BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0096.p (120 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776298.1| nitrite reductase small subunit [Herbaspiril... 247 4e-64 ref|YP_004750829.1| nitrite reductase [NAD(P)H] small subunit [C... 168 2e-40 ref|NP_522782.1| nitrite reductase NADPH small subunit [Ralstoni... 167 3e-40 emb|CBJ40897.1| nitrite reductase (NAD(P)H)nirD [Ralstonia solan... 166 1e-39 ref|ZP_00945793.1| Hypothetical Protein RRSL_01118 [Ralstonia so... 165 2e-39 emb|CCA86832.1| nitrite reductase (NAD(P)H)nirD [Ralstonia syzyg... 164 3e-39 emb|CAQ37074.1| nitrite reductase nadph (small subunit) protein ... 164 3e-39 ref|YP_003750199.1| nitrite reductase (nad(p)h)nird [Ralstonia s... 163 7e-39 gb|AEG71429.1| nitrite reductase nadph (small subunit) protein [... 162 1e-38 ref|YP_003748517.1| nitrite reductase (NAD(P)H)nirD [Ralstonia s... 162 2e-38 >ref|YP_003776298.1| nitrite reductase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ64390.1| nitrite reductase NADPH (small subunit) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 120 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 119/120 (99%), Positives = 120/120 (100%) Query: 1 MHSDQQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPN 60 MHSDQQIKHWTPVC+LGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPN Sbjct: 1 MHSDQQIKHWTPVCELGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPN 60 Query: 61 CDAAVLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWIGA 120 CDAAVLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWIGA Sbjct: 61 CDAAVLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWIGA 120 >ref|YP_004750829.1| nitrite reductase [NAD(P)H] small subunit [Collimonas fungivorans Ter331] gb|AEK60006.1| Nitrite reductase [NAD(P)H] small subunit [Collimonas fungivorans Ter331] Length = 117 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/120 (67%), Positives = 98/120 (81%), Gaps = 5/120 (4%) Query: 1 MHSDQQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPN 60 MH+DQQ +W VC L +I+P+TGV ALV +QVAVFHV+D + RVFA+GNYDPN Sbjct: 1 MHNDQQSSNWIAVCQLDDILPDTGVCALVNGEQVAVFHVVD-----GEHRVFAIGNYDPN 55 Query: 61 CDAAVLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWIGA 120 +AAVLSRGLVG+LGERIVVASPIYKHHFDL TGECLE P +S+ A+PARI++GKVW+ A Sbjct: 56 AEAAVLSRGLVGSLGERIVVASPIYKHHFDLQTGECLEAPEHSVNAYPARISEGKVWVAA 115 >ref|NP_522782.1| nitrite reductase NADPH small subunit [Ralstonia solanacearum GMI1000] emb|CAD18372.1| probable nitrite reductase nadph (small subunit) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/114 (71%), Positives = 91/114 (79%), Gaps = 4/114 (3%) Query: 5 QQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAA 64 Q HWT +C L +IVPNTGV ALVG Q+AVFHV G+ RV+A+GNYDPN DAA Sbjct: 1 MQANHWTAICALDDIVPNTGVCALVGGAQIAVFHV----AGDAPRRVYAIGNYDPNADAA 56 Query: 65 VLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 VLSRGLVGNLGERIVVASPIYK HFDL TGECLE PANS+PA+ A++ DGKVWI Sbjct: 57 VLSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPANSVPAYAAKVEDGKVWI 110 >emb|CBJ40897.1| nitrite reductase (NAD(P)H)nirD [Ralstonia solanacearum CMR15] Length = 113 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/114 (71%), Positives = 90/114 (78%), Gaps = 4/114 (3%) Query: 5 QQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAA 64 Q HWT +C L +IVPNTGV ALVG Q+AVFHV G RV+A+GNYDPN DAA Sbjct: 1 MQANHWTAICALDDIVPNTGVCALVGGAQIAVFHV----AGVAPRRVYAIGNYDPNSDAA 56 Query: 65 VLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 VLSRGLVGNLGERIVVASPIYK HFDL TGECLE PANS+PA+ A++ DGKVWI Sbjct: 57 VLSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPANSVPAYAAKVEDGKVWI 110 >ref|ZP_00945793.1| Hypothetical Protein RRSL_01118 [Ralstonia solanacearum UW551] ref|YP_002257948.1| nitrite reductase nadph (small subunit) protein [Ralstonia solanacearum IPO1609] gb|EAP71696.1| Hypothetical Protein RRSL_01118 [Ralstonia solanacearum