BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0105.p (562 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776316.1| peptide chain release factor 3 [Herbaspirill... 1095 0.0 ref|YP_001352764.1| peptide chain release factor 3 [Janthinobact... 1006 0.0 ref|YP_004752077.1| peptide chain release factor 3 [Collimonas f... 999 0.0 ref|YP_001099253.1| peptide chain release factor 3 [Herminiimona... 996 0.0 ref|ZP_04577775.1| peptide chain release factor 3 [Oxalobacter f... 950 0.0 ref|ZP_04579922.1| peptide chain release factor RF-3 [Oxalobacte... 938 0.0 ref|YP_003524933.1| peptide chain release factor 3 [Sideroxydans... 924 0.0 ref|YP_004847617.1| peptide chain release factor 3 [Pseudogulben... 905 0.0 ref|ZP_03697338.1| peptide chain release factor 3 [Lutiella nitr... 904 0.0 ref|ZP_04600894.1| hypothetical protein GCWU000324_00350 [Kingel... 879 0.0 >ref|YP_003776316.1| peptide chain release factor 3 [Herbaspirillum seropedicae SmR1] gb|ADJ64408.1| peptide chain release factor 3 (RF-3) protein [Herbaspirillum seropedicae SmR1] Length = 530 Score = 1095 bits (2831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/530 (99%), Positives = 530/530 (100%) Query: 33 LIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK 92 +IAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK Sbjct: 1 MIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK 60 Query: 93 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI 152 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI Sbjct: 61 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI 120 Query: 153 KLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH 212 KLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH Sbjct: 121 KLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH 180 Query: 213 LLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDD 272 LLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDD Sbjct: 181 LLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDD 240 Query: 273 FLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQA 332 FLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQA Sbjct: 241 FLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQA 300 Query: 333 NMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDII 392 NMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDII Sbjct: 301 NMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDII 360 Query: 393 GLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAV 452 GLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAV Sbjct: 361 GLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAV 420 Query: 453 QVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADF 512 QVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADF Sbjct: 421 QVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADF 480 Query: 513 EKSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKLD 562 EKSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKLD