BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0142.p (453 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herb... 939 0.0 ref|YP_004752565.1| 23S rRNA (uracil-5-)-methyltransferase [Coll... 725 0.0 ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [... 707 0.0 ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [... 698 0.0 ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalo... 680 0.0 ref|YP_004686094.1| 23S rRNA (uracil-5-)-methyltransferase RumA ... 659 0.0 ref|YP_726833.1| 23S rRNA 5-methyluridine methyltransferase [Ral... 658 0.0 ref|YP_296300.1| 23S rRNA 5-methyluridine methyltransferase [Ral... 655 0.0 ref|YP_584260.1| 23S rRNA m(5)U1939 methyltransferase [Cupriavid... 654 0.0 sp|Q1LLI5.2|RUMA_RALME RecName: Full=23S rRNA (uracil-5-)-methyl... 652 0.0 >ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ64446.1| 23S rRNA (Uracil-5-)-methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/453 (99%), Positives = 453/453 (100%) Query: 1 MQQDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM 60 MQQDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM Sbjct: 1 MQQDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM 60 Query: 61 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP 120 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP Sbjct: 61 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP 120 Query: 121 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL 180 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL Sbjct: 121 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL 180 Query: 181 VAGLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQT 240 VAGLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLK+FADEHKIEWWLQT Sbjct: 181 VAGLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKSFADEHKIEWWLQT 240 Query: 241 KGPDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR 300 KGPDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR Sbjct: 241 KGPDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR 300 Query: 301 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP 360 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP Sbjct: 301 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP 360 Query: 361 EDFVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGML 420 EDFVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGML Sbjct: 361 EDFVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGML 420 Query: 421 VHLGGYALKYAGVVNMFPHTAHVESIAVFDLPE 453 VHLGGYALKYAGVVNMFPHTAHVESIAVFDLPE Sbjct: 421 VHLGGYALKYAGVVNMFPHTAHVESIAVFDLPE 453 >ref|YP_004752565.1| 23S rRNA (uracil-5-)-methyltransferase [Collimonas fungivorans Ter331] gb|AEK61742.1| 23S rRNA (uracil-5-)-methyltransferase [Collimonas fungivorans Ter331] Length = 449 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/452 (77%), Positives = 387/452 (85%), Gaps = 3/452 (0%) Query: 1 MQQDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM 60 MQQD I +IKSLDMD RG+GHL+NEDG+QGKVIFVEGALPGERVSF SYRKKPKWEA M Sbjct: 1 MQQDTI-DIKSLDMDARGIGHLQNEDGSQGKVIFVEGALPGERVSFLSYRKKPKWEAATM 59 Query: 61 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP 120 T LH ES LRVKP+C FG CGGCAMQHLEP+AQVA+KQRVLEDNLWH+GK KAE MLRP Sbjct: 60 TALHKESVLRVKPQCPVFGMCGGCAMQHLEPTAQVAIKQRVLEDNLWHIGKVKAESMLRP 