BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0144.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776355.1| RNA polymerase sigma S (sigma38) factor prot... 641 0.0 ref|YP_004752564.1| RNA polymerase sigma factor RpoS [Collimonas... 503 e-140 ref|YP_001353824.1| RNA polymerase sigma factor RpoS [Janthinoba... 480 e-133 ref|YP_001099559.1| RNA polymerase sigma factor RpoS [Herminiimo... 476 e-132 ref|ZP_08273157.1| RNA polymerase sigma factor RpoS [Oxalobacter... 455 e-126 gb|AAC38577.1| alternative RNA sigma factor RpoS [Ralstonia sola... 404 e-110 ref|YP_002981107.1| RNA polymerase sigma factor RpoS [Ralstonia ... 404 e-110 ref|ZP_07677056.1| RNA polymerase sigma factor RpoS [Ralstonia s... 404 e-110 ref|YP_001898631.1| RNA polymerase sigma factor RpoS [Ralstonia ... 404 e-110 ref|NP_519328.1| RNA polymerase sigma factor RpoS [Ralstonia sol... 403 e-110 >ref|YP_003776355.1| RNA polymerase sigma S (sigma38) factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ64447.1| RNA polymerase sigma S (sigma38) factor protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/319 (99%), Positives = 319/319 (100%) Query: 1 LDDSVDEIDEPEVIDGDAGEEVQEAAPAEGVDELKKVLAAELSTDTTQHYLNKIGAKPLL 60 LDDSVDEIDEPEVIDGDAGEEVQEAAPAEGVDELKKVLAAELSTDTTQHYLNKIGAKPLL Sbjct: 19 LDDSVDEIDEPEVIDGDAGEEVQEAAPAEGVDELKKVLAAELSTDTTQHYLNKIGAKPLL 78 Query: 61 TAAEELHFATQAKAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAI 120 TAAEELHFATQAKAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAI Sbjct: 79 TAAEELHFATQAKAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAI 138 Query: 121 DKFEPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRD 180 DKFEPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRD Sbjct: 139 DKFEPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRD 198 Query: 181 GRDASAEDIAHLVDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTR 240 GRDASAEDIAHLVDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTR Sbjct: 199 GRDASAEDIAHLVDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTR 258 Query: 241 AESQEMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEA 300 AESQEMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEA Sbjct: 259 AESQEMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEA 318 Query: 301 LVKLKRLLTSRGVGRDALF 319 L+KLKRLLTSRGVGRDALF Sbjct: 319 LIKLKRLLTSRGVGRDALF 337 >ref|YP_004752564.1| RNA polymerase sigma factor RpoS [Collimonas fungivorans Ter331] gb|AEK61741.1| RNA polymerase sigma factor RpoS [Collimonas fungivorans Ter331] Length = 341 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 240/286 (83%), Positives = 265/286 (92%) Query: 34 LKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLVVS 93 LKKVLAAELSTDTTQHYLN+IG +PLL+ EE+HFAT AK G F ARQKMIEHNLRLVVS Sbjct: 56 LKKVLAAELSTDTTQHYLNQIGTRPLLSVTEEVHFATLAKQGNFEARQKMIEHNLRLVVS 115 Query: 94 IAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQART 153 IAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQART Sbjct: 116 IAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQART 175 Query: 154 VRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVEEVQDVLALSEHAASL 213 VRLPVHMVRELNQILRAKYHLEAQ DG+DASAEDIAHLVDRPVE+VQDVLALSEHAASL Sbjct: 176 VRLPVHMVRELNQILRAKYHLEAQHHDGKDASAEDIAHLVDRPVEDVQDVLALSEHAASL 235 Query: 214 DTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGLDN 273 D PLD DP ASLMDLLPSA EE+PD+RAE QEM++L+R WL+ L++KQR V+ RRFGLDN Sbjct: 236 DAPLDQDPLASLMDLLPSATEENPDSRAEQQEMSILVRVWLEKLTDKQRNVIMRRFGLDN 295 Query: 274 DDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGVGRDALF 319 DDPSTLE+LA+E+G+TRERVRQ+QQEAL+KLKRLL ++GVG+D+ Sbjct: 296 DDPSTLEELAAEIGVTRERVRQIQQEALLKLKRLLGAKGVGKDSFL 341 >ref|YP_001353824.1| RNA polymerase sigma factor RpoS [Janthinobacterium sp. Marseille] gb|ABR89247.1| RNA polymerase nonessential primary-like sigma factor [Janthinobacterium sp. Marseille] Length = 345 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 235/307 (76%), Positives = 259/307 (84%), Gaps = 2/307 (0%) Query: 15 DGDAGEEVQEAAPAE--GVDELKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQA 72 DGDA E + AP E G+DELKKVLA ELSTD TQHYLN+IG +PLLT EE+HFAT A Sbjct: 39 DGDAVELAERVAPVEVAGIDELKKVLATELSTDATQHYLNQIGTRPLLTVPEEVHFATLA 98 Query: 73 KAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFS 132 K G F ARQKMIEHNLRLVVSIAKHYINRGV LLDLIEEGNLGLMRAIDKFEPERGFRFS Sbjct: 99 KQGNFAARQKMIEHNLRLVVSIAKHYINRGVILLDLIEEGNLGLMRAIDKFEPERGFRFS 158 Query: 133 TYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHL 192 TYATWWIRQSIERAIMNQARTVRLPVH+VRELNQ LRAK+HLEAQ DG+DA+AEDIAHL Sbjct: 159 TYATWWIRQSIERAIMNQARTVRLPVHVVRELNQTLRAKFHLEAQHHDGKDATAEDIAHL 218 Query: 193 VDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIRE 252 VDR VE+VQD+LALSEHA SLD PLD DPQ+SLMDLL PD AE EM VL+ + Sbjct: 219 VDRSVEDVQDILALSEHATSLDAPLDGDPQSSLMDLLQGDHANDPDALAEHNEMTVLVHD 278 Query: 253 WLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRG 312 WL+ L +KQR+V+ RRFGLDNDDP+TLE LA+EM +TRERVRQ+QQEALVKLKR L G Sbjct: 279 WLEKLPDKQRLVITRRFGLDNDDPATLEALAAEMHVTRERVRQIQQEALVKLKRSLMRTG 338 Query: 313 VGRDALF 319 VG+D+L Sbjct: 339 VGKDSLL 345 >ref|YP_001099559.1| RNA polymerase sigma factor RpoS [Herminiimonas arsenicoxydans] emb|CAL61432.1| RNA polymerase sigma factor rpoS (Sigma-38) [Herminiimonas arsenicoxydans] Length = 344 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/296 (77%), Positives = 257/296 (86%) Query: 24 EAAPAEGVDELKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKM 83 EA G+DELKKVL++ELSTD TQHYLN+IGA+PLLT EE+HFAT AK G F ARQKM Sbjct: 49 EALEVAGIDELKKVLSSELSTDATQHYLNQIGARPLLTVPEEVHFATLAKQGNFAARQKM 108 Query: 84 IEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSI 143 IEHNLRLVVSIAKHYINRGV LLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSI Sbjct: 109 IEHNLRLVVSIAKHYINRGVVLLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSI 168 Query: 144 ERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVEEVQDV 203 ERAIMNQARTVRLPVH+VRELNQ LRAK+HLEAQ DG+DA+AEDIAHLV+R VE+VQD+ Sbjct: 169 ERAIMNQARTVRLPVHVVRELNQTLRAKFHLEAQHHDGKDATAEDIAHLVERSVEDVQDI 228 Query: 204 LALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRV 263 LALSEHA+SLD PLD DPQ+SLMDLL PD AE QEM VL+R+WL LS+KQR+ Sbjct: 229 LALSEHASSLDAPLDGDPQSSLMDLLQGDHANDPDVLAEHQEMIVLVRDWLDKLSDKQRL 288 Query: 264 VVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGVGRDALF 319 V+ RRFGLDNDDP+TLE+LA+EM +TRERVRQ+QQEALVKLKR L GV +D+L Sbjct: 289 VITRRFGLDNDDPATLEELATEMHVTRERVRQIQQEALVKLKRSLARTGVSKDSLL 344 >ref|ZP_08273157.1| RNA polymerase sigma factor RpoS [Oxalobacteraceae bacterium IMCC9480] gb|EGF33384.1| RNA polymerase sigma factor RpoS [Oxalobacteraceae bacterium IMCC9480] Length = 334 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/306 (72%), Positives = 260/306 (84%), Gaps = 1/306 (0%) Query: 15 DGDAGEEVQEAAP-AEGVDELKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAK 73 DGDA + A + +D+++KVLA+ELSTDTTQ YLN+IGA+ LLT A+E+H+AT AK Sbjct: 29 DGDADNDSAGATVLVDSIDDIRKVLASELSTDTTQLYLNQIGARALLTVAQEVHYATLAK 88 Query: 74 AGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFST 133 AG+F ARQ MIEHNLRLVVSIAKHYINRGV LLDLIEEGNLGLMRAIDKFEPERGFRFST Sbjct: 89 AGDFPARQVMIEHNLRLVVSIAKHYINRGVVLLDLIEEGNLGLMRAIDKFEPERGFRFST 