Sbjct: 481 EKSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKLD 530 >ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] gb|ABR88278.1| peptide chain release factor RF-3 [Janthinobacterium sp. Marseille] Length = 556 Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/555 (88%), Positives = 509/555 (91%), Gaps = 5/555 (0%) Query: 7 ELPDVASSAADDASDAASGNRKVSTDLIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSG 66 ELP +D A A R VS+DLI EV RRRTFGIISHPDAGKTTLTEKLLLFSG Sbjct: 6 ELP-----TSDSAETEAFEPRTVSSDLINSEVARRRTFGIISHPDAGKTTLTEKLLLFSG 60 Query: 67 AIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSED 126 AIQLAGTVK RKSGRHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSED Sbjct: 61 AIQLAGTVKGRKSGRHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSED 120 Query: 127 TYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDEL 186 TYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRD LELLDEL Sbjct: 121 TYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDEL 180 Query: 187 ESVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEM 246 ESVLKI+CAPVTWPIGMGKNFRGVYHLLRDEIMLF AG E+A+ E+IKGIDNP+LAEM Sbjct: 181 ESVLKIECAPVTWPIGMGKNFRGVYHLLRDEIMLFAAGNEKADQTFEVIKGIDNPRLAEM 240 Query: 247 FPLEIEQLKMEVELVHGASHPFNLDDFLAGVQTPVFFGSAINNFGVREILDALLDWAPGP 306 FP EIEQLKMEVELVHGASHPF LD FL G +TPVFFGSAINNFGVREIL+ALLDWA P Sbjct: 241 FPQEIEQLKMEVELVHGASHPFELDAFLNGTRTPVFFGSAINNFGVREILNALLDWAQPP 300 Query: 307 GGRDATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRD 366 RDATVR VKPTE PFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMK+KHLRLNR+ Sbjct: 301 RERDATVRSVKPTELPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKIKHLRLNRE 360 Query: 367 IKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFR 426 IKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE+LQFTGIPYFAPDFFR Sbjct: 361 IKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGELLQFTGIPYFAPDFFR 420 Query: 427 VARIRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGV 486 RIRNPLKIKQLHKGLQQLGEEGA+QVFKPV SDLILG VGVLQFEVVASRLLNEYGV Sbjct: 421 SVRIRNPLKIKQLHKGLQQLGEEGAIQVFKPVNSSDLILGGVGVLQFEVVASRLLNEYGV 480 Query: 487 DAVFEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNMAYLASSGVNLRLTQERW 546 DAVFEGTSISSARWI+CDDKK LA+FEKSSAG NLA DAAGN+AYLASSGVNLRLTQERW Sbjct: 481 DAVFEGTSISSARWITCDDKKMLAEFEKSSAGHNLAHDAAGNLAYLASSGVNLRLTQERW 540 Query: 547 PEITFHATREHAAKL 561 P +TFH TREHA KL Sbjct: 541 PGVTFHETREHAVKL 555 >ref|YP_004752077.1| peptide chain release factor 3 [Collimonas fungivorans Ter331] gb|AEK61254.1| Peptide chain release factor 3 [Collimonas fungivorans Ter331] Length = 559 Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/562 (85%), Positives = 515/562 (91%), Gaps = 3/562 (0%) Query: 1 MQEPSNELPDVASSAADDASDAASGNRKVSTDLIAREVKRRRTFGIISHPDAGKTTLTEK 60 MQEP +E P++ S +DA+D + N VS + IA EV RRRTFGIISHPDAGKTTLTEK Sbjct: 1 MQEPVSEQPNL-SGVDNDAADIVAHN--VSVEQIATEVARRRTFGIISHPDAGKTTLTEK 