119 Query: 121 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL 180 IYGPTWGYRYRARISVR+V KKGGVLVGFHE++SSFI DMKTCEILP NVSAMLVPLR L Sbjct: 120 IYGPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHL 179 Query: 181 VAGLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQT 240 + LS+ D +PQIELAVGEG G KVT LVLRIM A + DE+ LK FAD++++ WWLQT Sbjct: 180 IGSLSLIDHIPQIELAVGEGPQG-KVTALVLRIMAAPTADDEIKLKAFADQYQVNWWLQT 238 Query: 241 KGPDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR 300 GPD+A P+YPAQ L YTLPEFG+RMPFKPTDFTQVNHQINRVLVARALRLLDVQP +R Sbjct: 239 AGPDSAYPFYPAQGELYYTLPEFGVRMPFKPTDFTQVNHQINRVLVARALRLLDVQPHER 298 Query: 301 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP 360 VADLFCGLGNFTLP+AT A++VVGIEGS AL RA +NA VN + KT+F+CRNLFEA Sbjct: 299 VADLFCGLGNFTLPLATQAQQVVGIEGSQALINRAGENAAVNRLSDKTTFHCRNLFEASA 358 Query: 361 EDFVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGML 420 EDFVALGKFDRMLIDPPR+GA VC+ALV L L P+RIVYVSCNP+TLARDAG+L Sbjct: 359 EDFVALGKFDRMLIDPPRDGAAAVCEALVGLAAIDPALMPQRIVYVSCNPSTLARDAGLL 418 Query: 421 VHLGGYALKYAGVVNMFPHTAHVESIAVFDLP 452 + GGY L AGVVNMFPHTAHVESIAVFDLP Sbjct: 419 I-AGGYRLSQAGVVNMFPHTAHVESIAVFDLP 449 >ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [Janthinobacterium sp. Marseille] gb|ABR89364.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Janthinobacterium sp. Marseille] Length = 457 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/449 (74%), Positives = 379/449 (84%), Gaps = 1/449 (0%) Query: 3 QDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTT 62 Q II+I+SLDM+ RGVGHL+NEDGT GKV+FVEGALP ERV + SYRKK WEA M + Sbjct: 2 QQTIIDIESLDMEARGVGHLQNEDGTPGKVVFVEGALPKERVVYSSYRKKANWEAAKMMS 61 Query: 63 LHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 122 L ESSLR KP+C YFG CGGC+MQHLEPSAQVA+KQR+LEDNL H+GK KAE MLRPI+ Sbjct: 62 LIKESSLRTKPKCVYFGICGGCSMQHLEPSAQVALKQRILEDNLKHIGKVKAETMLRPIH 121 Query: 123 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 182 GPTWGYRYRARISVR+V KKGGVLVGFHE++SSFI DMKTCEILPPNVSAMLVPLREL+A Sbjct: 122 GPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPPNVSAMLVPLRELIA 181 Query: 183 GLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKG 242 LS+ D +PQIELA+G+G KVT +VLRIM LS DEV LK FAD H+++WWLQ G Sbjct: 182 SLSVIDHLPQIELAIGQGAQ-EKVTAMVLRIMTELSADDEVKLKAFADLHQVQWWLQPAG 240 Query: 243 PDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 302 PD+A +YP ++ L Y LPEF ++MPFKPTDFTQVNHQINRVLVARALRLLD QP DR+A Sbjct: 241 PDSAYQFYPTENNLHYALPEFNVKMPFKPTDFTQVNHQINRVLVARALRLLDAQPTDRIA 300 Query: 303 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPED 362 DLFCGLGNFTLPIAT AREVVGIEGST LTER+L+NA NG+ KTSFYCRNLFEAK ED Sbjct: 301 DLFCGLGNFTLPIATQAREVVGIEGSTTLTERSLENAVANGLADKTSFYCRNLFEAKAED 360 Query: 363 FVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVH 422 FV LGKFDRMLIDPPR+GA+ VC+AL EL Q L P RIVYVSCNP+TLARDA +LV+ Sbjct: 361 FVELGKFDRMLIDPPRDGALAVCEALSELGKSQPDLLPSRIVYVSCNPSTLARDAAVLVN 420 Query: 423 LGGYALKYAGVVNMFPHTAHVESIAVFDL 451 G Y LK AGV+NMFPHT+HVES+AVF+L Sbjct: 421 EGLYDLKNAGVINMFPHTSHVESMAVFEL 449 >ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [Herminiimonas arsenicoxydans] emb|CAL61433.