BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0159.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776368.1| succinate dehydrogenase Fe-S subunit [Herbas... 482 e-134 ref|YP_004752404.1| succinate dehydrogenase iron-sulfur protein ... 461 e-128 ref|YP_001353199.1| succinate dehydrogenase iron-sulfur subunit ... 444 e-123 ref|YP_001100056.1| succinate dehydrogenase iron-sulfur subunit ... 443 e-122 ref|ZP_08273495.1| Succinate dehydrogenase iron-sulfur protein [... 438 e-121 ref|NP_880996.1| succinate dehydrogenase iron-sulfur subunit [Bo... 436 e-120 ref|YP_003977685.1| succinate dehydrogenase iron-sulfur subunit ... 434 e-120 gb|EFV82445.1| succinate dehydrogenase iron-sulfur protein [Achr... 433 e-120 ref|ZP_06686503.1| succinate dehydrogenase iron-sulfur subunit [... 433 e-119 gb|EGP45058.1| succinate dehydrogenase iron-sulfur subunit [Achr... 431 e-119 >ref|YP_003776368.1| succinate dehydrogenase Fe-S subunit [Herbaspirillum seropedicae SmR1] emb|CAM32703.1| Succinate dehydrogenase Fe-S protein subunit protein [Herbaspirillum seropedicae] gb|ADJ64460.1| succinate dehydrogenase Fe-S subunit protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60 MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG Sbjct: 1 MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60 Query: 61 VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL Sbjct: 61 VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI Sbjct: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV Sbjct: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 >ref|YP_004752404.1| succinate dehydrogenase iron-sulfur protein [Collimonas fungivorans Ter331] gb|AEK61581.1| Succinate dehydrogenase iron-sulfur protein [Collimonas fungivorans Ter331] Length = 237 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/235 (94%), Positives = 230/235 (97%) Query: 2 TRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGV 61 +RTLKFKIYRYDPDKD KPYMQDLTVEL PTDKMLLDALQRIK+DVDDSLALRRSCREGV Sbjct: 3 SRTLKFKIYRYDPDKDAKPYMQDLTVELLPTDKMLLDALQRIKADVDDSLALRRSCREGV 62 Query: 62 CGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLI 121 CGSDAMNINGKNGLAC TNLNELTEPIVLKPLPGLPVIRDLIVDMT FFKQY+SIKP+LI Sbjct: 63 CGSDAMNINGKNGLACTTNLNELTEPIVLKPLPGLPVIRDLIVDMTQFFKQYESIKPFLI 122 Query: 122 NDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 181 ND+IPPEKERLQ+PEQREELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA Sbjct: 123 NDNIPPEKERLQTPEQREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 182 Query: 182 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPN AIGKIKELMVRR+V Sbjct: 183 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 237 >ref|YP_001353199.1| succinate dehydrogenase iron-sulfur subunit [Janthinobacterium sp. Marseille] gb|ABR89231.1| succinate dehydrogenase iron-sulfur protein [Janthinobacterium sp. Marseille] Length = 236 Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/236 (88%), Positives = 223/236 (94%) Query: 1 MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60 M RTL+ +IYRYDPDKD KPYMQD+TVEL DKMLLDALQRIK+ VDDSLALRRSCREG Sbjct: 1 MARTLRLQIYRYDPDKDAKPYMQDVTVELHDHDKMLLDALQRIKATVDDSLALRRSCREG 60 Query: 61 VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 VCGSDAMNINGKNGLAC TNLNELTEPIVL+PLPGLPVIRDLIVDMT FFKQYDSIKP+L Sbjct: 61 VCGSDAMNINGKNGLACTTNLNELTEPIVLRPLPGLPVIRDLIVDMTQFFKQYDSIKPFL 120 Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 IND+IPPEKERLQ+P +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI Sbjct: 121 INDTIPPEKERLQTPAEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 ADSRD ATGARLDNLEDPYRLFRC +IMNCVDVCPKGLNP +AIGKIKELMVRR+V Sbjct: 181 ADSRDHATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTRAIGKIKELMVRRAV 236 >ref|YP_001100056.1| succinate dehydrogenase iron-sulfur subunit [Herminiimonas arsenicoxydans] emb|CAL61931.1| succinate dehydrogenase (ubiquinone), Fe-S protein [Herminiimonas arsenicoxydans] Length = 236 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/236 (88%), Positives = 225/236 (95%) Query: 1 MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60 M RTL+ +IYRYDPDKD KPYMQD+TVEL DKMLLDALQRIK+DVDD+L+LRRSCREG Sbjct: 1 MARTLRLQIYRYDPDKDAKPYMQDVTVELHDHDKMLLDALQRIKADVDDTLSLRRSCREG 60 Query: 61 VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 VCGSDAMNINGKNGLAC TNLNELTEPIVL+PLPGLPVIRDLIVDMT FFKQYDSIKP+L Sbjct: 61 VCGSDAMNINGKNGLACTTNLNELTEPIVLRPLPGLPVIRDLIVDMTQFFKQYDSIKPFL 120 Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 IND+IPPEKERLQ+P +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI Sbjct: 121 INDTIPPEKERLQTPAEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 ADSRDEATGARLDNLEDPYRLFRC +IMNCVDVCPKGLNP +AIGKIKEL+VRR+V Sbjct: 181 ADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTRAIGKIKELLVRRAV 236 >ref|ZP_08273495.1| Succinate dehydrogenase iron-sulfur protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33036.1| Succinate dehydrogenase iron-sulfur protein [Oxalobacteraceae bacterium IMCC9480] Length = 236 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/236 (88%), Positives = 222/236 (94%) Query: 1 MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60 M RTL F+IYRYDPDKD KPYMQ LTVEL+ TDKMLLDALQRIK+DVDDSLALRRSCREG Sbjct: 1 MPRTLNFEIYRYDPDKDAKPYMQKLTVELQDTDKMLLDALQRIKADVDDSLALRRSCREG 60 Query: 61 VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 VCGSDAMNINGKNGLAC TNL EL +PIVL+PLPGLPVIRDLIVDMT FFKQY+SIKP+L Sbjct: 61 VCGSDAMNINGKNGLACTTNLKELKQPIVLRPLPGLPVIRDLIVDMTQFFKQYNSIKPFL 120 Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 IN +IPPEKERLQSP +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI Sbjct: 121 INTTIPPEKERLQSPTEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180 Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 AD+RDEAT RLDNLEDPYRLFRC SIMNCVDVCPKGLNPNKAIGKIKE+MVRR+V Sbjct: 181 ADTRDEATAERLDNLEDPYRLFRCHSIMNCVDVCPKGLNPNKAIGKIKEMMVRRAV 236 >ref|NP_880996.1| succinate dehydrogenase iron-sulfur subunit [Bordetella pertussis Tohama I] ref|NP_885395.1| succinate dehydrogenase iron-sulfur subunit [Bordetella parapertussis 12822] ref|NP_890214.1| succinate dehydrogenase iron-sulfur subunit [Bordetella bronchiseptica RB50] emb|CAE42632.1| succinate dehydrogenase iron-sulfur protein [Bordetella pertussis Tohama I] emb|CAE38512.1| succinate dehydrogenase iron-sulfur protein [Bordetella parapertussis] emb|CAE35652.1| succinate dehydrogenase iron-sulfur protein [Bordetella bronchiseptica RB50] gb|AEE67608.1| succinate dehydrogenase iron-sulfur subunit [Bordetella pertussis CS] Length = 238 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/234 (89%), Positives = 221/234 (94%) Query: 3 RTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVC 62 R +KF+IYRYDPDKD++PYMQ L VEL+PTDKMLLDAL RIK+DVDDSLALRRSCREGVC Sbjct: 5 RIVKFEIYRYDPDKDERPYMQKLEVELQPTDKMLLDALVRIKNDVDDSLALRRSCREGVC 64 Query: 63 GSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLIN 122 GSDAMNINGKNGLAC TNL EL EPIVLKPLPGLPVIRDLIVDMT+FF QY SI+PYLIN Sbjct: 65 GSDAMNINGKNGLACTTNLLELKEPIVLKPLPGLPVIRDLIVDMTHFFNQYHSIRPYLIN 124 Query: 123 DSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 182 D+ PPEKERLQSPE REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD Sbjct: 125 DTPPPEKERLQSPEAREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 184 Query: 183 SRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 SRDEATGARLDNLEDPYRLFRC +IMNCVDVCPKGLNP KAIGKIKELMVRR+V Sbjct: 185 SRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRTV 238 >ref|YP_003977685.1| succinate dehydrogenase iron-sulfur subunit [Achromobacter xylosoxidans A8] gb|ADP14970.1| succinate dehydrogenase iron-sulfur subunit [Achromobacter xylosoxidans A8] Length = 238 Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/234 (88%), Positives = 221/234 (94%) Query: 3 RTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVC 62 R +KF+IYRYDPDKD++PYMQ L VEL+PTDKMLLDAL RIK+DVDDSLALRRSCREGVC Sbjct: 5 RIVKFEIYRYDPDKDERPYMQKLEVELQPTDKMLLDALVRIKNDVDDSLALRRSCREGVC 64 Query: 63 GSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLIN 122 GSDAMNINGKNGLAC TNL EL EPIVL+PLPGLPVIRDLIVDMT+FF QY SI+PYLIN Sbjct: 65 GSDAMNINGKNGLACTTNLRELKEPIVLRPLPGLPVIRDLIVDMTHFFNQYHSIRPYLIN 124 Query: 123 DSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 182 D+ PPEKERLQSPE REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD Sbjct: 125 DTPPPEKERLQSPEAREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 184 Query: 183 SRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 SRDEATG+RLDNLEDPYRLFRC +IMNCVDVCPKGLNP KAIGKIKELMVRR+V Sbjct: 185 SRDEATGSRLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRTV 238 >gb|EFV82445.1| succinate dehydrogenase iron-sulfur protein [Achromobacter xylosoxidans C54] Length = 238 Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/234 (88%), Positives = 220/234 (94%) Query: 3 RTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVC 62 R +KF+IYRYDPDKD++PYMQ L VEL+PTDKMLLDAL RIK+DVDDSLALRRSCREGVC Sbjct: 5 RIVKFEIYRYDPDKDERPYMQKLEVELQPTDKMLLDALVRIKNDVDDSLALRRSCREGVC 64 Query: 63 GSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLIN 122 GSDAMNINGKNGLAC TNL EL EPIVL+PLPGLPVIRDLIVDMT+FF QY SI+PYLIN Sbjct: 65 GSDAMNINGKNGLACTTNLRELKEPIVLRPLPGLPVIRDLIVDMTHFFNQYHSIRPYLIN 124 Query: 123 DSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 182 D+ PPEKERLQSPE REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD Sbjct: 125 DTPPPEKERLQSPEAREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 184 Query: 183 SRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 SRDEATG RLDNLEDPYRLFRC +IMNCVDVCPKGLNP KAIGKIKELMVRR+V Sbjct: 185 SRDEATGERLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRTV 238 >ref|ZP_06686503.1| succinate dehydrogenase iron-sulfur subunit [Achromobacter piechaudii ATCC 43553] gb|EFF76588.1| succinate dehydrogenase iron-sulfur subunit [Achromobacter piechaudii ATCC 43553] Length = 238 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/234 (88%), Positives = 220/234 (94%) Query: 3 RTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVC 62 R +KF+IYRYDPDKD++PYMQ L VEL+PTDKMLLDAL RIK+DVDDSLALRRSCREGVC Sbjct: 5 RIVKFEIYRYDPDKDERPYMQKLDVELQPTDKMLLDALVRIKNDVDDSLALRRSCREGVC 64 Query: 63 GSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLIN 122 GSDAMNINGKNGLAC TNL EL EPIVL+PLPGLPVIRDLIVDMT+FF QY SI+PYLIN Sbjct: 65 GSDAMNINGKNGLACTTNLRELKEPIVLRPLPGLPVIRDLIVDMTHFFNQYHSIRPYLIN 124 Query: 123 DSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 182 D+ PPEKERLQSPE REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD Sbjct: 125 DAPPPEKERLQSPEAREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 184 Query: 183 SRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 SRDEATG RLDNLEDPYRLFRC +IMNCVDVCPKGLNP KAIGKIKELMVRR+V Sbjct: 185 SRDEATGERLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRTV 238 >gb|EGP45058.1| succinate dehydrogenase iron-sulfur subunit [Achromobacter xylosoxidans AXX-A] Length = 238 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/234 (88%), Positives = 219/234 (93%) Query: 3 RTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVC 62 R +KF+IYRYDPDKD++PYMQ L VEL+P DKMLLDAL RIK+DVDDSLALRRSCREGVC Sbjct: 5 RIVKFEIYRYDPDKDERPYMQKLEVELQPADKMLLDALVRIKNDVDDSLALRRSCREGVC 64 Query: 63 GSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLIN 122 GSDAMNINGKNGLAC TNL EL EPIVL+PLPGLPVIRDLIVDMT+FF QY SI+PYLIN Sbjct: 65 GSDAMNINGKNGLACTTNLRELKEPIVLRPLPGLPVIRDLIVDMTHFFNQYHSIRPYLIN 124 Query: 123 DSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 182 D+ PPEKERLQSPE REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD Sbjct: 125 DTPPPEKERLQSPEAREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIAD 184 Query: 183 SRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 SRDEATG RLDNLEDPYRLFRC +IMNCVDVCPKGLNP KAIGKIKELMVRR+V Sbjct: 185 SRDEATGERLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRTV 238