57 Query: 61 LLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGH 120 LLLFSGAIQLAGTVK RKSGRHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLDTPGH Sbjct: 58 LLLFSGAIQLAGTVKGRKSGRHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLDTPGH 117 Query: 121 QDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDSL 180 QDFSEDTYRVLTAVDSALMVIDAAKGVE QTIKLLNVCRMRNTPIIT MNK+DRETRD L Sbjct: 118 QDFSEDTYRVLTAVDSALMVIDAAKGVETQTIKLLNVCRMRNTPIITLMNKMDRETRDPL 177 Query: 181 ELLDELESVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIKGIDN 240 ELLDELESVLKIQCAPVTWPIGMGK FRGVYHLLRDEI+LF AG ++A+ E+IKGIDN Sbjct: 178 ELLDELESVLKIQCAPVTWPIGMGKTFRGVYHLLRDEILLFAAGNDKADQTFEVIKGIDN 237 Query: 241 PKLAEMFPLEIEQLKMEVELVHGASHPFNLDDFLAGVQTPVFFGSAINNFGVREILDALL 300 P+L EMFP EIEQL+MEVELVHGASHPF+ + FLAGVQTPVFFGSAINNFG+REIL+AL+ Sbjct: 238 PRLDEMFPREIEQLRMEVELVHGASHPFDQEAFLAGVQTPVFFGSAINNFGIREILNALI 297 Query: 301 DWAPGPGGRDATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLKH 360 DWA PG RDATVR V+P E FSGFVFKIQANMDPAHRDRIAFLRVCSG F+RGMK+KH Sbjct: 298 DWAQPPGSRDATVRTVEPKEASFSGFVFKIQANMDPAHRDRIAFLRVCSGHFQRGMKIKH 357 Query: 361 LRLNRDIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYF 420 LRLNR+IKVS+VVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYF Sbjct: 358 LRLNREIKVSNVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYF 417 Query: 421 APDFFRVARIRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASRL 480 APDFFR RIRNPLKIKQLHKGLQQLGEEGA+QVFKPVT SDL+LG VGVLQFEVVASRL Sbjct: 418 APDFFRSVRIRNPLKIKQLHKGLQQLGEEGAIQVFKPVTSSDLVLGGVGVLQFEVVASRL 477 Query: 481 LNEYGVDAVFEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNMAYLASSGVNLR 540 LNEYGVDAVFEGTSISSARWI+CDDKK LADFEKSSAG N+A DAAGNMAYLASSGVNLR Sbjct: 478 LNEYGVDAVFEGTSISSARWITCDDKKILADFEKSSAGHNVAYDAAGNMAYLASSGVNLR 537 Query: 541 LTQERWPEITFHATREHAAKLD 562 LTQERWP++ FH TREHA KL+ Sbjct: 538 LTQERWPQVVFHETREHAVKLN 559 >ref|YP_001099253.1| peptide chain release factor 3 [Herminiimonas arsenicoxydans] emb|CAL61126.1| peptide chain release factor 3 (RF-3) [Herminiimonas arsenicoxydans] Length = 564 Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/533 (89%), Positives = 499/533 (93%) Query: 29 VSTDLIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWM 88 VS +LIA EV RRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVK RKS RHATSDWM Sbjct: 31 VSAELIASEVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKGRKSARHATSDWM 90 Query: 89 EIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE 148 +IEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE Sbjct: 91 DIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE 150 Query: 149 EQTIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFR 208 QTIKLLNVCRMRNTPIITFMNKLDRETRD LELLDELESVLKI+CAPVTWPIGMGKNFR Sbjct: 151 TQTIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDELESVLKIECAPVTWPIGMGKNFR 210 Query: 209 GVYHLLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPF 268 GVYHLLRDEIMLF G E+A+ E++KGIDNP+LAEMFP EIEQLKMEVELVHGASHPF Sbjct: 211 GVYHLLRDEIMLFAPGSEKADQTFEVVKGIDNPRLAEMFPQEIEQLKMEVELVHGASHPF 270 Query: 269 NLDDFLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVF 328 +LD FL G +TPVFFGSAINNFGVREIL+ALLDWA P RDATVR VKP E PFSGFVF Sbjct: 271 DLDAFLNGTRTPVFFGSAINNFGVREILNALLDWAQPPRERDATVRSVKPIELPFSGFVF 330 Query: 329 KIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYA 388 KIQANMDPAHRDRIAFLRVCSGRFERGMK+KHLRLNR+IKVSSVVTFMASSREQVEEAYA Sbjct: 331 KIQANMDPAHRDRIAFLRVCSGRFERGMKVKHLRLNREIKVSSVVTFMASSREQVEEAYA 390 Query: 389 GDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGE 448 GDIIGLPNHGNMQIGDSFSEGE+LQFTGIPYFAPDFFR RIRNPLKIKQLHKGLQQLGE Sbjct: 391 GDIIGLPNHGNMQIGDSFSEGELLQFTGIPYFAPDFFRAVRIRNPLKIKQLHKGLQQLGE 450 Query: 449 EGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKK 508 EGA+QVFKPV SDLILG VGVLQFEVVASRLLNEYGVDAVFEGTSISSARWI+CDDKK Sbjct: 451 EGAIQVFKPVNSSDLILGGVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWITCDDKKM 510 Query: 509 LADFEKSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKL 561 LADFE+SSAG NL+ DAAGN+AYLASSGVNLRLTQERWP +TFH TREHAAKL Sbjct: 511 LADFERSSAGHNLSHDAAGNLAYLASSGVNLRLTQERWPGVTFHETREHAAKL 563 >ref|ZP_04577775.1| peptide chain release factor 3 [Oxalobacter formigenes HOxBLS] gb|EEO28737.1| peptide chain release factor 3 [Oxalobacter formigenes HOxBLS] Length = 555 Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/557 (82%), Positives = 501/557 (89%), Gaps = 8/557 (1%) Query: 6 NELPDVASSAADDASDAASGNRKVSTDLIAREVKRRRTFGIISHPDAGKTTLTEKLLLFS 65 +E P VA A ++ D S IA EV RRRTFGIISHPDAGKTTLTEKLLLFS Sbjct: 7 SENPAVAKEATLESKDNLSKK-------IALEVARRRTFGIISHPDAGKTTLTEKLLLFS 59 Query: 66 GAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSE 125 GAIQLAGTVKARKS RHATSDWM+IEKQRGISVASSVMQFEYRDH++NLLDTPGHQDFSE Sbjct: 60 GAIQLAGTVKARKSARHATSDWMDIEKQRGISVASSVMQFEYRDHIINLLDTPGHQDFSE 119 Query: 126 DTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDE 185 DTYRVLTAVD+ALMVIDAA+GVE QTIKLL VCRMRNTPI+TFMNKLDRETRDSLELLDE Sbjct: 120 DTYRVLTAVDTALMVIDAARGVEAQTIKLLEVCRMRNTPILTFMNKLDRETRDSLELLDE 179 Query: 186 LESVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIKGIDNPKLAE 245 +E+VLKI+C P+TWPIGMGKNFRGVYHLL DE+MLF G E+A+ E+IKGIDNP+L E Sbjct: 180 VETVLKIRCTPITWPIGMGKNFRGVYHLLNDEVMLFAPGNEKADQAFEVIKGIDNPRLTE 239 Query: 246 MFPLEIEQLKMEVELVHGASHPFNLDDFLAGVQTPVFFGSAINNFGVREILDALLDWAPG 305 MFPLE+EQLKMEVELV GAS+PF L++FLAG TPVFFGSAINNFGVRE+L+ALLDWA Sbjct: 240 MFPLEMEQLKMEVELVKGASNPFVLEEFLAGTLTPVFFGSAINNFGVREVLNALLDWAQP 299 Query: 306 PGGRDATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNR 365 P GR+ATVREV+PTE FSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGM+LKHLRLNR Sbjct: 300 PLGRNATVREVQPTEPAFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMRLKHLRLNR 359 Query: 366 DIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFF 425 +IKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE LQFTGIPYFAP+ F Sbjct: 360 EIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEALQFTGIPYFAPEIF 419 Query: 426 RVARIRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYG 485 R RIRNPLK+KQLHKGLQQLGEEGAVQVFKPV GSDLILGAVGVLQFEVVASRL+NEYG Sbjct: 420 RSVRIRNPLKVKQLHKGLQQLGEEGAVQVFKPVLGSDLILGAVGVLQFEVVASRLMNEYG 479 Query: 486 VDAVFEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNMAYLASSGVNLRLTQER 545 VDAVFEGTSISSARWI+ +DK+ L+DFEKS A N+A DAAGN+ YLA+SGVNLRLT+ER Sbjct: 480 VDAVFEGTSISSARWITAEDKRILSDFEKSLA-HNVAYDAAGNLTYLATSGVNLRLTEER 538 Query: 546 WPEITFHATREHAAKLD 562 WP++ FHATREH+ L+ Sbjct: 539 WPKLKFHATREHSVSLN 555 >ref|ZP_04579922.1| peptide chain release factor RF-3 [Oxalobacter formigenes OXCC13] gb|EEO30895.1| peptide chain release factor RF-3 [Oxalobacter formigenes OXCC13] Length = 560 Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/563 (80%), Positives = 498/563 (88%), Gaps = 7/563 (1%) Query: 1 MQEPSN-ELPDVASSAADDASDAASGNRKVSTDLIAREVKRRRTFGIISHPDAGKTTLTE 59 M PS+ E P V A + + +RK IAREV RRRTFGIISHPDAGKTTLTE Sbjct: 1 MTVPSDPENPGVVDEVASTSESRDNLSRK-----IAREVARRRTFGIISHPDAGKTTLTE 55 Query: 60 KLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPG 119 KLLLFSGAIQ+AGTVKARKS RHATSDWMEIEKQRGISVASSVMQFEYRDH+VNLLDTPG Sbjct: 56 KLLLFSGAIQMAGTVKARKSARHATSDWMEIEKQRGISVASSVMQFEYRDHIVNLLDTPG 115 Query: 120 HQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDS 179 HQDFSEDTYRVLTAVD+ALMVIDA GVE QTIKLL VCRMRNTPIITFMNKLDRE RD Sbjct: 116 HQDFSEDTYRVLTAVDTALMVIDAGHGVEAQTIKLLEVCRMRNTPIITFMNKLDREARDP 175 Query: 180 LELLDELESVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIKGID 239 LELLDELE+VL I+ PVTWPIGMGKNFRGVYHLL DEIMLF G E+A+ E+IKGID Sbjct: 176 LELLDELETVLNIRSTPVTWPIGMGKNFRGVYHLLNDEIMLFAPGNEKADQTFEVIKGID 235 Query: 240 NPKLAEMFPLEIEQLKMEVELVHGASHPFNLDDFLAGVQTPVFFGSAINNFGVREILDAL 299 NP+L EMFP+E+EQL+MEVELV GAS+PF L++FLAG TPVFFGSAINNFGVRE+L+AL Sbjct: 236 NPRLMEMFPMEMEQLQMEVELVKGASNPFVLEEFLAGTLTPVFFGSAINNFGVREVLNAL 295 Query: 300 LDWAPGPGGRDATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLK 359 LDWA P GR+A R+V+PTE PFSGFVFKIQANMDPAHRDRIAF+RV SGRFERGM+LK Sbjct: 296 LDWARPPLGREAIQRKVEPTETPFSGFVFKIQANMDPAHRDRIAFMRVTSGRFERGMRLK 355 Query: 360 HLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPY 419 HLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE+LQFTGIP+ Sbjct: 356 HLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEVLQFTGIPF 415 Query: 420 FAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASR 479 FAP+ FR RIRNPLK+KQLHKGLQQLGEEGAVQVFKPV GSDLILGAVGVLQFEVVASR Sbjct: 416 FAPEIFRSVRIRNPLKVKQLHKGLQQLGEEGAVQVFKPVMGSDLILGAVGVLQFEVVASR 475 Query: 480 LLNEYGVDAVFEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNMAYLASSGVNL 539 L+NEYGVDAVFE TS +SARW+SC+DKK L+DFE+S A N+A DAAGNM YLA+SGVNL Sbjct: 476 LMNEYGVDAVFESTSTTSARWVSCEDKKMLSDFERSLA-HNVAYDAAGNMTYLATSGVNL 534 Query: 540 RLTQERWPEITFHATREHAAKLD 562 RLT+ERWP++ FHATREH+A L+ Sbjct: 535 