BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0115.p (385 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776328.1| amino acid ABC transporter periplasmic prote... 763 0.0 ref|YP_004753586.1| leucine-, isoleucine-, valine-, threonine-, ... 654 0.0 gb|EGW60816.1| Extracellular ligand-binding receptor [Dechloroso... 519 e-145 gb|EGP45824.1| receptor family ligand binding region family prot... 491 e-136 gb|EFV83146.1| ABC transporter [Achromobacter xylosoxidans C54] 490 e-136 ref|ZP_06685734.1| branched chain amino acid ABC superfamily ATP... 490 e-136 ref|YP_003976729.1| receptor family ligand binding region family... 487 e-135 emb|CAQ18397.1| amino acid-binding periplasmic protein (pbp) [Ra... 487 e-135 ref|YP_002256922.1| amino acid-binding periplasmic protein (pbp)... 486 e-135 ref|YP_787328.1| ABC transporter substrate-binding protein [Bord... 486 e-135 >ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19672.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ64420.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/385 (99%), Positives = 385/385 (100%) Query: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA Sbjct: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV Sbjct: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG Sbjct: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR Sbjct: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGADP 300 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGADP Sbjct: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGADP 300 Query: 301 DQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVAG 360 DQFAAQAYDAMYI+ADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVAG Sbjct: 301 DQFAAQAYDAMYIVADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVAG 360 Query: 361 KQVGFDADQEAIVNIAKGGKFVLLK 385 KQVGFDADQEAIVNIAKGGKFVLLK Sbjct: 361 KQVGFDADQEAIVNIAKGGKFVLLK 385 >ref|YP_004753586.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK62763.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 385 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/385 (83%), Positives = 353/385 (91%) Query: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQF T+LKT+P L++ + L+ AA AAD+KLG+A ALTGPAAKYGVAIKNGF+LA++E+NA Sbjct: 1 MQFKTILKTLPLLMLASGLASAAHAADVKLGLAAALTGPAAKYGVAIKNGFSLAADEVNA 60 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 GGVNG+KL LVIEDEQGKKEEAINVFKKLIF+DK L VFGPTLSNSAFAADPIANAAKV Sbjct: 61 AGGVNGNKLLLVIEDEQGKKEEAINVFKKLIFKDKALLVFGPTLSNSAFAADPIANAAKV 120 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 V FGTSNTADGITAMGPFTFRNSVMEADVLPVT +AAVKHFGIKKVA+IYGNDDAFTKSG Sbjct: 121 VAFGTSNTADGITAMGPFTFRNSVMEADVLPVTTRAAVKHFGIKKVAIIYGNDDAFTKSG 180 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YDVFK TL QKIPVTTTEAYAKGDVDFKAQLTKIKA NPDAIVCSCL EEAANIILQTR Sbjct: 181 YDVFKGTLADQKIPVTTTEAYAKGDVDFKAQLTKIKASNPDAIVCSCLTEEAANIILQTR 240 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGADP 300 ALGMKQPFIGGNGLNSPKLF+IAK AGD+T+MGSPWS+EN TPANKAFI AYKAKFG+DP Sbjct: 241 ALGMKQPFIGGNGLNSPKLFDIAKGAGDDTIMGSPWSSENLTPANKAFIAAYKAKFGSDP 300 Query: 301 DQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVAG 360 DQFAAQAYDA++++A ALK +KLSG