BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0113.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776324.1| signal transduction protein [Herbaspirillum ... 553 e-156 ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspiril... 240 2e-61 ref|ZP_01307832.1| hypothetical protein RED65_02824 [Oceanobacte... 226 3e-57 ref|YP_002945463.1| signal transduction protein [Variovorax para... 215 7e-54 ref|YP_003052252.1| putative signal transduction protein [Methyl... 205 6e-51 ref|YP_004040812.1| signal transduction protein [Methylovorus sp... 204 9e-51 ref|YP_003812275.1| hypothetical protein HDN1F_30520 [gamma prot... 204 1e-50 ref|ZP_04762613.1| putative signal transduction protein [Acidovo... 199 4e-49 ref|ZP_08328527.1| hypothetical protein IMCC1989_826 [gamma prot... 197 1e-48 ref|NP_899764.1| hypothetical protein CV_0094 [Chromobacterium v... 196 5e-48 >ref|YP_003776324.1| signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64416.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust. Identities = 271/274 (98%), Positives = 272/274 (99%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 MNLEALFQQQTALPSIPKVV+EVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY Sbjct: 1 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA Sbjct: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 Query: 121 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD 180 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD Sbjct: 121 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD 180 Query: 181 VGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATF 240 VGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATF Sbjct: 181 VGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATF 240 Query: 241 PTEVAERLGVRLETFTQEMPPLAELGEGMQELIA 274 P EVAERLGVRLETFTQEMPPL ELGEGMQELIA Sbjct: 241 PAEVAERLGVRLETFTQEMPPLEELGEGMQELIA 274 >ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspirillum seropedicae SmR1] gb|ADJ64122.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 290 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 176/289 (60%), Gaps = 16/289 (5%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 M L++L Q LP++PKVV++++ SFN E +S EIA+++A D LSAK+LRLANS+++ Sbjct: 1 MELKSLVDQPGKLPTVPKVVQQLMASFNAEDISAHEIAQQIATDPALSAKVLRLANSAFF 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 H SRTIGTVDDA+ +LGF+ VR LV+ GM +FK G+DL FWR++L TA+ A+WLA Sbjct: 61 HASRTIGTVDDALRILGFIMVRNLVLGNGMVAAFKNTRGMDLHQFWRHTLYTAVAARWLA 120 Query: 121 KR----GKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGY 176 G+ N D FTVG+MH IGQL +HA +D+ + LD+ R + E++++G+ Sbjct: 121 MHAGMVGEDNGDAVFTVGMMHGIGQLQLHAVAANAVAPLDRHSNVLDSDRAEREKEAWGF 180 Query: 177 DFADVGAELARRWRFPDEFAKVIEAFPQPL-QGEFDPFAAIVHLAAWRARAHENQYSDEE 235 +ADV AELA W FPD + + P PL G FD AA VHL W AR DE Sbjct: 181 HYADVSAELAAIWHFPDALVTALRSVPDPLGAGRFDRAAAWVHLGGWAARVAILSQDDEN 240 Query: 236 LAATFPTEVAERLGV-----------RLETFTQEMPPLAELGEGMQELI 273 AT+P V ++LGV + + MP L EL G+ ++ Sbjct: 241 AQATYPAAVGKKLGVDPAWMPLLVKHDPDKAERAMPSLGELAAGLDAML 289 >ref|ZP_01307832.1| hypothetical protein RED65_02824 [Oceanobacter