RLTEERWPKVRFHATREHSASLN 557 >ref|YP_003524933.1| peptide chain release factor 3 [Sideroxydans lithotrophicus ES-1] gb|ADE12546.1| peptide chain release factor 3 [Sideroxydans lithotrophicus ES-1] Length = 546 Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/533 (82%), Positives = 484/533 (90%), Gaps = 1/533 (0%) Query: 29 VSTDLIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWM 88 VS DLIAREV RRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAG VKARKSGRHATSD++ Sbjct: 15 VSRDLIAREVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGAVKARKSGRHATSDFL 74 Query: 89 EIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE 148 EIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE Sbjct: 75 EIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE 134 Query: 149 EQTIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFR 208 QTIKLL+VCRMR+TPI+TFMNK+DRE RD LELLDE+ESVLKIQCAPVTWP+GMGK FR Sbjct: 135 AQTIKLLDVCRMRDTPILTFMNKMDREVRDPLELLDEVESVLKIQCAPVTWPLGMGKTFR 194 Query: 209 GVYHLLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPF 268 GVYHLLRDEI+LF GEERA+G VE+IKGI NP LAE FPLEIEQLKMEVELVHGASHPF Sbjct: 195 GVYHLLRDEILLFTPGEERADGEVEVIKGIANPILAERFPLEIEQLKMEVELVHGASHPF 254 Query: 269 NLDDFLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVF 328 +L FLAG QTPVFFGSAINNFGVREIL+ALL+WAP P RDATVR V PTE FSGFVF Sbjct: 255 DLQAFLAGKQTPVFFGSAINNFGVREILNALLEWAPAPRERDATVRAVSPTEPKFSGFVF 314 Query: 329 KIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYA 388 KIQANMD HRDRIAFLRVCSG FERGMK+KHLR+ ++I+VSSVVTFMASSRE VEEA+A Sbjct: 315 KIQANMDANHRDRIAFLRVCSGHFERGMKMKHLRIGKEIRVSSVVTFMASSRELVEEAFA 374 Query: 389 GDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGE 448 GDIIGLPNHGNMQIGD+FSEGE LQ+TGIPYFAPD F+ RIRNPLK+KQLHKGLQQLGE Sbjct: 375 GDIIGLPNHGNMQIGDTFSEGEALQYTGIPYFAPDHFQTVRIRNPLKVKQLHKGLQQLGE 434 Query: 449 EGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKK 508 EGAVQVFKP G DLILGAVG+LQF+VVASRL EYGVDA+FEG+++++ARW++CDD K Sbjct: 435 EGAVQVFKPADGGDLILGAVGMLQFDVVASRLAGEYGVDAMFEGSAVNTARWVTCDDAKI 494 Query: 509 LADFEKSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKL 561 ADF+++ + NLAIDAAGN+AYLA + VNL LTQERWP++ FH TREHA KL Sbjct: 495 FADFQRALS-HNLAIDAAGNLAYLAPNKVNLNLTQERWPKVVFHTTREHAVKL 546 >ref|YP_004847617.1| peptide chain release factor 3 [Pseudogulbenkiania sp. NH8B] dbj|BAK77203.1| peptide chain release factor 3 [Pseudogulbenkiania sp. NH8B] Length = 536 Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/529 (81%), Positives = 476/529 (89%), Gaps = 1/529 (0%) Query: 34 IAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQ 93 IA EV RRRTF IISHPDAGKTTLTEKLLLFSGAIQ+AGTVK RK+G+ ATSDWMEIEKQ Sbjct: 8 IAEEVARRRTFAIISHPDAGKTTLTEKLLLFSGAIQMAGTVKGRKTGKFATSDWMEIEKQ 67 Query: 94 RGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIK 153 RGISVASSVMQF+YRDH VNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIK Sbjct: 68 RGISVASSVMQFDYRDHTVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIK 127 Query: 154 LLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYHL 213 LLNVCR+R+TPI+TFMNK DRE RDSLELLDE+ESVLKI+CAPVTWPIGMGKNFRGVYH+ Sbjct: 128 LLNVCRLRSTPIVTFMNKYDREVRDSLELLDEVESVLKIRCAPVTWPIGMGKNFRGVYHM 187 Query: 214 LRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDDF 273 LRDE++LF+AG E+ ++E+I+GIDNP+L E+FPLE+EQL+ME+ELV GAS+ FNLD+F Sbjct: 188 LRDEVLLFEAGAEKITLDLEVIQGIDNPRLDELFPLEMEQLRMEIELVKGASNEFNLDEF 247 Query: 274 LAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQAN 333 LAG TPVFFGSAINNFGVREIL+AL+DWAP P RDAT+REV PTEEPFSGFVFKIQAN Sbjct: 248 LAGELTPVFFGSAINNFGVREILNALIDWAPMPATRDATLREVAPTEEPFSGFVFKIQAN 307 Query: 334 MDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIG 393 MDP HRDRIAFLRVCSGRFERGMK+KHLRLNRDI SSVVTFM+ RE VEEA+AGDIIG Sbjct: 308 MDPKHRDRIAFLRVCSGRFERGMKMKHLRLNRDIAASSVVTFMSHDREIVEEAFAGDIIG 367 Query: 394 LPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAVQ 453 +PNHGN+QIGDSFSEGE L FTGIP+FAP+ FR RIRNPLKIKQL KGLQQLGEEGAVQ Sbjct: 368 IPNHGNIQIGDSFSEGEQLAFTGIPFFAPELFRSVRIRNPLKIKQLQKGLQQLGEEGAVQ 427 Query: 454 VFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADFE 513 VFKP G DLILGAVGVLQFEVVASRL EYGVDAVFE SI SARW+SC+D+KKL +FE Sbjct: 428 VFKPHNGGDLILGAVGVLQFEVVASRLAAEYGVDAVFESASIWSARWVSCEDRKKLEEFE 487 Query: 514 KSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKLD 562 K + NL+ DA GN+AYLA + VNL+LTQERWP ITFH TREHA KL+ Sbjct: 488 KGNLN-NLSTDAGGNLAYLAPNRVNLQLTQERWPAITFHETREHAVKLN 535 >ref|ZP_03697338.1| peptide chain release factor 3 [Lutiella nitroferrum 2002] gb|EEG09824.1| peptide chain release factor 3 [Lutiella nitroferrum 2002] Length = 536 Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/529 (81%), Positives = 476/529 (89%), Gaps = 1/529 (0%) Query: 34 IAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQ 93 IA EV RRRTF IISHPDAGKTTLTEKLLLFSGAIQ+AGTVK +K+G+ ATSDWMEIEKQ Sbjct: 8 IAEEVARRRTFAIISHPDAGKTTLTEKLLLFSGAIQMAGTVKGKKTGKFATSDWMEIEKQ 67 Query: 94 RGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIK 153 RGISVASSVMQF+YRDH VNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIK Sbjct: 68 RGISVASSVMQFDYRDHTVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIK 127 Query: 154 LLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYHL 213 LLNVCR+R+TPI+TFMNK DRE RDSLELLDE+ESVLKI+CAPVTWPIGMGKNFRGVYH+ Sbjct: 128 LLNVCRLRSTPIVTFMNKYDREVRDSLELLDEVESVLKIRCAPVTWPIGMGKNFRGVYHM 187 Query: 214 LRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDDF 273 LRDE++LF+AG E+ ++E+I+GIDNP+L E+FPLE+EQL+ME+ELV GAS+ FNLD+F Sbjct: 188 LRDEVLLFEAGAEKITLDLEVIQGIDNPRLDELFPLEMEQLRMEIELVKGASNEFNLDEF 247 Query: 274 LAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQAN 333 LAG TPVFFGSAINNFGVREIL+AL+DWAP P RDAT+REV PTEEPFSGFVFKIQAN Sbjct: 248 LAGELTPVFFGSAINNFGVREILNALIDWAPMPATRDATLREVAPTEEPFSGFVFKIQAN 307 Query: 334 MDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIG 393 MDP HRDRIAFLRVCSGRFERGMK+KHLRLNRDI