L KDR AL+ ALPAV IDGATGKFAFR AP V G Sbjct: 301 DQFAAQAYDALHVVAAALKKIKLSGALDKDRIALQQALPAVTIDGATGKFAFRKAPPVTG 360 Query: 361 KQVGFDADQEAIVNIAKGGKFVLLK 385 K+VG+DA QEAIVNIAKGGKF+LLK Sbjct: 361 KEVGYDAQQEAIVNIAKGGKFILLK 385 >gb|EGW60816.1| Extracellular ligand-binding receptor [Dechlorosoma suillum PS] Length = 384 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 254/355 (71%), Positives = 297/355 (83%) Query: 27 DIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINV 86 DIK+GVA ALTG AA+YGVAI+NGF LA++EINAKGGVNG+K+ LV+EDEQGKKEE INV Sbjct: 24 DIKIGVAAALTGGAAQYGVAIRNGFQLAADEINAKGGVNGNKIQLVVEDEQGKKEEGINV 83 Query: 87 FKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFGTSNTADGITAMGPFTFRNSVME 146 FKKLIFQDKVL VFGPTLSNS FAA P+AN AK VVFGTS TA+GIT +GP+ FRNSVME Sbjct: 84 FKKLIFQDKVLMVFGPTLSNSMFAAGPVANGAKTVVFGTSVTANGITDIGPYVFRNSVME 143 Query: 147 ADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEHQKIPVTTTEAYAKGDV 206 +DVLPVTV A KH+ +K+VAVIYGNDDAFTKSGYDVFK LE QK+PVTTTE Y KGDV Sbjct: 144 SDVLPVTVATATKHYKLKQVAVIYGNDDAFTKSGYDVFKKVLEDQKLPVTTTETYVKGDV 203 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DFKAQLTKIKA NPDA++CSCLAEEAANI+LQ R LG+K PFIGGNG NSPKLFEI+K A Sbjct: 204 DFKAQLTKIKASNPDAVICSCLAEEAANIMLQARGLGIKVPFIGGNGFNSPKLFEISKLA 263 Query: 267 GDNTLMGSPWSAENQTPANKAFITAYKAKFGADPDQFAAQAYDAMYILADALKNVKLSGN 326 G+ T +GSPWS N PANKAF+ AY K+ A+P+QFAAQA+DA+++ A AL+ VKLSG+ Sbjct: 264 GEGTFVGSPWSNTNPAPANKAFVAAYVKKYNAEPNQFAAQAFDALHVAAAALQEVKLSGD 323 Query: 327 LAKDRDALRAALPAVKIDGATGKFAFRAAPAVAGKQVGFDADQEAIVNIAKGGKF 381 +A DR+AL+ ALP I+GATG F FR A +GK G+DADQ+ + + KGGKF Sbjct: 324 IAADREALKNALPKATINGATGPFKFRPAVTKSGKPGGWDADQKPFIYVVKGGKF 378 >gb|EGP45824.1| receptor family ligand binding region family protein 7 [Achromobacter xylosoxidans AXX-A] Length = 384 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 256/386 (66%), Positives = 296/386 (76%), Gaps = 3/386 (0%) Query: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQ T K + A LI A + AA AADIKLGVAEAL+G AA+YGV+I+NGF LA++EINA Sbjct: 1 MQSKT--KKLLAALIAAGIVPAAHAADIKLGVAEALSGGAAQYGVSIRNGFQLAADEINA 58 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 GG+NG+K+ LV+EDEQGKKEEAINVFKKLIF+D VL VFGPTLSNSA AADP+A AAK Sbjct: 59 AGGINGNKIVLVVEDEQGKKEEAINVFKKLIFKDNVLMVFGPTLSNSAQAADPVAQAAKT 118 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 V FGTSNTADGIT++G + FRNSV EADVLP T+ G+K VAV+YGNDD FTKSG Sbjct: 119 VAFGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSG 178 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YD FK LE QKIPVTTTE +AKGDVDFKAQLTKIK NPDAIV S L E A I++Q R Sbjct: 179 YDNFKKALEDQKIPVTTTETFAKGDVDFKAQLTKIKGTNPDAIVLSALLAEGAPIMVQAR 238 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTL-MGSPWSAENQTPANKAFITAYKAKFGAD 299 LG+ P IGGNG+NS K+F++A N L +GSPWS EN+ P N FI AYKAKF Sbjct: 239 QLGLNVPVIGGNGMNSVKIFDLAPGGASNNLWIGSPWSIENKAPENVKFIDAYKAKFNGA 298 Query: 300 PDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVA 359 PDQFAAQ+YDAMYI+A ALKN K+SG LAKDR ALR ALP+V+ GATG F FR A A Sbjct: 299 PDQFAAQSYDAMYIVAQALKNTKISGELAKDRAALRDALPSVQWTGATGAFKFRQATDRA 358 Query: 360 GKQVGFDADQEAIVNIAKGGKFVLLK 385 GK G+DADQ IV++ K GK+V+ K Sbjct: 359 