sp. RED65] gb|EAT11569.1| hypothetical protein RED65_02824 [Oceanobacter sp. RED65] Length = 275 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 181/273 (66%), Gaps = 2/273 (0%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 M+ +A+F + LPSIPKVV+++IE+FN++ +++IA K++ D VL+AK+LRLANS++Y Sbjct: 1 MDFDAIFAKSPPLPSIPKVVQDLIETFNHDDFDMDDIATKISMDPVLTAKVLRLANSAHY 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 VSRTIG+ +A ++LGF T+RTLV+++G++G+ K P D + +W + A +A+WLA Sbjct: 61 GVSRTIGSTSEASVLLGFSTLRTLVLASGISGAIKTPPEFDREGYWNDNFAVAAIARWLA 120 Query: 121 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD 180 +N + AFT G++H+IG+L++ +P++A +V+K A +RLD+E GY++A+ Sbjct: 121 PYCGINGETAFTAGMLHSIGELILQLVLPDEAKKVEK-AMQFGGKRLDLENAMLGYNYAE 179 Query: 181 VGAELARRWRFPDEFAKVIEAFPQPLQGE-FDPFAAIVHLAAWRARAHENQYSDEELAAT 239 +GAELA+RW+FP++ I P PL + P A ++H++ + +H+ + SD+E+ Sbjct: 180 IGAELAKRWKFPNDIVNGICQHPNPLNFDPISPLAGLLHISCYIHESHKQKLSDDEILED 239 Query: 240 FPTEVAERLGVRLETFTQEMPPLAELGEGMQEL 272 FPT VA + + ++ L ++ GM L Sbjct: 240 FPTTVAHAIDMDSVNAKADIEQLHDVESGMDLL 272 >ref|YP_002945463.1| signal transduction protein [Variovorax paradoxus S110] gb|ACS20197.1| putative signal transduction protein [Variovorax paradoxus S110] Length = 275 Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 113/277 (40%), Positives = 172/277 (62%), Gaps = 5/277 (1%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 M L+ LF LP++PKVV ++IE NE ++ +A+K+ DQVL+A++LR+ANS Y+ Sbjct: 1 MTLDELFTDSHLLPTVPKVVFDLIELLRNEDAAVSVVARKIELDQVLTARVLRMANSPYF 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 + R I ++ DA+ +LGF ++R+LVVS+G+ G+F+K+ GV+L FW +SL A VA++LA Sbjct: 61 GLRRKILSIQDAIQLLGFSSIRSLVVSSGLTGTFRKVEGVNLPAFWSHSLRVAAVARYLA 120 Query: 121 -KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDAR-RLDVERKSFGYDF 178 K +++ AFTVG MHAIG L+M AG +Q + A P D RL+VER+ FG+ + Sbjct: 121 GKTRRVDQSLAFTVGSMHAIGHLIM-AGAMKQPMAELNAAHPFDRMGRLEVERQKFGFHY 179 Query: 179 ADVGAELARRWRFPDEFAKVIEAFPQPLQGE-FDPFAAIVHLAAWRARAHENQYSDEELA 237 VGA LA RW F EF + +F P++ E DP A+++HLA WR + Sbjct: 180 GQVGARLAARWEFAPEFVSALSSFANPMEAEQVDPLASVLHLAVWRVALEREGLRIGDAQ 239 Query: 238 ATFPTEVAERLGVRLETFTQEMPPLAELGEGMQELIA 274 +P + A+ +G+ E Q+MP EL ++ +IA Sbjct: 240 HVWPAQPADAIGLS-EDVMQDMPAPRELASDLESMIA 275 >ref|YP_003052252.1| putative signal transduction protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51725.1| putative signal transduction protein [Methylovorus glucosetrophus SIP3-4] Length = 275 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 110/253 (43%), Positives = 158/253 (62%), Gaps = 2/253 (0%) Query: 3 LEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHV 62 ++ F LP++PKVV+EVI +NE V + E+ ++A DQVLSAK+LR+ANSSYY V Sbjct: 4 VDKFFHSILNLPTLPKVVQEVILMLDNEDVDLGELGARIAHDQVLSAKVLRMANSSYYGV 63 Query: 63 SRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLAKR 122 SRTI T+ DA+ ++G +RTLV+++G+ G+F LPG+D+ FWR+SL TA VA +++ Sbjct: 64 SRTIKTIPDAISVIGVSKLRTLVIASGVTGTFTTLPGLDINRFWRHSLVTAAVAGKISQE 123 Query: 123 GKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDA-RRLDVERKSFGYDFADV 181 K ++ A+ LMH+IGQL++H P QA ++D+ L R +E + G D V Sbjct: 124 LKKPTETAYLAALMHSIGQLLIHIVFPIQAAEIDEECKGLSVIERKALENATLGLDHCQV 183 Query: 182 GAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATFP 241 GAELARRW FP++ +VI + PL A +V +AA A EN +A T Sbjct: 184 GAELARRWNFPEDIQRVIRYYADPLDKMACDLAPVVFMAAHIAFGLENLEESAHIAETLK 243 Query: 242 TEVAERLGV-RLE 253 EVA+ LGV R+E Sbjct: 244 PEVAKALGVDRIE 256 >ref|YP_004040812.1| signal transduction protein [Methylovorus sp. MP688] gb|ADQ85576.1| putative signal transduction protein [Methylovorus sp. MP688] Length = 275 Score = 204 bits (520), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 109/253 (43%), Positives = 158/253 (62%), Gaps = 2/253 (0%) Query: 3 LEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHV 62 ++ F LP++PKVV+EVI +NE V + ++ ++A DQVLSAK+LR+ANSSYY V Sbjct: 4 VDKFFHSILNLPTLPKVVQEVILMLDNEDVDLSQLGARIAHDQVLSAKVLRMANSSYYGV 63 Query: 63 SRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLAKR 122 SRTI T+ DA+ ++G +RTLV+++G+ G+F LPG+D+ FWR+SL TA VA +++ Sbjct: 64 SRTIKTIPDAISVIGVSKLRTLVIASGVTGTFTTLPGLDINRFWRHSLVTAAVAGKISQE 123 Query: 123 GKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDA-RRLDVERKSFGYDFADV 181 K ++ A+ LMH+IGQL++H P QA ++D+ L R +E + G D V Sbjct: 124 LKKPTETAYLAALMHSIGQLLIHIVFPIQAAEIDEECKGLSVIERKALENATLGLDHCQV 183 Query: 182 GAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATFP 241 GAELARRW FP++ +VI + PL A +V +AA A EN +A T Sbjct: 184 GAELARRWNFPEDIQRVIRYYADPLDKMACDLAPVVFMAAHIAFGLENLEESAHIAETLK 243 Query: 242 TEVAERLGV-RLE 253 EVA+ LGV R+E Sbjct: 244 PEVAKALGVDRIE 256 >ref|YP_003812275.1| hypothetical protein HDN1F_30520 [gamma proteobacterium HdN1] emb|CBL46635.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 283 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 169/272 (62%), Gaps = 2/272 (0%) Query: 4 EALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVS 63 ++ F + +PS+ KVV+E+I +F++ +I+ IAKK+ DQ LSAK+LR+ANS+ Y Sbjct: 12 KSFFDRALEMPSMSKVVQELITTFSDPKANIDSIAKKIRLDQALSAKVLRMANSARYGAG 71 Query: 64 RTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLAKRG 123 R + ++D A++ LGF VRTLVV++G+ G+FKK+P +D+ +WR + A ++K +AK Sbjct: 72 RKVASIDSAIVTLGFDAVRTLVVASGVTGAFKKVPHLDMMAYWRETFLVANISKSIAKHA 131 Query: 124 KLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFADVGA 183 ++ + AFT GLMH++G ++M+ E +++ + A R+++ER FGYD+A+VGA Sbjct: 132 GMDGEAAFTCGLMHSVGMVLMYLSDAENMHRIETLVKN-GANRVELERSQFGYDYAEVGA 190 Query: 184 ELARRWRFPDEFAKVI-EAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATFPT 242 ELA+RW FPD I + P DP+A IV+LA +A + ++ +FPT Sbjct: 191 ELAKRWNFPDNITHAIGQHTTVPTSTGIDPYALIVYLACNLVKATLHNVPKPQILGSFPT 250 Query: 243 EVAERLGVRLETFTQEMPPLAELGEGMQELIA 274 E+ + L + L +E+ L + + +++A Sbjct: 251 ELTQPLNLNLVALMEELDKLLAQEDDIDQVLA 282 >ref|ZP_04762613.1| putative signal transduction protein [Acidovorax delafieldii 2AN] gb|EER60586.1| putative signal transduction protein [Acidovorax delafieldii 2AN] Length = 275 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 159/261 (60%), Gaps = 1/261 (0%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 M L AL ALPS+P+ V ++ +E S+ + + + D L+A++L +AN+ + Sbjct: 1 