148 Query: 134 YATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLV 193 YATWWIRQSIERAIMNQARTVRLPVH++RELNQ+LRAKYHLEA DG+DAS +DIAHL Sbjct: 149 YATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKYHLEALHHDGKDASIDDIAHLT 208 Query: 194 DRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREW 253 R E+VQD+LALS+H ASLD PLD DP +SLMDLLP + P+ RAE E A+L+R+W Sbjct: 209 GRSAEDVQDILALSDHPASLDAPLDADPGSSLMDLLPGDPGDGPEARAEQHETALLVRDW 268 Query: 254 LKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGV 313 L LS+KQR+++ RRFGL++DDP+TLE LA+E+G+TRERVRQVQQEAL+KLKR L +RGV Sbjct: 269 LARLSDKQRLIITRRFGLEDDDPATLEALAAEIGVTRERVRQVQQEALIKLKRALATRGV 328 Query: 314 GRDALF 319 RDAL Sbjct: 329 DRDALL 334 >gb|AAC38577.1| alternative RNA sigma factor RpoS [Ralstonia solanacearum] Length = 376 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/286 (69%), Positives = 231/286 (80%) Query: 34 LKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLVVS 93 + VL AEL+ DT QHYLN+I KPLLT AEELHF+T+AKAGEF ARQ MIE NLRLVVS Sbjct: 91 FRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTRAKAGEFAARQVMIERNLRLVVS 150 Query: 94 IAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQART 153 IAK Y+NRGV LLDLIEEGNLGLM AI+KF+PERGFRFSTYATWWIRQSIERAIMNQART Sbjct: 151 IAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQART 210 Query: 154 VRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVEEVQDVLALSEHAASL 213 VRLPVH++RELNQ+LRAK HLE DGRDAS EDIAHL+ + EEVQDVL+L+EH SL Sbjct: 211 VRLPVHVIRELNQVLRAKRHLEKSGIDGRDASIEDIAHLLGKTTEEVQDVLSLNEHTTSL 270 Query: 214 DTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGLDN 273 DTP D DP SL+D L PD +E++ L++ WL LS+K R VV RRFGL++ Sbjct: 271 DTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRYVVERRFGLNH 330 Query: 274 DDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGVGRDALF 319 +P+TLE+LA+EMG+TRERVRQ+QQEALVKLKR S+GV +DA+ Sbjct: 331 IEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL 376 >ref|YP_002981107.1| RNA polymerase sigma factor RpoS [Ralstonia pickettii 12D] gb|ACS62435.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ralstonia pickettii 12D] Length = 378 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/286 (69%), Positives = 230/286 (80%) Query: 34 LKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLVVS 93 +KVL AEL+ DT QHYLN+I KPLLT AEELHF+T AKAGEF ARQ MIE NLRLVVS Sbjct: 93 FRKVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVS 152 Query: 94 IAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQART 153 IAK Y+NRGV LLDLIEEGNLGLM AI+KF+PERGFRFSTYATWWIRQSIERAIMNQART Sbjct: 153 IAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQART 212 Query: 154 VRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVEEVQDVLALSEHAASL 213 VRLPVH++RELNQ+LRAK HLE DGRDAS EDIAHL+ + EEVQDVL+L+EH SL Sbjct: 213 VRLPVHVIRELNQVLRAKRHLEKSGVDGRDASLEDIAHLLGKTTEEVQDVLSLNEHTTSL 272 Query: 214 DTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGLDN 273 DTP D DP SL+D L PD +E++ L++ WL LS+K R VV RRFGL+ Sbjct: 273 DTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRYVVERRFGLNY 332 Query: 274 DDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGVGRDALF 319 +P+TLE+LA+EMG+TRERVRQ+QQEALVKLKR S+GV +DA+ Sbjct: 333 IEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL 378 >ref|ZP_07677056.1| RNA polymerase sigma factor RpoS [Ralstonia sp. 5_7_47FAA] gb|EFP64617.1| RNA polymerase sigma factor RpoS [Ralstonia sp. 5_7_47FAA] Length = 378 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/286 (69%), Positives = 230/286 (80%) Query: 34 LKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLVVS 93 +KVL AEL+ DT QHYLN+I KPLLT AEELHF+T AKAGEF ARQ MIE NLRLVVS Sbjct: 93 FRKVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVS 152 Query: 94 IAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQART 153 IAK Y+NRGV LLDLIEEGNLGLM AI+KF+PERGFRFSTYATWWIRQSIERAIMNQART Sbjct: 153 IAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQART 212 Query: 154 VRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVEEVQDVLALSEHAASL 213 VRLPVH++RELNQ+LRAK HLE DGRDAS EDIAHL+ + EEVQDVL+L+EH SL Sbjct: 213 VRLPVHVIRELNQVLRAKRHLEKSGVDGRDASLEDIAHLLGKTTEEVQDVLSLNEHTTSL 272 Query: 214 DTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGLDN 273 DTP D DP SL+D L PD +E++ L++ WL LS+K R VV RRFGL+ Sbjct: 273 DTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRYVVERRFGLNY 332 Query: 274 DDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGVGRDALF 319 +P+TLE+LA+EMG+TRERVRQ+QQEALVKLKR S+GV +DA+ Sbjct: 333 IEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL 378 >ref|YP_001898631.1| RNA polymerase sigma factor RpoS [Ralstonia pickettii 12J] gb|ACD26199.1| RNA polymerase, sigma 70 subunit, RpoD family [Ralstonia pickettii 12J] Length = 378 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/286 (69%), Positives = 230/286 (80%) Query: 34 LKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLVVS 93 +KVL AEL+ DT QHYLN+I KPLLT AEELHF+T AKAGEF ARQ MIE NLRLVVS Sbjct: 93 FRKVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVS 152 Query: 94 IAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQART 153 IAK Y+NRGV LLDLIEEGNLGLM AI+KF+PERGFRFSTYATWWIRQSIERAIMNQART Sbjct: 153 IAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQART 212 Query: 154 VRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVEEVQDVLALSEHAASL 213 VRLPVH++RELNQ+LRAK HLE DGRDAS EDIAHL+ + EEVQDVL+L+EH SL Sbjct: 213 VRLPVHVIRELNQVLRAKRHLEKSGVDGRDASLEDIAHLLGKTTEEVQDVLSLNEHTTSL 272 Query: 214 DTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGLDN 273 DTP D DP SL+D L PD +E++ L++ WL LS+K R VV RRFGL+ Sbjct: 273 DTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRYVVERRFGLNY 332 Query: 274 DDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGVGRDALF 319 +P+TLE+LA+EMG+TRERVRQ+QQEALVKLKR S+GV +DA+ Sbjct: 333 IEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL 378 >ref|NP_519328.1| RNA polymerase sigma factor RpoS [Ralstonia solanacearum GMI1000] emb|CAD14909.1| rna polymerase sigma s (sigma-38) factor transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 377 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/288 (68%), Positives = 232/288 (80%) Query: 32 DELKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLV 91 ++ + VL AEL+ DT QHYLN+I KPLLT AEELHF+T AKAGEF ARQ MIE NLRLV Sbjct: 90 EDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLV 149 Query: 92 VSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQA 151 VSIAK Y+NRGV LLDLIEEGNLGLM AI+KF+PERGFRFSTYATWWIRQSIERAIMNQA Sbjct: 150 VSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQA 209 Query: 152 RTVRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVEEVQDVLALSEHAA 211 RTVRLPVH++RELNQ+LRAK HLE DGRDAS EDIAHL+ + EEVQDVL+L+EH Sbjct: 210 RTVRLPVHVIRELNQVLRAKRHLEKSGIDGRDASIEDIAHLLGKTTEEVQDVLSLNEHTT 269 Query: 212 SLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGL 271 SLDTP D DP SL+D L PD +E++ L++ WL LS+K R VV RRFGL Sbjct: 270 SLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRYVVERRFGL 329 Query: 272 DNDDPSTLEQLASEMGITRERVRQVQQEALVKLKRLLTSRGVGRDALF 319 ++ +P+TLE+LA+EMG+TRERVRQ+QQEALVKLKR S+GV +DA+ Sbjct: 330 NHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL 377