BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0090.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776292.1| AraC family transcription regulator protein ... 542 e-152 ref|ZP_04625810.1| AraC-type DNA-binding domain-containing prote... 195 7e-48 ref|ZP_04632156.1| AraC-type DNA-binding domain-containing prote... 194 9e-48 ref|ZP_04637656.1| AraC-type DNA-binding domain-containing prote... 192 5e-47 ref|YP_002933949.1| transcriptional regulator, AraC family prote... 181 1e-43 ref|YP_003296314.1| transcriptional regulator, AraC family [Edwa... 178 8e-43 ref|YP_004352147.1| AraC family transcriptional regulator [Pseud... 177 1e-42 ref|ZP_06715358.1| bacterial regulatory protein, AraC family [Ed... 173 3e-41 ref|NP_902828.1| hypothetical protein CV_3158 [Chromobacterium v... 165 6e-39 gb|ADX16780.1| bacterial regulatory protein [Salmonella enterica... 150 3e-34 >ref|YP_003776292.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64384.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 271/274 (98%), Positives = 272/274 (99%) Query: 1 MSSNSTLPPAHAASPRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCG 60 MSSNSTLPPAHA +PRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCG Sbjct: 1 MSSNSTLPPAHATNPRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCG 60 Query: 61 PEGLLLIAAGTQLNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTA 120 PEGLLLIAAGTQLNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTA Sbjct: 61 PEGLLLIAAGTQLNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTA 120 Query: 121 LAPDTLRAWRHLHACMQEDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQ 180 LAPDTLRAWRHLHACMQEDA PELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQ Sbjct: 121 LAPDTLRAWRHLHACMQEDAAPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQ 180 Query: 181 LLMLPPEHRSLEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIA 240 LLMLPPEHRSLEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIA Sbjct: 181 LLMLPPEHRSLEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIA 240 Query: 241 DIAARCGYDSPSRFAVRFRQHFGLSPSQLRQTLQ 274 DIAARCGYDSPSRFAVRFRQHFGLSPSQLRQTLQ Sbjct: 241 DIAARCGYDSPSRFAVRFRQHFGLSPSQLRQTLQ 274 >ref|ZP_04625810.1| AraC-type DNA-binding domain-containing protein [Yersinia kristensenii ATCC 33638] gb|EEP89666.1| AraC-type DNA-binding domain-containing protein [Yersinia kristensenii ATCC 33638] Length = 269 Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 109/256 (42%), Positives = 159/256 (62%), Gaps = 5/256 (1%) Query: 20 SRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQLNVANLP 79 + I R L +V + ++CHVRQG K +QW + G L+L AGT++++AN+P Sbjct: 14 AEIVARRAHTLHRVTVFSPALCHVRQGSKLVQWGSQAASAGQSTLILFPAGTEVSIANMP 73 Query: 80 RNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVST--TALAPDTLRAWRHLHACMQ 137 G Y +DMV LP S++ +FR Y G+LA AP ++ L +T RAW L ++ Sbjct: 74 DRGHYCSDMVYLPQSVLRQFRQWY---GALAVAPVTTASLCVPLDANTRRAWDSLLLNLK 130 Query: 138 EDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRSLEQIAAS 197 AP L AA G+LLAL L G +LL DR D L+ +++Q +L+ P S+ +A + Sbjct: 131 NHAPDALSQHAAMGVLLALHLAGQAGSLLIDRRDKLAEQVQQIILLDPARDWSVSDVAQT 190 Query: 198 LHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDSPSRFAVR 257 LH STLRR+L++E+ FR +L++V++G AL LQ +SL I +IAAR GY S SRF R Sbjct: 191 LHMGDSTLRRKLMQEERQFRVILEEVRMGCALHALQTTSLPIGEIAARHGYISASRFTSR 