GKPAGYDADQAPIVSVTKDGKYVIEK 384 >gb|EFV83146.1| ABC transporter [Achromobacter xylosoxidans C54] Length = 384 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 256/386 (66%), Positives = 296/386 (76%), Gaps = 3/386 (0%) Query: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQ T K + A LI A + AA AADIKLGVAEAL+G AA+YGV+I+NGF LA++EINA Sbjct: 1 MQSKT--KKLLAALIAAGIVPAAHAADIKLGVAEALSGGAAQYGVSIRNGFQLAADEINA 58 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 GG+NG+K+ LV+EDEQGKKEEAINVFKKLIF+D VL VFGPTLSNSA AADPIA AAK Sbjct: 59 AGGINGNKIVLVVEDEQGKKEEAINVFKKLIFKDNVLMVFGPTLSNSAQAADPIAQAAKT 118 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 V FGTSNTADGIT++G + FRNSV EADVLP T+ G+K VAV+YGNDD FTKSG Sbjct: 119 VAFGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSG 178 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YD FK LE QKIPVTTTE +AKGDVDFKAQLTKIK NPDAIV S L E A I++Q R Sbjct: 179 YDNFKKALEDQKIPVTTTETFAKGDVDFKAQLTKIKGTNPDAIVLSALLAEGAPIMVQAR 238 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTL-MGSPWSAENQTPANKAFITAYKAKFGAD 299 LG+ P IGGNG+NS K+F++A N L +GSPWS EN+ P N FI AYKAKF Sbjct: 239 QLGLNVPVIGGNGMNSVKIFDLAPGGASNNLWIGSPWSIENKAPENVKFIDAYKAKFNGA 298 Query: 300 PDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVA 359 PDQFAAQ+YDAMYI+A ALKN K++G LAKDR ALR ALP+V+ GATG F FR A A Sbjct: 299 PDQFAAQSYDAMYIVAQALKNTKITGELAKDRAALRDALPSVQWTGATGAFKFRQATDRA 358 Query: 360 GKQVGFDADQEAIVNIAKGGKFVLLK 385 GK G+DADQ IV++ K GK+V+ K Sbjct: 359 GKPAGYDADQAPIVSVTKDGKYVIEK 384 >ref|ZP_06685734.1| branched chain amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF77269.1| branched chain amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 409 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 257/386 (66%), Positives = 294/386 (76%), Gaps = 3/386 (0%) Query: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQ T K + A LI A + AA AADIKLGVAEAL+G AA+YGV+I+NGF LA++EINA Sbjct: 26 MQSKT--KKLLAALIAAGIVPAAHAADIKLGVAEALSGGAAQYGVSIRNGFQLAADEINA 83 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 GG+NG+KL LV+EDEQGKKEEAINVFKKLIF+D VL VFGPTLSNSA AADPIA AAK Sbjct: 84 AGGINGNKLVLVVEDEQGKKEEAINVFKKLIFKDNVLMVFGPTLSNSAQAADPIAQAAKT 143 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 V FGTSNTADGIT++G + FRNSV EADVLP T+ G+K VAV+YGNDD FTKSG Sbjct: 144 VAFGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSG 203 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YD FK LE QKIPVTTTE +AKGDVDFKAQLTKIK NPDAIV S L E A I++Q R Sbjct: 204 YDNFKKALEDQKIPVTTTETFAKGDVDFKAQLTKIKGTNPDAIVLSALLAEGAPIMVQAR 263 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTL-MGSPWSAENQTPANKAFITAYKAKFGAD 299 LG+ P IGGNG+NS K+F++A N L +GSPWS EN+ P N FI AYKAKF Sbjct: 264 QLGLNVPVIGGNGMNSVKIFDLAPGGASNNLWIGSPWSIENKAPENVKFIDAYKAKFNGS 323 Query: 300 PDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVA 359 PDQFAAQ+YDAMYI+A ALKN K++G L KDR ALR ALPAV GATG F FR A A Sbjct: 324 PDQFAAQSYDAMYIVAQALKNTKITGELPKDRAALRDALPAVTWTGATGPFKFRQANDRA 383 Query: 360 GKQVGFDADQEAIVNIAKGGKFVLLK 385 GK G+DADQ IV++ K GK+V+ K Sbjct: 384 GKPAGYDADQAPIVSVTKDGKYVIEK 409 >ref|YP_003976729.1| receptor family ligand binding region family protein 7 [Achromobacter xylosoxidans