BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0169.p (168 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776377.1| CheW chemotaxis protein [Herbaspirillum sero... 334 2e-90 ref|ZP_08273448.1| Positive regulator of CheA protein activity (... 284 3e-75 ref|YP_001353784.1| CheW purine-binding chemotaxis protein [Jant... 280 8e-74 ref|YP_001099602.1| purine-binding chemotaxis protein [Herminiim... 271 2e-71 ref|YP_315381.1| CheW protein [Thiobacillus denitrificans ATCC 2... 268 2e-70 ref|YP_001101319.1| purine-binding chemotaxis protein [Herminiim... 259 7e-68 ref|YP_001354517.1| purine-binding chemotaxis protein CheW [Jant... 253 6e-66 ref|YP_002946066.1| CheW protein [Variovorax paradoxus S110] >gi... 253 6e-66 ref|YP_001100832.1| purine-binding chemotaxis protein [Herminiim... 252 2e-65 ref|YP_002946069.1| CheW protein [Variovorax paradoxus S110] >gi... 251 3e-65 >ref|YP_003776377.1| CheW chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64469.1| CheW chemotaxis protein, positive regulator of CheA protein activity [Herbaspirillum seropedicae SmR1] Length = 168 Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 168/168 (100%), Positives = 168/168 (100%) Query: 1 MSDTASKNLSGFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIK 60 MSDTASKNLSGFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIK Sbjct: 1 MSDTASKNLSGFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIK 60 Query: 61 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQI 120 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQI Sbjct: 61 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQI 120 Query: 121 KPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 KPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA Sbjct: 121 KPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 >ref|ZP_08273448.1| Positive regulator of CheA protein activity (CheW) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33082.1| Positive regulator of CheA protein activity (CheW) [Oxalobacteraceae bacterium IMCC9480] Length = 170 Score = 284 bits (726), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 141/170 (82%), Positives = 154/170 (90%), Gaps = 2/170 (1%) Query: 1 MSDTASKNLSGFGEKTDSN--GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDF 58 MS+ A N G K + GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIAN+P+F Sbjct: 1 MSEAAQINAQVLGAKATAEIAGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEF 60 Query: 59 IKGVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQE 118 +KGVVNLRGIIVPIVDMRIKF LGEPTYDQFTVVIILNIGGRV+GMVVDSVSDVITL+ E Sbjct: 61 VKGVVNLRGIIVPIVDMRIKFNLGEPTYDQFTVVIILNIGGRVMGMVVDSVSDVITLSAE 120 Query: 119 QIKPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 QIKPAPEMGT F++DYLIGLGTL++RMLIL+DIDKLMSSAEMGLIEK+AA Sbjct: 121 QIKPAPEMGTAFNTDYLIGLGTLDERMLILIDIDKLMSSAEMGLIEKIAA 170 >ref|YP_001353784.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89007.