbjct: 134 MTPCTRCGGHFVAHAHDPHHGYVCGLCQPPSRAGKTRKA 172 >ref|YP_002898701.1| transcriptional activator FlhC [Burkholderia pseudomallei MSHR346] gb|ACQ97065.1| transcriptional activator FlhC [Burkholderia pseudomallei MSHR346] Length = 183 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 133/159 (83%), Gaps = 1/159 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ET+LSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS Sbjct: 15 LAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ EH I++++KAY+LYLE VG +D E VLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSD-DEAVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKA 159 TPC +C GHFV H D H Y+CGLC PSRAGKT+KA Sbjct: 134 MTPCTRCGGHFVAHAHDPHHGYVCGLCQPPSRAGKTRKA 172 >ref|YP_003050569.1| transcriptional activator FlhC [Methylovorus glucosetrophus SIP3-4] ref|YP_004039250.1| flagellar transcriptional activator flhc [Methylovorus sp. MP688] gb|ACT50042.1| flagellar transcriptional activator FlhC [Methylovorus glucosetrophus SIP3-4] gb|ADQ84014.1| flagellar transcriptional activator FlhC [Methylovorus sp. MP688] Length = 179 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 112/161 (69%), Positives = 134/161 (83%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAI+LI LGARLQLLES+T+LSRERL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS Sbjct: 15 LAIQLITLGARLQLLESQTTLSRERLIKLYKELKGVSPPKGMLPFSTDWFLTWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 +F+NI+ ++ EH ++GI AV+KAY+LYL++ G D VLSLTRAWTLVRF ESKML Sbjct: 75 MFLNIYNFMREHTDVNGITAVIKAYQLYLDETGTEDPETAVLSLTRAWTLVRFVESKMLK 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKD 161 C C GHFVV+ DL+Q + C LCH+PSRAGKTKK ++ Sbjct: 135 LQACSCCGGHFVVNVYDLNQHFACSLCHVPSRAGKTKKTRE 175