A8] gb|ADP14014.1| receptor family ligand binding region family protein 7 [Achromobacter xylosoxidans A8] Length = 384 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 256/386 (66%), Positives = 294/386 (76%), Gaps = 3/386 (0%) Query: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQ T K + A LI A + AA AADIK+GVAEAL+G AA+YGV+I+NGF LA++EINA Sbjct: 1 MQSKT--KKLLAALIAAGIVPAAHAADIKIGVAEALSGGAAQYGVSIRNGFQLAADEINA 58 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 GG+NG+K+ LV+EDEQGKKEEAINVFKKLIF+D VL VFGPTLSNSA AADPIA AAK Sbjct: 59 AGGINGNKIVLVVEDEQGKKEEAINVFKKLIFKDNVLMVFGPTLSNSAQAADPIAQAAKT 118 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 V FGTSNTADGIT++G + FRNSV EADVLP T+ G+K VAV+YGNDD FTKSG Sbjct: 119 VAFGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSG 178 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YD FK LE QKIPVTTTE +AKGDVDFKAQLTKIK NPDAIV S L E A I++Q R Sbjct: 179 YDNFKKALEDQKIPVTTTETFAKGDVDFKAQLTKIKGTNPDAIVLSALLAEGAPIMVQAR 238 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTL-MGSPWSAENQTPANKAFITAYKAKFGAD 299 LG+ P IGGNG+NS K+F++A N L +GSPWS EN+ N FI AYKAKF Sbjct: 239 QLGLNVPVIGGNGMNSVKIFDLAPGGASNNLWIGSPWSIENKAAENVKFIDAYKAKFNGA 298 Query: 300 PDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVA 359 PDQFAAQ+YDAMYI A ALKNVKLSG+L KDR ALR ALP+V GATG F FR A A Sbjct: 299 PDQFAAQSYDAMYIAAQALKNVKLSGDLPKDRTALRDALPSVTWTGATGPFKFRQANDRA 358 Query: 360 GKQVGFDADQEAIVNIAKGGKFVLLK 385 GK G+DADQ IV++ K GK+V+ K Sbjct: 359 GKPAGYDADQAPIVSVTKDGKYVIEK 384 >emb|CAQ18397.1| amino acid-binding periplasmic protein (pbp) [Ralstonia solanacearum MolK2] Length = 406 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 258/387 (66%), Positives = 295/387 (76%), Gaps = 8/387 (2%) Query: 6 MLKTIPALLIGATLSQAALAA-------DIKLGVAEALTGPAAKYGVAIKNGFTLASEEI 58 M KTI LL+ A + AA+AA DIK+GVAEAL+G AA+YG AI+NGF LA++EI Sbjct: 21 MQKTIKRLLVTAAAAGAAVAAGAASAAQDIKIGVAEALSGGAAQYGAAIRNGFQLAADEI 80 Query: 59 NAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAA 118 NA GG+NG K+ALVIEDEQGKKEEAINVFKKLIFQDKV VFGPTLSNSA AADPIA A Sbjct: 81 NAAGGINGSKIALVIEDEQGKKEEAINVFKKLIFQDKVAMVFGPTLSNSAQAADPIAQGA 140 Query: 119 KVVVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTK 178 K VVFGTSNTADGIT++G + FRNSV EADVLP T++ K G+KKVAV+YGNDD FTK Sbjct: 141 KTVVFGTSNTADGITSIGDYVFRNSVTEADVLPATIQTVAKKAGVKKVAVLYGNDDVFTK 200 Query: 179 SGYDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQ 238 SGYD FK LE KIPVTTTE +AKGDVDFKAQLTKIKA NPDAIV S L E I++Q Sbjct: 201 SGYDNFKKALEDLKIPVTTTETFAKGDVDFKAQLTKIKASNPDAIVLSALIAEGGPIMVQ 260 Query: 239 TRALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGA 298 R LG+ P IGGNG+NS K+F++A+D DN +GSPWS EN TP N FITAY +K+ A Sbjct: 261 ARQLGLNVPVIGGNGMNSVKVFDLARDKADNLWVGSPWSIENHTPENSKFITAYTSKYKA 320 Query: 299 DPDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAV 358 PDQFAAQAYDAMYI A ALK VK SG+L DR A+R ALPAVK GATG FAFR A Sbjct: 321 APDQFAAQAYDAMYIAAKALKAVKFSGSLEADRKAVRDALPAVKHTGATGAFAFRQVTA- 379 Query: 359 AGKQVGFDADQEAIVNIAKGGKFVLLK 385 GK G+DA Q IV++ K GK+ + K Sbjct: 380 RGKPAGYDAVQTPIVSVTKAGKYTIEK 406 >ref|YP_002256922.1| amino acid-binding periplasmic protein (pbp) [Ralstonia