BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0062.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase ... 453 e-125 gb|EGP45530.1| CoA-transferase family III family protein 5 [Achr... 354 1e-95 gb|EFV82931.1| hypothetical protein HMPREF0005_00116 [Achromobac... 354 2e-95 ref|ZP_06685969.1| CAIB/BAIF family protein [Achromobacter piech... 352 7e-95 ref|YP_002943938.1| L-carnitine dehydratase/bile acid-inducible ... 347 3e-93 ref|YP_004156153.1| L-carnitine dehydratase/bile acid-inducible ... 345 6e-93 ref|YP_004415220.1| hypothetical protein PT7_0056 [Pusillimonas ... 345 7e-93 ref|YP_003166900.1| L-carnitine dehydratase/bile acid-inducible ... 344 2e-92 ref|YP_004681957.1| hypothetical protein CNE_2c17690 [Cupriavidu... 343 3e-92 ref|YP_004688430.1| L-carnitine dehydratase/bile acid-inducible ... 343 3e-92 >ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] gb|ADJ64292.1| acyl-CoA transferases/carnitine dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 399 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/223 (99%), Positives = 221/223 (99%) Query: 1 MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS 60 MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS Sbjct: 1 MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS 60 Query: 61 HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPR 120 HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQAL ARHPR Sbjct: 61 HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPR 120 Query: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSN 180 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGT DDVVKAGCSIADIAAGMYAYSN Sbjct: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSN 180 Query: 181 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA Sbjct: 181 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223 >gb|EGP45530.1| CoA-transferase family III family protein 5 [Achromobacter xylosoxidans AXX-A] Length = 397 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 173/223 (77%), Positives = 196/223 (87%), Gaps = 3/223 (1%) Query: 2 SPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSH 61 +P+ RPL+GITV+SLEHAIAAPFCTRQLAD+GARVIKIERPG GDFARGYD RV GLSSH Sbjct: 3 TPAPRPLDGITVVSLEHAIAAPFCTRQLADMGARVIKIERPGAGDFARGYDERVRGLSSH 62 Query: 62 FVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRL 121 FVWTNRSKESLTL+LK +E I+++LLQQADVLVQNLAPGAAA LGLS +AL AR PRL Sbjct: 63 FVWTNRSKESLTLDLKRDEAGDIMERLLQQADVLVQNLAPGAAARLGLSFEALHARFPRL 122 Query: 122 IVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNI 181 IVCDISGYGE GPY+DKKAYDLLIQSE+GFLSVTGT DD VKAGCSIADI+AGMYAYS I Sbjct: 123 IVCDISGYGEGGPYQDKKAYDLLIQSESGFLSVTGTADDPVKAGCSIADISAGMYAYSAI 182 Query: 182 LAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGAR 224 L AL+ R + G GS +D+SMLES+ EWM FP+YYA++GA+ Sbjct: 183 LNALLLR---QKTGLGSRLDVSMLESMVEWMGFPMYYAFEGAK 222 >gb|EFV82931.1| hypothetical protein HMPREF0005_00116 [Achromobacter xylosoxidans C54] Length = 397 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 172/223 (77%), Positives = 197/223 (88%), Gaps = 3/223 (1%) Query: 2 SPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSH 61 +P+ RPL+GITV+SLEHAIAAPFCTRQLAD+GARVIKIERPG GDFARGYD RV GLSSH Sbjct: 3 TPAPRPLDGITVVSLEHAIAAPFCTRQLADMGARVIKIERPGAGDFARGYDERVRGLSSH 62 Query: 62 FVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRL 121 FVWTNRSKESLTL+LK +E I+++LLQQADVLVQNLAPGAAA LGLS +AL A++PRL Sbjct: 63 FVWTNRSKESLTLDLKRDEAGDIMERLLQQADVLVQNLAPGAAARLGLSFEALHAKYPRL 122 Query: 122 IVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNI 181 IVCDISGYGE GPY+DKKAYDLLIQSE+GFLSVTGT DD VKAGCSIADI+AGMYAYS I Sbjct: 123 IVCDISGYGEGGPYQDKKAYDLLIQSESGFLSVTGTADDPVKAGCSIADISAGMYAYSAI 182 Query: 182 LAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGAR 224 L AL+ R + G GS +D+SMLES+ EWM FP+YYA++GA+ Sbjct: 183 LNALLLR---QKTGLGSRLDVSMLESMVEWMGFPMYYAFEGAK 222 >ref|ZP_06685969.1| CAIB/BAIF family protein [Achromobacter piechaudii ATCC 43553] gb|EFF77044.1| CAIB/BAIF family protein [Achromobacter piechaudii ATCC 43553] Length = 397 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 172/219 (78%), Positives = 192/219 (87%), Gaps = 3/219 (1%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 RPL+GITV+SLEHAIAAPFCTRQLAD+GARVIKIERPG GDFARGYD RV GLSSHFVWT Sbjct: 7 RPLDGITVVSLEHAIAAPFCTRQLADMGARVIKIERPGSGDFARGYDERVRGLSSHFVWT 66 Query: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125 NRSKESLTL+LK EE ++ +LL+ ADVLVQNLAPGAAA LGLS AL AR+PRLIVCD Sbjct: 67 NRSKESLTLDLKREEADDVMQRLLESADVLVQNLAPGAAARLGLSFDALHARYPRLIVCD 126 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYGE GPY+DKKAYDLLIQSE+GFLSVTGTQDD VKAGCSIADIAAGMYAYS IL AL Sbjct: 127 ISGYGEGGPYQDKKAYDLLIQSESGFLSVTGTQDDPVKAGCSIADIAAGMYAYSAILNAL 186 Query: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGAR 224 + R + G GS +D+SMLES+ EWM FP+YYA++GA+ Sbjct: 187 LLR---QKTGLGSRLDVSMLESMVEWMGFPMYYAFEGAK 222 >ref|YP_002943938.1| L-carnitine dehydratase/bile acid-inducible protein F [Variovorax paradoxus S110] gb|ACS18672.1| L-carnitine dehydratase/bile acid-inducible protein F [Variovorax paradoxus S110] Length = 401 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 168/218 (77%), Positives = 190/218 (87%), Gaps = 3/218 (1%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 RPL+GITV+SLEHAIAAPFCTRQLADLGARVIK+ERPG GDFAR YD+RV G +SHFVW Sbjct: 11 RPLDGITVVSLEHAIAAPFCTRQLADLGARVIKVERPGAGDFARAYDARVGGEASHFVWV 70 Query: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125 NRSKESLTL+LK ++ L+ ADVLVQNLAPGAAA +GL A+ALQA HPRLIVCD Sbjct: 71 NRSKESLTLDLKQPAALAVLQALVADADVLVQNLAPGAAARMGLGAEALQALHPRLIVCD 130 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYG+DGPYRDKKAYDLLIQSEAGFLSVTGT DD K+G SIADIAAGMYAY+ ILAAL Sbjct: 131 ISGYGDDGPYRDKKAYDLLIQSEAGFLSVTGTPDDPCKSGNSIADIAAGMYAYTGILAAL 190 Query: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223 ++R G+ G+GSHID+SMLESLAEWM +P+YYAY+GA Sbjct: 191 LQR---GKTGKGSHIDVSMLESLAEWMGYPMYYAYEGA 225 >ref|YP_004156153.1| L-carnitine dehydratase/bile acid-inducible protein f [Variovorax paradoxus EPS] gb|ADU38042.1| L-carnitine dehydratase/bile acid-inducible protein F [Variovorax paradoxus EPS] Length = 393 Score = 345 bits (886), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 168/218 (77%), Positives = 190/218 (87%), Gaps = 3/218 (1%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 RPL+GITVISLEHAIAAPFCTRQLADLGARVIK+ERP VGDFAR YD RV G +SHFVW Sbjct: 3 RPLDGITVISLEHAIAAPFCTRQLADLGARVIKVERPEVGDFARAYDGRVGGEASHFVWV 62 Query: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125 NRSKESLTL+LK ++ +L+ ADVLVQNLAPGAAA +GL A+ALQA+HPRLIVCD Sbjct: 63 NRSKESLTLDLKQPAALAVLQELVADADVLVQNLAPGAAARMGLGAEALQAKHPRLIVCD 122 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGT D K+G S+ADIAAGMYAY+ ILAAL Sbjct: 123 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPGDPCKSGNSVADIAAGMYAYTGILAAL 182 Query: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223 ++R G+ G+GSHID+SMLESLAEWM +P+YYAY+GA Sbjct: 183 LQR---GKTGKGSHIDVSMLESLAEWMGYPMYYAYEGA 217 >ref|YP_004415220.1| hypothetical protein PT7_0056 [Pusillimonas sp. T7-7] gb|AEC18596.1| hypothetical protein PT7_0056 [Pusillimonas sp. T7-7] Length = 408 Score = 345 bits (885), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 170/219 (77%), Positives = 189/219 (86%), Gaps = 3/219 (1%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 RPL+GITVISLEHAIAAPFCTRQLAD+GARVIK+ERPGVGDFAR YD RV GL+SHFVWT Sbjct: 18 RPLDGITVISLEHAIAAPFCTRQLADMGARVIKVERPGVGDFARKYDERVKGLASHFVWT 77 Query: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125 NRSKESLTL+LK + I+DQLL+QADVLVQNLAPGAAA LGLS +AL ++PRLIVCD Sbjct: 78 NRSKESLTLDLKHPDAAGILDQLLEQADVLVQNLAPGAAARLGLSFEALHEKNPRLIVCD 137 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYGE GPY+DKKAYDLLIQSE+GFLSVTG KAGCSI+DIAAGMYAYS+IL+AL Sbjct: 138 ISGYGEGGPYQDKKAYDLLIQSESGFLSVTGDPQSPAKAGCSISDIAAGMYAYSSILSAL 197 Query: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGAR 224 + R GR G GS ID+SMLES EWMSFPLYYA+ GA Sbjct: 198 LLR---GRTGVGSRIDVSMLESTVEWMSFPLYYAFDGAE 233 >ref|YP_003166900.1| L-carnitine dehydratase/bile acid-inducible protein F [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34971.1| L-carnitine dehydratase/bile acid-inducible protein F [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 392 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 178/268 (66%), Positives = 206/268 (76%), Gaps = 16/268 (5%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 RPL+GITV++LEHAIAAPFCTRQLADLGARVIK+ERP GDFAR YD RV GL+SHFVWT Sbjct: 2 RPLDGITVVTLEHAIAAPFCTRQLADLGARVIKVERPVTGDFARAYDERVRGLASHFVWT 61 Query: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125 NRSKESLTL++K E I+ +LL+QADVLVQNLAPGAAA LGLS + L+ +HPRLIVCD Sbjct: 62 NRSKESLTLDVKHAEAAGILARLLEQADVLVQNLAPGAAARLGLSYEVLREQHPRLIVCD 121 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYG GPYRDKKAYDLLIQSE+GFLS+TG+ D KAGCSIADIAAGMYAYSNILAAL Sbjct: 122 ISGYGASGPYRDKKAYDLLIQSESGFLSITGSPDAPAKAGCSIADIAAGMYAYSNILAAL 181 Query: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGARGHCAAAPNTPPSIPMDRSARA 245 ++R GR GRG HI++SMLES+ EWMS+PLYYA+ GA TPP R+ A Sbjct: 182 LQR---GRSGRGCHIEVSMLESMVEWMSYPLYYAFDGA---------TPPP----RAGAA 225 Query: 246 MARR*CWACRTSGSGRSSASRCCRMRRW 273 A + T+G G++ R W Sbjct: 226 HATITPYGPFTAGDGKTVMLGLQNEREW 253 >ref|YP_004681957.1| hypothetical protein CNE_2c17690 [Cupriavidus necator N-1] gb|AEI80726.1| L-carnitine dehydratase/bile acid-inducible protein F [Cupriavidus necator N-1] Length = 495 Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 162/218 (74%), Positives = 191/218 (87%), Gaps = 3/218 (1%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 RPL+GITV+SLEHAIAAPFCTRQLADLGARVIKIERP VGDFARGYD RV+G+SSHF WT Sbjct: 105 RPLDGITVVSLEHAIAAPFCTRQLADLGARVIKIERPKVGDFARGYDERVDGMSSHFAWT 164 Query: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125 NRSKESL L+LK +E I+ ++L +ADVLVQNLAPGAA LGLS +AL R+P ++VCD Sbjct: 165 NRSKESLALDLKHQEAPAILQKILDKADVLVQNLAPGAADRLGLSYEALSQRYPGIVVCD 224 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYG DGPYRDKKAYDLLIQ+E+GF+S+TGT + KAGCSIADIAAGMYAY+NILAAL Sbjct: 225 ISGYGNDGPYRDKKAYDLLIQAESGFVSITGTPESPSKAGCSIADIAAGMYAYTNILAAL 284 Query: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223 ++R G+ G+G+HID+SMLES+ EWMS+PLYYA+ GA Sbjct: 285 LQR---GKTGKGAHIDVSMLESMVEWMSYPLYYAFDGA 319 >ref|YP_004688430.1| L-carnitine dehydratase/bile acid-inducible protein F [Cupriavidus necator N-1] gb|AEI82392.1| L-carnitine dehydratase/bile acid-inducible protein F [Cupriavidus necator N-1] Length = 392 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 164/218 (75%), Positives = 191/218 (87%), Gaps = 3/218 (1%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 RPL+GITV+SLEHAIAAPFC+RQLADLGARVIKIERP VGDFARGYD RV+G+SSHF WT Sbjct: 2 RPLDGITVVSLEHAIAAPFCSRQLADLGARVIKIERPKVGDFARGYDERVDGMSSHFAWT 61 Query: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125 NRSKESL L+LK E I+ ++L QADVL+QNLAPGAA LGLS +AL R+P +IVCD Sbjct: 62 NRSKESLALDLKHAEAPAILQKILDQADVLIQNLAPGAADRLGLSYEALSQRYPGIIVCD 121 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYG DGPYRDKKAYDLLIQ+E+GF+S+TGT D KAGCSIADIAAGMYAY+NILAAL Sbjct: 122 ISGYGNDGPYRDKKAYDLLIQAESGFVSITGTPDTPSKAGCSIADIAAGMYAYTNILAAL 181 Query: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223 ++R G+ G+G+HID+SMLES+AEWMSFP+YYA+ GA Sbjct: 182 LQR---GKTGKGAHIDVSMLESMAEWMSFPMYYAFDGA 216