SSVVTFM+ RE VEEA+AGDIIG Sbjct: 308 MDPKHRDRIAFLRVCSGRFERGMKMKHLRLNRDIAASSVVTFMSHDREIVEEAFAGDIIG 367 Query: 394 LPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAVQ 453 +PNHGN+QIGDSFSEGE L FTGIP+FAP+ FR RIRNPLKIKQL KGLQQLGEEGAVQ Sbjct: 368 IPNHGNIQIGDSFSEGEQLAFTGIPFFAPELFRSVRIRNPLKIKQLQKGLQQLGEEGAVQ 427 Query: 454 VFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADFE 513 VFKP G DLILGAVGVLQFEVVASRL EYGVDAVFE SI SARW+SC+D+KKL +FE Sbjct: 428 VFKPHNGGDLILGAVGVLQFEVVASRLAAEYGVDAVFESASIWSARWVSCEDRKKLEEFE 487 Query: 514 KSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKLD 562 K + NL+ DA GN+AYLA + VNL+LTQERWP ITFH TREHA KL+ Sbjct: 488 KGNLN-NLSTDAGGNLAYLAPNRVNLQLTQERWPAITFHETREHAVKLN 535 >ref|ZP_04600894.1| hypothetical protein GCWU000324_00350 [Kingella oralis ATCC 51147] gb|EEP68454.1| hypothetical protein GCWU000324_00350 [Kingella oralis ATCC 51147] Length = 533 Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/529 (78%), Positives = 471/529 (89%), Gaps = 1/529 (0%) Query: 34 IAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQ 93 I +V+RRRTF IISHPDAGKTTLTEKLLLFSGAIQ AGTVK +K+G+ ATSDWMEIEKQ Sbjct: 5 ILDQVRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQSAGTVKGKKTGKFATSDWMEIEKQ 64 Query: 94 RGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIK 153 RGISVASSVMQF+Y+DH VNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE QTIK Sbjct: 65 RGISVASSVMQFDYKDHTVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEAQTIK 124 Query: 154 LLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYHL 213 LLNVCR+RNTPI+TFMNK DRE RDSLELLDE+E++LKI+CAPVTWPIGMGKNF+GVYH+ Sbjct: 125 LLNVCRLRNTPIVTFMNKYDREVRDSLELLDEVENILKIRCAPVTWPIGMGKNFKGVYHI 184 Query: 214 LRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDDF 273 L DEI LF+AG ER +IIKGIDNP+L + FPLEI+QL+ E+ELV AS+ F+LD+F Sbjct: 185 LNDEIYLFEAGGERLPHEFDIIKGIDNPELEKRFPLEIQQLRDEIELVQAASNEFDLDEF 244 Query: 274 LAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQAN 333 LAG TPVFFGSAINNFG++EIL++L+DWAP P RDATVR V P EE FSGFVFKIQAN Sbjct: 245 LAGELTPVFFGSAINNFGIQEILNSLIDWAPAPQSRDATVRTVSPDEEKFSGFVFKIQAN 304 Query: 334 MDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIG 393 MDP HRDRIAFLRVCSG+FERGMK+KHLR+NRDI SSVVTFM+ RE VEEA+AGDIIG Sbjct: 305 MDPKHRDRIAFLRVCSGKFERGMKMKHLRINRDIAASSVVTFMSHDRELVEEAFAGDIIG 364 Query: 394 LPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAVQ 453 +PNHGN+QIGDSFSEGE L FTGIP+FAP+ FR RI+NPLKIKQL KGLQQLGEEGAVQ Sbjct: 365 IPNHGNIQIGDSFSEGEALAFTGIPFFAPELFRSVRIKNPLKIKQLQKGLQQLGEEGAVQ 424 Query: 454 VFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADFE 513 VFKP++G+DLILGAVGVLQFEVV SRL NEYGV+AVF+ SI SARW+SCDDKKKLA+FE Sbjct: 425 VFKPMSGADLILGAVGVLQFEVVTSRLANEYGVEAVFDNASIWSARWVSCDDKKKLAEFE 484 Query: 514 KSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKLD 562 K++AG NLAIDA GN+AYLA + VNL LTQERWP+I FH TREH+ KL+ Sbjct: 485 KANAG-NLAIDAGGNLAYLAPNRVNLNLTQERWPDIVFHETREHSVKLN 532