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Herminiimonas arsenicoxydans] Length = 461 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/451 (73%), Positives = 378/451 (83%), Gaps = 1/451 (0%) Query: 3 QDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTT 62 Q II+I+SLDM+ RGVGHL+NEDGTQGKVIFVEGALP ERV + SYRKK WEA M Sbjct: 2 QQTIIDIESLDMEARGVGHLQNEDGTQGKVIFVEGALPKERVVYSSYRKKANWEAAKMMV 61 Query: 63 LHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 122 L ESSLRV+P+C YFG CGGC+MQHLEP+AQVAMKQR+LEDNL H+GK KAE MLRPI+ Sbjct: 62 LLKESSLRVQPKCAYFGICGGCSMQHLEPTAQVAMKQRILEDNLKHIGKVKAETMLRPIH 121 Query: 123 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 182 GPTWGYRYRARISVR+V KKGGVLVGFHE++SSFI DMKTCEILP NVSAMLVPLR L+ Sbjct: 122 GPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHLIG 181 Query: 183 GLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKG 242 LSI D +PQIELA+G+G+ +K+T LVLRIM LS D+V LK FADE+K++WWLQ G Sbjct: 182 SLSIIDHLPQIELAIGQGEQ-DKITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPAG 240 Query: 243 PDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 302 PD+A +YP L Y+LPEFGI+MPFKPTDFTQVNHQINRVLVARALRLLD Q DR+A Sbjct: 241 PDSAYQFYPEDENLHYSLPEFGIKMPFKPTDFTQVNHQINRVLVARALRLLDAQATDRIA 300 Query: 303 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPED 362 DLFCGLGNFTLPIAT A EVVGIEGST LTERAL+NA NG+ KT+FY RNLFEAK +D Sbjct: 301 DLFCGLGNFTLPIATQAGEVVGIEGSTTLTERALENAVANGLAGKTAFYSRNLFEAKTDD 360 Query: 363 FVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVH 422 F+ALGKFDRMLIDPPR+GA+ VC+AL L + L P RIVYVSCNP+TLARDA +LV+ Sbjct: 361 FIALGKFDRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDAAVLVN 420 Query: 423 LGGYALKYAGVVNMFPHTAHVESIAVFDLPE 453 G Y LK AGVVNMFPHT+HVES+AVF+L E Sbjct: 421 EGPYVLKNAGVVNMFPHTSHVESMAVFELKE 451 >ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33385.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 434 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/438 (74%), Positives = 372/438 (84%), Gaps = 5/438 (1%) Query: 14 MDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTTLHSESSLRVKP 73 M+ RGVG+L NEDG+ GKVIFVEGALPGE+V F S+RKK KWEA MT L ES++RV P Sbjct: 1 MEARGVGNLVNEDGSHGKVIFVEGALPGEQVRFLSFRKKSKWEAARMTALVRESAMRVTP 60 Query: 74 RCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIYGPTWGYRYRAR 133 +C YFGTCGGCAMQHL+ +AQVA+KQRVLEDNLWH+GK + +MLRPIYGPTWGYRYRAR Sbjct: 61 QCAYFGTCGGCAMQHLDAAAQVAIKQRVLEDNLWHIGKVRPRLMLRPIYGPTWGYRYRAR 120 Query: 134 ISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVAGLSIRDRMPQI 193 +SVR+V +KGGVLVGF EK+SS++ DM +C+ILPP VSA+LVPLREL+A LSI +++PQI Sbjct: 121 LSVRNVPRKGGVLVGFIEKKSSYLTDMTSCDILPPKVSALLVPLRELIAALSIVEQIPQI 180 Query: 194 ELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKGPDTAAPYYPAQ 253 ELAVGEG+DG VTVLVLRIM LS ADEVLLK FAD H+I WWLQ GP++A PYYPA Sbjct: 181 ELAVGEGNDG-VVTVLVLRIMAPLSRADEVLLKAFADLHQIVWWLQAAGPESAVPYYPAN 239 Query: 254 SRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVADLFCGLGNFTL 313 LQY+LPEFGI MPFKPTDFTQVNHQINRVLVARALRLLD QP +R+ADLFCGLGNFTL Sbjct: 240 QSLQYSLPEFGITMPFKPTDFTQVNHQINRVLVARALRLLDAQPDERIADLFCGLGNFTL 299 Query: 314 PIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPEDFVALGKFDRML 373 PIAT AR VVGIEGSTALT+RA+DNA+ NGV KTSF CRNLF+ D VALG FDR+L Sbjct: 300 PIATQARAVVGIEGSTALTQRAMDNARFNGVQDKTSFGCRNLFDITGADLVALGYFDRLL 359 Query: 374 IDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVHLGGYALKYAGV 433 IDPPR+GAM +C+AL EL P Q KP+RIVYVSCNPATLARDA +LV GGY L AGV Sbjct: 360 IDPPRDGAMALCEALAELQPAQ---KPRRIVYVSCNPATLARDAQLLVA-GGYVLSQAGV 415 Query: 434 VNMFPHTAHVESIAVFDL 451 VNMFPHTAHVES+AVFDL Sbjct: 416 VNMFPHTAHVESMAVFDL 433 >ref|YP_004686094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cupriavidus necator N-1] gb|AEI77613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cupriavidus necator N-1] Length = 442 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/445 (69%), Positives = 367/445 (82%), Gaps = 5/445 (1%) Query: 6 IIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTTLHS 65 ++ I SLDM+ RGVG L NEDGT GKVIFVEGALPGE VS++S+R+KP +E + + Sbjct: 1 MVSIDSLDMEARGVGRLVNEDGTPGKVIFVEGALPGETVSYRSFRRKPSYEQAHLVEVRQ 60 Query: 66 ESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIYGPT 125 ES +RVKP C +FG CGGC+MQHL+ AQ+A+KQRVLEDNLWHL K K +V+ RPI GP Sbjct: 61 ESVMRVKPGCQHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPD 120 Query: 126 WGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVAGLS 185 WGYRYRAR++VRHVAKKGGVLVGFHE++SS++ADM CEILPP+VSAMLVPLRELV GLS Sbjct: 121 WGYRYRARLTVRHVAKKGGVLVGFHERKSSYVADMTRCEILPPHVSAMLVPLRELVGGLS 180 Query: 186 IRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKGPDT 245 IRDRMPQIELAVG+ +VT LVLRI+E L+ AD+ LL+ FAD+H++++WLQ KGPDT Sbjct: 181 IRDRMPQIELAVGQ-----EVTALVLRILEPLTDADKDLLRAFADQHRVQFWLQPKGPDT 235 Query: 246 AAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVADLF 305 P+YPA + L YTLPEFGIRMPFKPTDFTQVNHQINRVL+ RALRLLD QPQDR+ DLF Sbjct: 236 VYPFYPADAELAYTLPEFGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAQPQDRLLDLF 295 Query: 306 CGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPEDFVA 365 CG+GNFTLP+AT + V+GIEGS ALT RAL NA+ NG+ A+T F CRNLFE ED A Sbjct: 296 CGIGNFTLPLATQGKSVMGIEGSEALTMRALANAEYNGLAARTEFACRNLFEVTTEDIAA 355 Query: 366 LGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVHLGG 425 LG+FDR L+DPPREGA+ VCKAL EL + + P+RIVYVSC+PATLARDAG+LVH G Sbjct: 356 LGRFDRWLVDPPREGALAVCKALGELAQQGSDVLPQRIVYVSCSPATLARDAGLLVHEAG 415 Query: 426 YALKYAGVVNMFPHTAHVESIAVFD 450 Y L AGVVNMFPHT+HVESIAVFD Sbjct: 416 YRLAGAGVVNMFPHTSHVESIAVFD 440 >ref|YP_726833.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha H16] sp|Q0K956.1|RUMA_CUPNH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase emb|CAJ93465.1| tRNA (Uracil-5-)-methyltransferase [Ralstonia eutropha H16] Length = 441 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/444 (70%), Positives = 367/444 (82%), Gaps = 5/444 (1%) Query: 7 IEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTTLHSE 66 + I SLDM+ RGVG L NEDGT GKVIFVEGALPGE VS++S+R+KP +E + + E Sbjct: 1 MSIDSLDMEARGVGRLLNEDGTPGKVIFVEGALPGETVSYRSFRRKPSYEQAHLVEVRQE 60 Query: 67 SSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIYGPTW 126 S +RVKP C +FG CGGC+MQHL+ AQ+A+KQRVLEDNLWHL K K +V+ RPI GP W Sbjct: 61 SVMRVKPGCQHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDW 120 Query: 127 GYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVAGLSI 186 GYRYRAR++VRHVAKKGGVLVGFHE++SS++ADM CEILPP+VSAMLVPLRELV GLSI Sbjct: 121 GYRYRARLTVRHVAKKGGVLVGFHERKSSYVADMTRCEILPPHVSAMLVPLRELVGGLSI 180 Query: 187 RDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKGPDTA 246 RDRMPQIELAVG+ +VT LVLRI+E L+ AD+ LL+ FAD+HK+++WLQ KGPDT Sbjct: 181 RDRMPQIELAVGQ-----EVTALVLRILEPLTDADKDLLRAFADQHKVQFWLQPKGPDTV 235 Query: 247 APYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVADLFC 306 P+YPA + L YTLPEFGIRMPFKPTDFTQVNHQINRVL+ RALRLLD QPQDR+ DLFC Sbjct: 236 YPFYPADAELAYTLPEFGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAQPQDRLLDLFC 295 Query: 307 GLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPEDFVAL 366 G+GNFTLP+AT + V+GIEGS ALT RAL NA+ NG+ A+T F CRNLFE ED AL Sbjct: 296 GIGNFTLPLATQGKSVMGIEGSEALTTRALANAEYNGLAARTEFACRNLFEVTAEDIAAL 355 Query: 367 GKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVHLGGY 426 G+FDR L+DPPREGA+ VCKAL EL + ++ P+RIVYVSC+PATLARDAG+LVH GY Sbjct: 356 GRFDRWLVDPPREGALAVCKALGELAQQGSNVLPQRIVYVSCSPATLARDAGLLVHGAGY 415 Query: 427 ALKYAGVVNMFPHTAHVESIAVFD 450 L AGVVNMFPHT+HVESIAVF+ Sbjct: 416 RLAGAGVVNMFPHTSHVESIAVFE 439 >ref|YP_296300.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha JMP134] sp|Q46ZH7.1|RUMA_CUPPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gb|AAZ61456.1| 23S rRNA m(5)U-1939 methyltransferase [Ralstonia eutropha JMP134] Length = 463 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/448 (69%), Positives = 364/448 (81%), Gaps = 5/448 (1%) Query: 3 QDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTT 62 D ++ I SLDM+ RGVG L NEDGT GKVIFVEGALPGE VS++S+R+KP +E + Sbjct: 19 SDPVVSIDSLDMEARGVGRLVNEDGTPGKVIFVEGALPGETVSYKSFRRKPSYEQAHLLE 78 Query: 63 LHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 122 + ES +RVKP C +FG CGGC+MQHL+ AQ+A+KQRVLEDNLWHL K + EVM RPI Sbjct: 79 VRRESVMRVKPGCKHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVRPEVMFRPIA 138 Query: 123 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 182 GP WGYRYRAR++VR+VAKKGGVLVGFHE++SS++ADM +CEILPP++SAMLVPLRELV Sbjct: 139 GPDWGYRYRARLTVRYVAKKGGVLVGFHERKSSYVADMTSCEILPPHISAMLVPLRELVT 198 Query: 183 GLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKG 242 GLSIRDRMPQIELAVG ++VT LVLRI+E L+ AD+ LL+ FAD+H +++WLQ KG Sbjct: 199 GLSIRDRMPQIELAVG-----HEVTALVLRILEPLTDADKDLLRAFADQHNVQFWLQPKG 253 Query: 243 PDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 302 PDT P+YP L YTLPEFGIRMPFKPTDFTQVNH INRVL+ RALRLLDVQPQDR+ Sbjct: 254 PDTVVPFYPLDRELAYTLPEFGIRMPFKPTDFTQVNHHINRVLIGRALRLLDVQPQDRLL 313 Query: 303 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPED 362 DLFCG+GNFTLP+AT R V+GIEGS ALT RAL NA NG+ KT F CRNLFE ED Sbjct: 314 DLFCGIGNFTLPLATQGRSVMGIEGSEALTTRALANAGYNGLAEKTEFACRNLFEVTAED 373 Query: 363 FVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVH 422 ALG+FDR LIDPPREGA+ VCKAL EL + + P+RIVYVSC+PATLARDAG+LVH Sbjct: 374 IAALGRFDRWLIDPPREGALAVCKALGELSQQGSDVLPQRIVYVSCSPATLARDAGLLVH 433 Query: 423 LGGYALKYAGVVNMFPHTAHVESIAVFD 450 GY L AGVVNMFPHT+HVESIAVF+ Sbjct: 434 EAGYRLAGAGVVNMFPHTSHVESIAVFE 461 >ref|YP_584260.1| 23S rRNA m(5)U1939 methyltransferase [Cupriavidus metallidurans CH34] gb|ABF08991.1| 23S rRNA (uracil-5-)-methyltransferase [Cupriavidus metallidurans CH34] Length = 491 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/448 (68%), Positives = 363/448 (81%), Gaps = 5/448 (1%) Query: 3 QDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTT 62 D +++I SLDM+ RGVG LENEDGT GKVIFVEGALPGE V+++SYR+KP +E + Sbjct: 47 