250 Query: 258 FRQHFGLSPSQLRQTL 273 F+QHFGL+PS+LR+ + Sbjct: 251 FQQHFGLTPSRLREAI 266 >ref|ZP_04632156.1| AraC-type DNA-binding domain-containing protein [Yersinia frederiksenii ATCC 33641] gb|EEQ15254.1| AraC-type DNA-binding domain-containing protein [Yersinia frederiksenii ATCC 33641] Length = 269 Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 109/256 (42%), Positives = 158/256 (61%), Gaps = 5/256 (1%) Query: 20 SRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQLNVANLP 79 + I R LR+V I ++CHVRQG K +QW + + G L+L AG ++++AN P Sbjct: 14 AEIVARRAHTLRRVTIFAPALCHVRQGSKLVQWGAQTANAGQSTLILFPAGAEVSIANTP 73 Query: 80 RNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVST--TALAPDTLRAWRHLHACMQ 137 G Y +DMV LP L+ +FR Y G+LA+ P ++ L DT RAW +L ++ Sbjct: 74 DRGHYCSDMVYLPQELLRQFRQWY---GALAATPVTSASLCVPLDTDTHRAWENLLLNLK 130 Query: 138 EDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRSLEQIAAS 197 AP L +A G+LLAL L G LL DR D L+ +++Q L+ P S+ +A + Sbjct: 131 SQAPNVLLQHSAMGVLLALHLAGQAGPLLIDRRDKLAEQVQQIFLLDPARDWSVSDVAQT 190 Query: 198 LHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDSPSRFAVR 257 LH STLRR+L++E+ FR +L++V++G AL LQ +SLSI +IAA+ GY SPSRF R Sbjct: 191 LHMGDSTLRRKLMQEERQFRVILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSR 250 Query: 258 FRQHFGLSPSQLRQTL 273 F+QHFGL+P +LR+ + Sbjct: 251 FQQHFGLTPRRLREAI 266 >ref|ZP_04637656.1| AraC-type DNA-binding domain-containing protein [Yersinia intermedia ATCC 29909] gb|EEQ18206.1| AraC-type DNA-binding domain-containing protein [Yersinia intermedia ATCC 29909] Length = 269 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 109/254 (42%), Positives = 152/254 (59%), Gaps = 1/254 (0%) Query: 20 SRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQLNVANLP 79 + I R L QV + ++CHVRQG K +QW + G L+L AG ++++AN P Sbjct: 14 AEIVARRAHTLHQVTVFAPALCHVRQGSKLVQWGAQAASAGQSSLILFPAGAEVSIANTP 73 Query: 80 RNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTALAPDTLRAWRHLHACMQED 139 G Y +DMV LP SL+ RFR H+ G ++ AP L T AW L ++ Sbjct: 74 ERGHYCSDMVYLPQSLLRRFR-HWYGALAVTPAPAPSLCVPLDIHTRLAWDSLLLNVKGH 132 Query: 140 APPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRSLEQIAASLH 199 AP L AA G+LLAL L G LL DR D + +++Q LL+ P + S+ +A SLH Sbjct: 133 APDALLQHAAMGVLLALYLAGQAGVLLIDRRDKWAEQVQQVLLLDPARNWSVSDVARSLH 192 Query: 200 CSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDSPSRFAVRFR 259 STLRR+L++E FR +L++V++G AL LQ +SLSI +IAA+ GY SPSRF RF+ Sbjct: 193 IGDSTLRRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSRFQ 252 Query: 260 QHFGLSPSQLRQTL 273 QHFGL+P +LR+ + Sbjct: 253 QHFGLTPRRLREAI 266 >ref|YP_002933949.1| transcriptional regulator, AraC family protein [Edwardsiella ictaluri 93-146] gb|ACR69714.1| transcriptional regulator, AraC family protein [Edwardsiella ictaluri 93-146] Length = 266 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/267 (40%), Positives = 152/267 (56%), Gaps = 11/267 (4%) Query: 13 ASPRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQ 72 +P P + +I R+ QLR+V + ++C VRQG K +QW R G + L+L G++ Sbjct: 5 VTPTPTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSE 64 Query: 73 LNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTA-----LAPDTLR 127 +++AN G Y A+M+ LPA+L+ +FR HYP A P+ TTA + P Sbjct: 65 VSMANQTGAGYYRAEMLYLPAALLRQFRKHYP------QAVPSDGTTASLSLPMTPALTL 118 Query: 128 AWRHLHACMQEDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPE 187 W + ++ P L AE LLLAL G A LL +R D L+ +I+Q LL+ P Sbjct: 119 LWDTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAY 178 Query: 188 HRSLEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCG 247 IA LH + STLRRRL E FR++LD V+LGQAL LQ+ + I DIA++ G Sbjct: 179 AWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSG 238 Query: 248 YDSPSRFAVRFRQHFGLSPSQLRQTLQ 274 Y SPSRF RF + +GL+PS LRQ ++ Sbjct: 239 YASPSRFTARFVRRYGLTPSALRQAMR 265 >ref|YP_003296314.1| transcriptional regulator, AraC family [Edwardsiella tarda EIB202] gb|ACY85103.1| transcriptional regulator, AraC family [Edwardsiella tarda EIB202] gb|ADM42153.1| Transcriptional regulator, AraC/XylS family [Edwardsiella tarda FL6-60] Length = 266 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 104/261 (39%), Positives = 150/261 (57%), Gaps = 1/261 (0%) Query: 14 SPRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQL 73 +P P + +I R+ QLR+V + ++C VRQG K +QW R G + L+L G+++ Sbjct: 6 TPTPTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERCEVAGGDSLVLFPGGSEV 65 Query: 74 NVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTALAPDTLRAWRHLH 133 ++AN G Y A+M+ LPA+L+ +FR HYP Q + + A + P W + Sbjct: 66 SMANQTGAGYYRAEMLYLPAALLRQFRKHYP-QAAPSDEAAASLALPMTPTLTLLWDAVM 124 Query: 134 ACMQEDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRSLEQ 193 ++ P L AE LLLAL G A LL +R D L+ +I+Q LL+ P Sbjct: 125 DALRAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATD 184 Query: 194 IAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDSPSR 253 +A LH + STLRRRL E FR++LD V+LGQAL LQ+ + I DIA++ GY SPSR Sbjct: 185 VAQRLHMAESTLRRRLSAEGKSFRDILDDVRLGQALLALQSGNAPIGDIASQSGYASPSR 244 Query: 254 FAVRFRQHFGLSPSQLRQTLQ 274 F RF + +GL+PS LRQ ++ Sbjct: 245 FTARFVRRYGLTPSALRQAMR 265 >ref|YP_004352147.1| AraC family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA67143.1| putative Transcription factor, AraC family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 272 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/253 (41%), Positives = 146/253 (57%), Gaps = 6/253 (2%) Query: 22 IRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQLNVANLPR- 80 IR R+ L +V + + ++C VRQG+K LQW R + GP+ L+L+ AG +L ++NLP Sbjct: 19 IRARQPLTLSRVPVFVTTLCRVRQGEKLLQWDGREMRAGPQHLILMPAGRELGLSNLPGL 78 Query: 81 NGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTALAP---DTLRAWRHLHACMQ 137 G Y AD V+ PAS + F Y Q + S A+ + P T++AW L A + Sbjct: 79 QGHYIADAVTFPASTLRSFSTRYSQQ--IMSRRGALKSDLCVPLDRHTIQAWDQLLAAIS 136 Query: 138 EDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRSLEQIAAS 197 DAPP L+ E +LL+L L G LL R D L R++Q ++ P ++ +A Sbjct: 137 ADAPPVLRTHYGEAVLLSLCLGGQLGPLLMGRDDPLCERVQQLVMGNPQRDWTVADVAQH 196 Query: 198 LHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDSPSRFAVR 257 L+ STLRR+L E FR +L+ V+L AL+ LQ +S I +IA CGY S SRFAVR Sbjct: 197 LNLGESTLRRQLANEGDSFRNILEGVRLATALQWLQTTSRPIGEIAGTCGYASASRFAVR 256 Query: 258 FRQHFGLSPSQLR 270 FR H+GLSP +LR Sbjct: 257 FRSHYGLSPRELR 269 >ref|ZP_06715358.1| bacterial regulatory protein, AraC family [Edwardsiella tarda ATCC 23685] gb|EFE22301.1| bacterial regulatory protein, AraC family [Edwardsiella tarda ATCC 23685] Length = 277 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/264 (40%), Positives = 152/264 (57%), Gaps = 9/264 (3%) Query: 15 PRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQLN 74 P P L I R+ QLR+V + ++C +RQG K +QW R G L+L AG+++ Sbjct: 7 PVPTLQEISARQSHQLRRVTLFSPALCLIRQGSKTIQWGERCEVAGEASLVLFPAGSEVC 66 Query: 75 VANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVST----TALAPDTLRAWR 130 +AN P G Y A+M+ LPA+L+++FR YP PP ++ A+ P W+ Sbjct: 67 MANQPGGGYYRAEMLYLPAALLQQFRRRYP-----QPTPPEGASRSCCLAMTPTLTLLWQ 121 Query: 131 HLHACMQEDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRS 190 L ++ P L AEGLLLAL G A LL +R D L+ +I+Q LL+ P Sbjct: 122 QLLQGLRLPLAPTLLNHLAEGLLLALQPSGHSALLLHERHDRLTEQIQQLLLLDPAHAWQ 181 Query: 191 LEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDS 250 ++A LH + STLRRRL E FR++LD+V+LGQAL +Q+ + I DIA + GY S Sbjct: 182 AGEVAQRLHMAESTLRRRLSAEGKSFRDILDEVRLGQALLAIQSGNAPIGDIAGQSGYAS 241 Query: 251 PSRFAVRFRQHFGLSPSQLRQTLQ 274 PSRF RF + +GL+PS LRQ L+ Sbjct: 242 PSRFTARFVRRYGLTPSALRQALR 265 >ref|NP_902828.1| hypothetical protein CV_3158 [Chromobacterium violaceum ATCC 12472] gb|AAQ60825.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 266 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 104/252 (41%), Positives = 151/252 (59%), Gaps = 1/252 (0%) Query: 22 IRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGPEGLLLIAAGTQLNVANLPRN 81 IR R Q +R+V + + ++C VR G KR++ R + GP L+L+ AG +L++ NLP Sbjct: 16 IRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVLLPAGCELDIVNLPGP 75 Query: 82 GEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTALAPDTLRAWRHLHACMQEDAP 141 G Y AD+V LP L++RFR + G L P + AW L + +A Sbjct: 76 GGYLADVVGLPPDLLDRFRDRH-GPLLLRQRPGQELCPTMDGPLASAWTLLMDSLHGNAA 134 Query: 142 PELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRSLEQIAASLHCS 201 PE++ AEG+LLAL+L G LLR+++D+L+ + Q +++ P S+E A L+ Sbjct: 135 PEIRQHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLG 194 Query: 202 VSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDSPSRFAVRFRQH 261 STLRRRL E GF+ +L++V++G AL+Q+Q SIA IA GY S SRFA RFRQ Sbjct: 195 ASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGYASASRFAARFRQR 254 Query: 262 FGLSPSQLRQTL 273 +GL+PS LR+TL Sbjct: 255 YGLTPSALRRTL 266 >gb|ADX16780.1| bacterial regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74] Length = 280 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/272 (34%), Positives = 146/272 (53%), Gaps = 8/272 (2%) Query: 2 SSNSTLPPAHAASPRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGP 61 + + T+ H + +R +L +V + A+ICH+ QG K + L GP Sbjct: 14 TEDGTVQEMHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVAGP 73 Query: 62 EGLLLIAAGTQLNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTAL 121 L++I A T L + N P + +D++ L +I RF+ Y + PPA T+ Sbjct: 74 GELIIIPANTPLEIINQPAQNGFRSDLLLLSPEIIARFKTMY-----VQDYPPANLTSLC 128 Query: 122 APDT---LRAWRHLHACMQEDAPPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIE 178 P + W ++ +++ P LQ A GLLLAL GA LL +R L+ ++ Sbjct: 129 TPMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRYTLTEQVR 188 Query: 179 QQLLMLPPEHRSLEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLS 238 Q +++ P + + ++IA L STLRRRL RE +R+++++V++ AL QLQ+++L Sbjct: 189 QLIMLSPAKLWTAQEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCALSQLQSTTLP 248 Query: 239 IADIAARCGYDSPSRFAVRFRQHFGLSPSQLR 270 I +IA RCGY S SRF RFRQH+G PSQ+R Sbjct: 249 IGEIALRCGYLSGSRFTARFRQHYGCLPSQVR 280