MELNALLAHPVALPSLPRAVALLMTELAHEEPSLRRVNQVIGTDPALTARLLEMANAPAF 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 + R I + +A+ +LG + +RTLV S + + + +PG++++ FWRYSL+TA +A+ LA Sbjct: 61 QMQRQIAGIPEALALLGAVQLRTLVSSAPLGTTSRSVPGINMQQFWRYSLNTAKLARSLA 120 Query: 121 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD 180 N A+T GL+HA+G+L++H PE+ ++ + PLD RR +E++ FGY + + Sbjct: 121 GIVHHNQIAAYTAGLLHAVGELLLHLAEPEKVQSINTLVPPLDLRRSKIEQRIFGYCYGN 180 Query: 181 VGAELARRWRFPDEFAKVIEAFPQPLQGE-FDPFAAIVHLAAWRARAHENQYSDEELAAT 239 + A LARRW+FP+ +E PL ++P A ++HLA+WRARA E ++E+A + Sbjct: 181 ISAGLARRWQFPEVVVDALEHQNAPLDNNAYEPLAGVIHLASWRARAREADMGEKEMAVS 240 Query: 240 FPTEVAERLGVRLETFTQEMP 260 FP EV LG+ ++ Q+ P Sbjct: 241 FPGEVGLVLGLDIDMVLQQDP 261 >ref|ZP_08328527.1| hypothetical protein IMCC1989_826 [gamma proteobacterium IMCC1989] gb|EGG95329.1| hypothetical protein IMCC1989_826 [gamma proteobacterium IMCC1989] Length = 273 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 173/277 (62%), Gaps = 7/277 (2%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 M+L L +P+IPKVV+E+I+SF +E+V E+A KL+ DQ ++AK+LR+ANSS Y Sbjct: 1 MDLNHLISNAQHMPNIPKVVQELIQSFGDENVDSGEVAAKLSKDQAMTAKVLRMANSSKY 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 RT+G+V+DAV++LGF +RT+V+++G+ +F G ++K FW S A ++KW+A Sbjct: 61 GGHRTVGSVNDAVVLLGFNALRTMVLASGLTSAFPTPEGFNIKEFWVKSFTVASISKWIA 120 Query: 121 KR-GKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFA 179 K + + AFT G++H IG L+ H + ++A ++D+V A R+++E G++F Sbjct: 121 KHVPDTDVEIAFTCGMIHDIGGLLTHILVNDEAQEIDRVVEK-GANRIEMEDSHLGFNFT 179 Query: 180 DVGAELARRWRFPDEFAKVI--EAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELA 237 + G+ELA RW+FP E + + PQ G + A ++ +A++ H+++ S E L Sbjct: 180 EAGSELAHRWKFPQEIVDGVKHQMDPQTDDG-YKKLAGVLLIASY-LYDHQDE-SQETLV 236 Query: 238 ATFPTEVAERLGVRLETFTQEMPPLAELGEGMQELIA 274 FPTE A++LG+ + + + + EL G++EL+ Sbjct: 237 TNFPTEHAKKLGINVVSMLDSISEIKELDSGIEELLG 273 >ref|NP_899764.1| hypothetical protein CV_0094 [Chromobacterium violaceum ATCC 12472] gb|AAQ57773.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 273 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 106/266 (39%), Positives = 159/266 (59%), Gaps = 4/266 (1%) Query: 1 MNLEALFQQQTA-LPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSY 59 M + +F + + LP +PKVV+E++ SF+ V+I +I + DQVLSA++LRLANS+ Sbjct: 1 MQVGEIFDKASGKLPMVPKVVQELVASFHRSDVNINDITDMVMHDQVLSARVLRLANSAR 60 Query: 60 YHVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWL 119 + SR +G++DDAV++LGF +R LV+++G+ G+ + G D+K FW S A AK L Sbjct: 61 FGSSRRVGSLDDAVILLGFDNLRVLVIASGVTGATLGISGFDMKAFWLRSFAMANTAKLL 120 Query: 120 AKRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDK-VAGPLDARRLDVERKSFGYDF 178 AK L + +T GL+ IG+LV++ +PEQA Q+D+ VAG A R+ ER G D Sbjct: 121 AKLAGLEAQLGYTCGLLADIGELVLYVAVPEQAQQIDRIVAGG--AERIATERMLLGLDL 178 Query: 179 ADVGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAA 238 ++GAELARRW FPDE + I L E P+A ++ L ++ + S E++ A Sbjct: 179 TELGAELARRWNFPDEIQEAIYRQHDLLNDEASPYALLIGLTSFVVSGFRHGMSPEDMLA 238 Query: 239 TFPTEVAERLGVRLETFTQEMPPLAE 264 P V ERLG+ E E+ L + Sbjct: 239 GLPDGVLERLGLDRERIAGEIDALQQ 264