NDPVVKIDSLDMEARGVGRLENEDGTPGKVIFVEGALPGETVAYRSYRRKPSYEQAHLVE 106 Query: 63 LHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 122 + S +RVKP C +FG CGGC+MQHL+ AQ+A+KQRVLEDNLWHL K K +V+ RPI Sbjct: 107 VKQASVMRVKPGCQHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIA 166 Query: 123 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 182 GP WGYRYRAR++VRHV KKGGVLVGFHE++SS++ADM CEILPP+VSAMLVPLRELV Sbjct: 167 GPDWGYRYRARLTVRHVVKKGGVLVGFHERKSSYVADMTHCEILPPHVSAMLVPLRELVG 226 Query: 183 GLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKG 242 GLSI DRMPQIELAVG +VT LVLR++E L+ AD+ LL+ FAD+H++++WLQ KG Sbjct: 227 GLSIHDRMPQIELAVGA-----EVTALVLRVLEPLNDADKDLLRAFADQHQVQFWLQPKG 281 Query: 243 PDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 302 PDT P+YPA+ L YTLPEFGIRMPFKPTDFTQVNHQINRVL+ RALRLLD +P DR+ Sbjct: 282 PDTVYPFYPAEQELAYTLPEFGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAKPTDRLL 341 Query: 303 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPED 362 DLFCG+GNFTLP+AT V+GIEGS LT RAL NA+ NG+ AKTSF CRNLFE ED Sbjct: 342 DLFCGIGNFTLPLATQGASVMGIEGSEVLTTRALANAEYNGLAAKTSFACRNLFEVTAED 401 Query: 363 FVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVH 422 ALG+FDR L+DPPREGA+ VCKAL EL + PKRIVYVSC+PATLARDAG+LVH Sbjct: 402 IAALGRFDRWLVDPPREGALAVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVH 461 Query: 423 LGGYALKYAGVVNMFPHTAHVESIAVFD 450 GY L AGVVNMFPHT+HVESIAVF+ Sbjct: 462 EAGYRLAGAGVVNMFPHTSHVESIAVFE 489 >sp|Q1LLI5.2|RUMA_RALME RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 466 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/448 (68%), Positives = 363/448 (81%), Gaps = 5/448 (1%) Query: 3 QDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTT 62 D +++I SLDM+ RGVG LENEDGT GKVIFVEGALPGE V+++SYR+KP +E + Sbjct: 22 NDPVVKIDSLDMEARGVGRLENEDGTPGKVIFVEGALPGETVAYRSYRRKPSYEQAHLVE 81 Query: 63 LHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 122 + S +RVKP C +FG CGGC+MQHL+ AQ+A+KQRVLEDNLWHL K K +V+ RPI Sbjct: 82 VKQASVMRVKPGCQHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIA 141 Query: 123 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 182 GP WGYRYRAR++VRHV KKGGVLVGFHE++SS++ADM CEILPP+VSAMLVPLRELV Sbjct: 142 GPDWGYRYRARLTVRHVVKKGGVLVGFHERKSSYVADMTHCEILPPHVSAMLVPLRELVG 201 Query: 183 GLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKTFADEHKIEWWLQTKG 242 GLSI DRMPQIELAVG +VT LVLR++E L+ AD+ LL+ FAD+H++++WLQ KG Sbjct: 202 GLSIHDRMPQIELAVGA-----EVTALVLRVLEPLNDADKDLLRAFADQHQVQFWLQPKG 256 Query: 243 PDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 302 PDT P+YPA+ L YTLPEFGIRMPFKPTDFTQVNHQINRVL+ RALRLLD +P DR+ Sbjct: 257 PDTVYPFYPAEQELAYTLPEFGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAKPTDRLL 316 Query: 303 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPED 362 DLFCG+GNFTLP+AT V+GIEGS LT RAL NA+ NG+ AKTSF CRNLFE ED Sbjct: 317 DLFCGIGNFTLPLATQGASVMGIEGSEVLTTRALANAEYNGLAAKTSFACRNLFEVTAED 376 Query: 363 FVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVH 422 ALG+FDR L+DPPREGA+ VCKAL EL + PKRIVYVSC+PATLARDAG+LVH Sbjct: 377 IAALGRFDRWLVDPPREGALAVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVH 436 Query: 423 LGGYALKYAGVVNMFPHTAHVESIAVFD 450 GY L AGVVNMFPHT+HVESIAVF+ Sbjct: 437 EAGYRLAGAGVVNMFPHTSHVESIAVFE 464