solanacearum IPO1609] emb|CAQ58803.1| amino acid-binding periplasmic protein (pbp) [Ralstonia solanacearum IPO1609] Length = 406 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 258/387 (66%), Positives = 295/387 (76%), Gaps = 8/387 (2%) Query: 6 MLKTIPALLIGATLSQAALAA-------DIKLGVAEALTGPAAKYGVAIKNGFTLASEEI 58 M KTI LL+ A + AA+AA DIK+GVAEAL+G AA+YG AI+NGF LA++EI Sbjct: 21 MQKTIKRLLVTAAAAGAAVAAGAASAAQDIKIGVAEALSGGAAQYGAAIRNGFQLAADEI 80 Query: 59 NAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAA 118 NA GG+NG K+ALVIEDEQGKKEEAINVFKKLIFQDKV VFGPTLSNSA AADPIA A Sbjct: 81 NAAGGINGSKIALVIEDEQGKKEEAINVFKKLIFQDKVAMVFGPTLSNSAQAADPIAQGA 140 Query: 119 KVVVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTK 178 K VVFGTSNTADGIT++G + FRNSV EADVLP T++ K G+KKVAV+YGNDD FTK Sbjct: 141 KTVVFGTSNTADGITSIGDYVFRNSVTEADVLPATIQTVAKKAGVKKVAVLYGNDDVFTK 200 Query: 179 SGYDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQ 238 SGYD FK LE KIPVTTTE +AKGDVDFKAQLTKIKA NPDAIV S L E I++Q Sbjct: 201 SGYDNFKKALEDLKIPVTTTETFAKGDVDFKAQLTKIKASNPDAIVLSALIAEGGPIMVQ 260 Query: 239 TRALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGA 298 R LG+ P IGGNG+NS K+F++A+D DN +GSPWS EN TP N FITAY +K+ A Sbjct: 261 ARQLGLNVPVIGGNGMNSVKVFDLARDKADNLWVGSPWSIENHTPENSKFITAYTSKYKA 320 Query: 299 DPDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAV 358 PDQFAAQAYDAMYI A ALK VK SG+L DR A+R ALPAVK GATG FAFR A Sbjct: 321 APDQFAAQAYDAMYIAAKALKVVKFSGSLEADRKAVRDALPAVKHTGATGAFAFRQVTA- 379 Query: 359 AGKQVGFDADQEAIVNIAKGGKFVLLK 385 GK G+DA Q IV++ K GK+ + K Sbjct: 380 RGKPAGYDAVQTPIVSVTKAGKYTIEK 406 >ref|YP_787328.1| ABC transporter substrate-binding protein [Bordetella avium 197N] emb|CAJ50442.1| ABC transporter, substrate-binding protein [Bordetella avium 197N] Length = 384 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 254/386 (65%), Positives = 297/386 (76%), Gaps = 3/386 (0%) Query: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQFNT + + L A L AA AADIKLGVAEAL+G AA+YG +I+NGF LA++EIN Sbjct: 1 MQFNT--RKLLVALAAAGLIPAAHAADIKLGVAEALSGGAAQYGTSIRNGFQLAADEINN 58 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 GGVNGDKL L+IEDEQGKKEEAINVFKKLIF+D VL +FGPTLSNSA AADPIA AAK Sbjct: 59 AGGVNGDKLVLIIEDEQGKKEEAINVFKKLIFKDNVLMIFGPTLSNSAQAADPIAQAAKT 118 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 VVFGTSNTADGIT++G + FRNSV EADVLP T+ G+K VAV+YGNDD FTKSG Sbjct: 119 VVFGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSG 178 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YD FK LE QKIPVT TE +AKGDVDFKAQLTKIK NPDA+V S L E A I++Q R Sbjct: 179 YDNFKKALEDQKIPVTATETFAKGDVDFKAQLTKIKGSNPDALVLSALLAEGAPIMVQAR 238 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTL-MGSPWSAENQTPANKAFITAYKAKFGAD 299 LG+ P IGGNG+NS K+FE+A N L +GSPWS EN+TP N FI AYKAKFG Sbjct: 239 QLGLNVPVIGGNGMNSVKIFELAPGGASNNLWIGSPWSIENKTPQNTKFIEAYKAKFGNA 298 Query: 300 PDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVA 359 PDQF+AQ+YDA++I+A+ALK+ KLSG +A+DR ALR ALP+V+ GATG F FR A A Sbjct: 299 PDQFSAQSYDALHIVAEALKHTKLSGKIAEDRTALRNALPSVQWTGATGPFKFRQANDRA 358 Query: 360 GKQVGFDADQEAIVNIAKGGKFVLLK 385 GK G+DADQ IV++ K GK+V+ K Sbjct: 359 GKPAGYDADQAPIVSVTKDGKYVIEK 384