BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0093.p (105 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776295.1| UPF0060 superfamily protein [Herbaspirillum ... 202 1e-50 ref|YP_985621.1| hypothetical protein Ajs_1326 [Acidovorax sp. J... 166 1e-39 ref|XP_002334474.1| predicted protein [Populus trichocarpa] >gi|... 161 2e-38 ref|ZP_02881396.1| protein of unknown function UPF0060 [Burkhold... 161 3e-38 ref|YP_297881.1| hypothetical protein Reut_B3679 [Ralstonia eutr... 160 6e-38 ref|YP_986339.1| hypothetical protein Ajs_2087 [Acidovorax sp. J... 159 1e-37 ref|YP_002553126.1| hypothetical protein Dtpsy_1668 [Acidovorax ... 158 2e-37 ref|YP_586169.1| hypothetical protein Rmet_4032 [Cupriavidus met... 158 2e-37 ref|YP_003278733.1| hypothetical protein CtCNB1_2691 [Comamonas ... 158 3e-37 ref|YP_001861186.1| hypothetical protein Bphy_5052 [Burkholderia... 158 3e-37 >ref|YP_003776295.1| UPF0060 superfamily protein [Herbaspirillum seropedicae SmR1] gb|ADJ64387.1| UPF0060 superfamily protein [Herbaspirillum seropedicae SmR1] Length = 105 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA Sbjct: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR Sbjct: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 >ref|YP_985621.1| hypothetical protein Ajs_1326 [Acidovorax sp. JS42] sp|A1W5M0.1|Y1326_ACISJ RecName: Full=UPF0060 membrane protein Ajs_1326 gb|ABM41545.1| protein of unknown function UPF0060 [Acidovorax sp. JS42] Length = 105 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/105 (77%), Positives = 93/105 (88%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 M+T L++ TALAEIVGCYLPYLWL+Q RS WLL+PAA SLALFAWLL+LHE A+GRVYA Sbjct: 1 MRTFALFIATALAEIVGCYLPYLWLKQGRSAWLLVPAAASLALFAWLLTLHETAAGRVYA 60 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVYI VA+LWLW VDG+RP+AWD AG+AVAL GMG+I FQPR Sbjct: 61 AYGGVYIGVALLWLWIVDGIRPTAWDVAGVAVALTGMGLIMFQPR 105 >ref|XP_002334474.1| predicted protein [Populus trichocarpa] gb|EEF09507.1| predicted protein [Populus trichocarpa] Length = 182 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/104 (76%), Positives = 90/104 (86%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 MK LL++ ALAEI GCYLPYLWL+Q RS+WLL+PAALSLALFAWLL+LH A GRVYA Sbjct: 77 MKIFLLFVAAALAEIAGCYLPYLWLKQGRSIWLLVPAALSLALFAWLLTLHATAPGRVYA 136 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQP 104 AYGGVYI VA+ WLWAVD VRP+AWD+AG+AVAL GMGII FQP Sbjct: 137 AYGGVYIGVALAWLWAVDQVRPTAWDFAGVAVALCGMGIIMFQP 180 >ref|ZP_02881396.1| protein of unknown function UPF0060 [Burkholderia graminis C4D1M] gb|EDT12825.1| protein of unknown function UPF0060 [Burkholderia graminis C4D1M] Length = 105 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 76/105 (72%), Positives = 93/105 (88%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 MKTLLLY+ TA AEIVGCYLPYLWL++ +S LL+PAA SLA+FAWLL+LH +A+GRVYA Sbjct: 1 MKTLLLYIATATAEIVGCYLPYLWLKEGKSATLLIPAAFSLAMFAWLLTLHPSAAGRVYA 60 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVYI VA++WLWAV+G+RP+AWDW G++ +L GM IIAFQPR Sbjct: 61 AYGGVYIGVALIWLWAVEGMRPTAWDWTGVSFSLIGMAIIAFQPR 105 >ref|YP_297881.1| hypothetical protein Reut_B3679 [Ralstonia eutropha JMP134] sp|Q46UZ7.1|Y3679_RALEJ RecName: Full=UPF0060 membrane protein Reut_B3679 gb|AAZ63037.1| Protein of unknown function UPF0060 [Ralstonia eutropha JMP134] Length = 105 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 82/105 (78%), Positives = 88/105 (83%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 M T+ LYL TA+AEI+GCYLPYLWLRQ S W+LLP ALSLALFAWLLSLH ASGRVYA Sbjct: 1 MNTIALYLLTAVAEILGCYLPYLWLRQGASAWVLLPGALSLALFAWLLSLHPDASGRVYA 60 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVYI VA+LWLW VDGVRPSAWD AG+ VA GM II FQPR Sbjct: 61 AYGGVYIGVAVLWLWLVDGVRPSAWDLAGVGVAFGGMAIIVFQPR 105 >ref|YP_986339.1| hypothetical protein Ajs_2087 [Acidovorax sp. JS42] sp|A1W7N8.1|Y2087_ACISJ RecName: Full=UPF0060 membrane protein Ajs_2087 gb|ABM42263.1| protein of unknown function UPF0060 [Acidovorax sp. JS42] Length = 110 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/105 (76%), Positives = 90/105 (85%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 KTL L+L TA+AEIVGCYLP+LWLRQ RS WLL+PAA SLALFAWLL+LH AA+GRVYA Sbjct: 4 FKTLALFLLTAVAEIVGCYLPWLWLRQGRSAWLLVPAAASLALFAWLLTLHPAATGRVYA 63 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVY+AVA++WLW VDGVRP WDW G+AV L GM IIAF PR Sbjct: 64 AYGGVYVAVALVWLWTVDGVRPGPWDWLGVAVTLCGMAIIAFAPR 108 >ref|YP_002553126.1| hypothetical protein Dtpsy_1668 [Acidovorax ebreus TPSY] sp|B9MIW0.1|Y1668_DIAST RecName: Full=UPF0060 membrane protein Dtpsy_1668 gb|ACM33126.1| protein of unknown function UPF0060 [Acidovorax ebreus TPSY] Length = 110 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/105 (75%), Positives = 90/105 (85%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 KTL L+L TA+AEIVGCYLP+LWLRQ RS WLL+PAA SLALFAWLL+LH AA+GRVYA Sbjct: 4 FKTLALFLLTAVAEIVGCYLPWLWLRQGRSAWLLVPAAASLALFAWLLTLHPAATGRVYA 63 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVY+AVA++WLW VDGVRP WDW G++V L GM IIAF PR Sbjct: 64 AYGGVYVAVALVWLWTVDGVRPGPWDWLGVSVTLCGMAIIAFAPR 108 >ref|YP_586169.1| hypothetical protein Rmet_4032 [Cupriavidus metallidurans CH34] sp|Q1LG26.1|Y4032_RALME RecName: Full=UPF0060 membrane protein Rmet_4032 gb|ABF10900.1| conserved hypothetical protein; putative inner membrane protein [Cupriavidus metallidurans CH34] Length = 105 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/105 (78%), Positives = 90/105 (85%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 MKT+ LYL TALAEI+GCYLPYLWLRQ S W+LLP A SLA+FAWLL+LH ASGRVYA Sbjct: 1 MKTVGLYLLTALAEILGCYLPYLWLRQGASPWVLLPGAASLAVFAWLLTLHPDASGRVYA 60 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVYIA+A+ WLWAVDGVRPS WD AG+AVAL GM II FQPR Sbjct: 61 AYGGVYIAMAIAWLWAVDGVRPSPWDIAGVAVALGGMAIIVFQPR 105 >ref|YP_003278733.1| hypothetical protein CtCNB1_2691 [Comamonas testosteroni CNB-2] gb|ACY33437.1| hypothetical membrane protein [Comamonas testosteroni CNB-2] Length = 109 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/105 (74%), Positives = 94/105 (89%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 +KTLLL++ TA+AEIVGCYLP+LWL+Q S WLLLPAA+SLALF WLL+LH +ASGRVYA Sbjct: 4 IKTLLLFVLTAVAEIVGCYLPWLWLKQGGSAWLLLPAAVSLALFVWLLTLHPSASGRVYA 63 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGG+YI+VA+LWLW VDG++PSAWD AG+AV L G G+IAFQPR Sbjct: 64 AYGGIYISVALLWLWLVDGIKPSAWDMAGVAVCLLGAGLIAFQPR 108 >ref|YP_001861186.1| hypothetical protein Bphy_5052 [Burkholderia phymatum STM815] sp|B2JLR2.1|Y5052_BURP8 RecName: Full=UPF0060 membrane protein Bphy_5052 gb|ACC74140.1| protein of unknown function UPF0060 [Burkholderia phymatum STM815] Length = 106 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/105 (76%), Positives = 92/105 (87%) Query: 1 MKTLLLYLCTALAEIVGCYLPYLWLRQDRSVWLLLPAALSLALFAWLLSLHEAASGRVYA 60 M+TLLLY+ TA+AEIVGCYLP+ WL++ SVWLLLP ALSLALFAWLL+ H A+GRVYA Sbjct: 1 MRTLLLYVVTAVAEIVGCYLPWRWLKEGGSVWLLLPGALSLALFAWLLTFHGTAAGRVYA 60 Query: 61 AYGGVYIAVAMLWLWAVDGVRPSAWDWAGMAVALAGMGIIAFQPR 105 AYGGVY+AVA+LWLW VD VRPSAWD AG+A+ LAGM IIAFQPR Sbjct: 61 AYGGVYVAVAILWLWCVDHVRPSAWDLAGVALTLAGMSIIAFQPR 105