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] Length = 163 Score = 280 bits (715), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 137/150 (91%), Positives = 147/150 (98%) Query: 19 NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIK 78 NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIAN+P+F+KGVVNLRGIIVPIVDMRIK Sbjct: 14 NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEFVKGVVNLRGIIVPIVDMRIK 73 Query: 79 FQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGL 138 F LGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITL+ EQIKPAPEMGT F++DYLIGL Sbjct: 74 FNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLSPEQIKPAPEMGTAFNTDYLIGL 133 Query: 139 GTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 GTL++RMLILVDIDKLMSS+EMGLIEK+AA Sbjct: 134 GTLDERMLILVDIDKLMSSSEMGLIEKIAA 163 >ref|YP_001099602.1| purine-binding chemotaxis protein [Herminiimonas arsenicoxydans] emb|CAL61475.1| Chemotaxis protein CheW [Herminiimonas arsenicoxydans] Length = 163 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 136/156 (87%), Positives = 146/156 (93%), Gaps = 3/156 (1%) Query: 13 GEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPI 72 G KT GNEFLAFTLG+EEYGIDILKVQEIRGYE VTRIAN+P+F+KGVVNLRGIIVPI Sbjct: 11 GAKT---GNEFLAFTLGREEYGIDILKVQEIRGYETVTRIANAPEFVKGVVNLRGIIVPI 67 Query: 73 VDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDS 132 VDMRIKF LGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITL+ EQIKPAPEMGT F++ Sbjct: 68 VDMRIKFNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLSPEQIKPAPEMGTAFNT 127 Query: 133 DYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 DYLIGLGTL++RMLILVDIDKLMSS EMGLIE +AA Sbjct: 128 DYLIGLGTLDERMLILVDIDKLMSSEEMGLIENIAA 163 >ref|YP_315381.1| CheW protein [Thiobacillus denitrificans ATCC 25259] gb|AAZ97576.1| CheW protein [Thiobacillus denitrificans ATCC 25259] Length = 167 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 130/154 (84%), Positives = 145/154 (94%) Query: 15 KTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVD 74 + + +GNE+LAFTLG+EEYGIDIL+VQEIRGYE VTRIAN+P FIKGVVNLRG IVP+VD Sbjct: 14 EAEGDGNEYLAFTLGREEYGIDILRVQEIRGYEPVTRIANAPAFIKGVVNLRGTIVPVVD 73 Query: 75 MRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDY 134 MRIKF LGEPTYDQFTVVIILNIGGRVVGMVVDSVSDV+TL EQ+KPAPE+GTTFD+DY Sbjct: 74 MRIKFNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVMTLAPEQVKPAPEIGTTFDTDY 133 Query: 135 LIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 LIGLGTL+ RMLILVDIDKLMSS+EMGLI+KLAA Sbjct: 134 LIGLGTLDDRMLILVDIDKLMSSSEMGLIDKLAA 167 >ref|YP_001101319.1| purine-binding chemotaxis protein [Herminiimonas arsenicoxydans] emb|CAL63198.1| Chemotaxis protein CheW [Herminiimonas arsenicoxydans] Length = 158 Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 126/150 (84%), Positives = 142/150 (94%) Query: 19 NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIK 78 +GNE LAFTLG+EEYGIDILKVQEIRGY+AVT+IAN+P+FIKGV+NLRG+IVPIVDMRI Sbjct: 9 SGNEVLAFTLGREEYGIDILKVQEIRGYDAVTKIANAPEFIKGVINLRGVIVPIVDMRIM 68 Query: 79 FQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGL 138 F LGEP+YDQFTVVIILNIG RVVGMVVDSVSDVITL+ EQIKPAPEMG+T SDYL+GL Sbjct: 69 FNLGEPSYDQFTVVIILNIGTRVVGMVVDSVSDVITLSAEQIKPAPEMGSTMKSDYLLGL 128 Query: 139 GTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 GT+E+RMLILVDID LMSS+EMGLIEK+AA Sbjct: 129 GTIEERMLILVDIDLLMSSSEMGLIEKIAA 158 >ref|YP_001354517.1| purine-binding chemotaxis protein CheW [Janthinobacterium sp. Marseille] gb|ABR90100.1| purine-binding chemotaxis protein CheW [Janthinobacterium sp. Marseille] Length = 158 Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 124/149 (83%), Positives = 140/149 (93%) Query: 20 GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKF 79 G E LAFTLG EEYGIDILKVQEIRGY+AVT+IAN+P+FIKGV+NLRGIIVPIVDMRI F Sbjct: 10 GTEVLAFTLGSEEYGIDILKVQEIRGYDAVTKIANAPEFIKGVINLRGIIVPIVDMRIMF 69 Query: 80 QLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGLG 139 +LG PTYDQFTVVIILNIG RVVG+VVDSVSDVITL EQIKPAPEMGT+ ++D+LIGLG Sbjct: 70 KLGAPTYDQFTVVIILNIGNRVVGIVVDSVSDVITLNGEQIKPAPEMGTSMNADFLIGLG 129 Query: 140 TLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 T+E+RMLIL+DIDKLMSS+EMGL+EKLAA Sbjct: 130 TIEERMLILLDIDKLMSSSEMGLMEKLAA 158 >ref|YP_002946066.1| CheW protein [Variovorax paradoxus S110] gb|ACS20800.1| CheW protein [Variovorax paradoxus S110] Length = 171 Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 121/147 (82%), Positives = 140/147 (95%) Query: 22 EFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKFQL 81 EFL+FTLG+EEYGIDI KVQE+RGY+AVTRIAN+P++IKGVVNLRGIIVPI+DMRIKF+L Sbjct: 25 EFLSFTLGQEEYGIDIQKVQELRGYDAVTRIANAPEYIKGVVNLRGIIVPIIDMRIKFRL 84 Query: 82 GEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGLGTL 141 G P+YDQFTVVI+LNI GRVVGMVVDSVSDVITL+ EQIKPAPEMG+ D+DYLIGLGTL Sbjct: 85 GTPSYDQFTVVIVLNIAGRVVGMVVDSVSDVITLSAEQIKPAPEMGSVLDTDYLIGLGTL 144 Query: 142 EQRMLILVDIDKLMSSAEMGLIEKLAA 168 ++RMLILVDID+LMSS EMGL+EK+AA Sbjct: 145 DERMLILVDIDRLMSSDEMGLVEKIAA 171 >ref|YP_001100832.1| purine-binding chemotaxis protein [Herminiimonas arsenicoxydans] emb|CAL62711.1| Chemotaxis protein CheW [Herminiimonas arsenicoxydans] Length = 158 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/147 (85%), Positives = 137/147 (93%) Query: 22 EFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKFQL 81 E LAFTLG EEYGIDILKVQEIRGY+AVT+IAN+P+FIKGV+NLRGIIVPIVDMRI F+L Sbjct: 12 EVLAFTLGSEEYGIDILKVQEIRGYDAVTQIANAPEFIKGVINLRGIIVPIVDMRIMFKL 71 Query: 82 GEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGLGTL 141 G P YDQFTVVIILNIG RVVGMVVDSVSDVITL EQIKPAPEMGT D+DYLIGLGT+ Sbjct: 72 GVPRYDQFTVVIILNIGNRVVGMVVDSVSDVITLNNEQIKPAPEMGTAMDTDYLIGLGTI 131 Query: 142 EQRMLILVDIDKLMSSAEMGLIEKLAA 168 E+RMLILVDIDKLMSS+EMGLIE++AA Sbjct: 132 EERMLILVDIDKLMSSSEMGLIEEIAA 158 >ref|YP_002946069.1| CheW protein [Variovorax paradoxus S110] gb|ACS20803.1| CheW protein [Variovorax paradoxus S110] Length = 169 Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 121/158 (76%), Positives = 141/158 (89%) Query: 11 GFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIV 70 G S+ E + FTLG+EEYGIDI KVQE+RGY+AVTRIAN+P++IKGVVNLRGIIV Sbjct: 12 GAAAPATSSRLEVVTFTLGQEEYGIDIQKVQELRGYDAVTRIANAPEYIKGVVNLRGIIV 71 Query: 71 PIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTF 130 PI+DMRIKF+LG P+YDQFTVVI+LNI GRVVGMVVDSVSDVITL+ EQIKPAPEMG+ Sbjct: 72 PIIDMRIKFRLGTPSYDQFTVVIVLNIAGRVVGMVVDSVSDVITLSAEQIKPAPEMGSVL 131 Query: 131 DSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 D+DYLIGLGTL++RMLILVDID+LMSS EMGL+EK+AA Sbjct: 132 DTDYLIGLGTLDERMLILVDIDRLMSSDEMGLVEKIAA 169