UW551] emb|CAQ59841.1| nitrite reductase nadph (small subunit) protein [Ralstonia solanacearum IPO1609] Length = 113 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/113 (70%), Positives = 92/113 (81%), Gaps = 4/113 (3%) Query: 6 QIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAV 65 Q HWT VC L +IVPNTGV ALVG +QVAVFHV G+ RV+A+GNYDPN +AAV Sbjct: 2 QTNHWTAVCALDDIVPNTGVCALVGGEQVAVFHV----AGQAPHRVYAIGNYDPNSEAAV 57 Query: 66 LSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 LSRGLVGNLGERIVVASPIYK HFDL TGECLE PA+S+PA+ A++ DGKVW+ Sbjct: 58 LSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPASSVPAYAAKVEDGKVWV 110 >emb|CCA86832.1| nitrite reductase (NAD(P)H)nirD [Ralstonia syzygii R24] Length = 113 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 4/114 (3%) Query: 5 QQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAA 64 Q HWT VC L +IVPNTGV AL+G +QVAVF R G+ RV+A+GNYDPN DAA Sbjct: 1 MQANHWTAVCTLDDIVPNTGVCALIGGEQVAVF----RVDGDAPRRVYAIGNYDPNSDAA 56 Query: 65 VLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 VLSRGLVGNLGERIVVASPIYK HFDL TGECLE PANS+PA+ A++ DG+VW+ Sbjct: 57 VLSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPANSVPAYAAKVEDGRVWV 110 >emb|CAQ37074.1| nitrite reductase nadph (small subunit) protein [Ralstonia solanacearum MolK2] Length = 113 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 80/114 (70%), Positives = 91/114 (79%), Gaps = 4/114 (3%) Query: 5 QQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAA 64 Q HWT VC L +IVPNTGV ALVG +QVAVFHV G RV+A+GNYDPN +AA Sbjct: 1 MQTNHWTAVCALDDIVPNTGVCALVGGEQVAVFHV----AGHAPHRVYAIGNYDPNSEAA 56 Query: 65 VLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 VLSRGLVGNLGERIVVASPIYK HFDL TGECLE PA+S+PA+ A++ DGKVW+ Sbjct: 57 VLSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPASSVPAYAAKVEDGKVWV 110 >ref|YP_003750199.1| nitrite reductase (nad(p)h)nird [Ralstonia solanacearum PSI07] emb|CBJ35577.1| nitrite reductase (NAD(P)H)nirD [Ralstonia solanacearum PSI07] emb|CCA79866.1| nitrite reductase (NAD(P)H)nirD [blood disease bacterium R229] Length = 113 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 78/114 (68%), Positives = 91/114 (79%), Gaps = 4/114 (3%) Query: 5 QQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAA 64 Q HWT VC L +IVPNTGV AL+G +QVAVF R G+ RV+A+GNYDPN +AA Sbjct: 1 MQANHWTAVCTLDDIVPNTGVCALIGGEQVAVF----RVDGDAPRRVYAIGNYDPNSEAA 56 Query: 65 VLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 VLSRGLVGNLGERIVVASPIYK HFDLTTGECLE PANS+PA+ ++ DG+VW+ Sbjct: 57 VLSRGLVGNLGERIVVASPIYKQHFDLTTGECLEAPANSVPAYATKVEDGRVWV 110 >gb|AEG71429.1| nitrite reductase nadph (small subunit) protein [Ralstonia solanacearum Po82] Length = 113 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 79/113 (69%), Positives = 91/113 (80%), Gaps = 4/113 (3%) Query: 6 QIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAV 65 Q HWT VC L +IVPNTGV ALVG +QVAVFHV G+ RV+A+GNYDPN +AAV Sbjct: 2 QTNHWTAVCALDDIVPNTGVCALVGGEQVAVFHV----AGQAPHRVYAIGNYDPNSEAAV 57 Query: 66 LSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 LSRGLVGNLGERIVVASPIYK HFDL TGECLE PA+S+ A+ A++ DGKVW+ Sbjct: 58 LSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPASSVLAYAAKVEDGKVWV 110 >ref|YP_003748517.1| nitrite reductase (NAD(P)H)nirD [Ralstonia solanacearum CFBP2957] emb|CBJ54131.1| nitrite reductase (NAD(P)H)nirD [Ralstonia solanacearum CFBP2957] Length = 113 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/113 (69%), Positives = 90/113 (79%), Gaps = 4/113 (3%) Query: 6 QIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAV 65 Q HWT VC L +IVPNTGV ALVG +QVAVFHV G RV+A+GNYDPN +AAV Sbjct: 2 QANHWTAVCALDDIVPNTGVCALVGGEQVAVFHV----AGHAPHRVYAIGNYDPNSEAAV 57 Query: 66 LSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 LSRGLVGNLGERIVVASPIYK HFDL TGECLE PA+S+ A+ A++ DGKVW+ Sbjct: 58 LSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPASSVQAYAAKVEDGKVWV 110