BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0051.p         (513 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspirillum serope...  1054   0.0  
ref|ZP_08276000.1| Lysyl-tRNA synthetase (class II) [Oxalobacter...   888   0.0  
ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp....   865   0.0  
ref|ZP_04578247.1| lysyl-tRNA synthetase [Oxalobacter formigenes...   860   0.0  
ref|YP_004753769.1| Lysyl-tRNA synthetase (class II) [Collimonas...   858   0.0  
ref|YP_001100488.1| lysyl-tRNA synthetase [Herminiimonas arsenic...   855   0.0  
ref|YP_295292.1| lysyl-tRNA synthetase [Ralstonia eutropha JMP13...   842   0.0  
ref|ZP_04576057.1| lysyl-tRNA synthetase [Oxalobacter formigenes...   832   0.0  
ref|YP_001898475.1| lysyl-tRNA synthetase [Ralstonia pickettii 1...   828   0.0  
ref|YP_002980930.1| lysyl-tRNA synthetase [Ralstonia pickettii 1...   828   0.0  

>ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gb|ADJ64281.1| lysyl-tRNA synthetase (Class II) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 513

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/513 (99%), Positives = 513/513 (100%)

Query: 1   MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEA 60
           MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEA
Sbjct: 1   MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEA 60

Query: 61  LEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHY 120
           LEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLY+TRDVTGEEAMAAFKHY
Sbjct: 61  LEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYITRDVTGEEAMAAFKHY 120

Query: 121 DLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM 180
           DLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM
Sbjct: 121 DLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM 180

Query: 181 SEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM 240
           SEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM
Sbjct: 181 SEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM 240

Query: 241 RIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ 300
           RIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ
Sbjct: 241 RIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ 300

Query: 301 VIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK 360
           VIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK
Sbjct: 301 VIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK 360

Query: 361 KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE 420
           KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE
Sbjct: 361 KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE 420

Query: 421 RFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPA 480
           RFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPA
Sbjct: 421 RFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPA 480

Query: 481 GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED
Sbjct: 481 GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513


>ref|ZP_08276000.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30527.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 510

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/512 (83%), Positives = 458/512 (89%), Gaps = 4/512 (0%)

Query: 2   TTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEAL 61
           TT    A  PA DE+SI+AERR+KLAAIR  G+AFPNDFRP ++AA LH ++D  +NEAL
Sbjct: 3   TTTEVAAGLPAPDEHSILAERRSKLAAIRAAGIAFPNDFRPQHKAAALHLQFDVLDNEAL 62

Query: 62  EAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHYD 121
           +A PV V VAGRMMLKRVMGKA+FATLQDASGVRADGRIQLY+T D  G +A  AFKHYD
Sbjct: 63  DATPVKVVVAGRMMLKRVMGKASFATLQDASGVRADGRIQLYITNDNVGADAHDAFKHYD 122

Query: 122 LGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIMS 181
           LGDILGAEG LFKTKTGELS+KVT L+LITKSLRPLPDKFHGLADQEMKYRQRYVDLIMS
Sbjct: 123 LGDILGAEGLLFKTKTGELSIKVTALRLITKSLRPLPDKFHGLADQEMKYRQRYVDLIMS 182

Query: 182 EETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFMR 241
           EETRRTFKARTA MSSIRRFM  H FMEVETPMLH IPGGAAAKPFITHHNALDMQMF+R
Sbjct: 183 EETRRTFKARTATMSSIRRFMNEHEFMEVETPMLHTIPGGAAAKPFITHHNALDMQMFLR 242

Query: 242 IAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQV 301
           IAPELYLKRLVVGGFERVFE+NRNFRNEGVSPRHNPEFTMMEFYAAYVDY WLM FTE V
Sbjct: 243 IAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYHWLMDFTEAV 302

Query: 302 IRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELKK 361
           IRQAAIDAHGTA L+YQGRELDLS+PF R TI GAI  YAP Y+  QLAD DF++TELKK
Sbjct: 303 IRQAAIDAHGTATLTYQGRELDLSQPFRRFTILGAINHYAPQYSAEQLADADFIKTELKK 362

Query: 362 FGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITER 421
           FGVK    P A AG+GALQLALFEETAE+QLW PTYI+DYP EVSPLARASDTV GITER
Sbjct: 363 FGVK----PFATAGLGALQLALFEETAEAQLWEPTYIVDYPAEVSPLARASDTVPGITER 418

Query: 422 FELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPAG 481
           FELFI GRE+ANGFSELNDAEDQAARF AQVAAKDAGDEEAM+YDADYIRALEYGMPPAG
Sbjct: 419 FELFICGRELANGFSELNDAEDQAARFQAQVAAKDAGDEEAMFYDADYIRALEYGMPPAG 478

Query: 482 GCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           GCGIGIDRL+MLITDSPNIRDVILFPHLRRED
Sbjct: 479 GCGIGIDRLVMLITDSPNIRDVILFPHLRRED 510


>ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 sp|A6SXF3.1|SYK_JANMA RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
           ligase; Short=LysRS
 gb|ABR88694.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 511

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/515 (82%), Positives = 458/515 (88%), Gaps = 6/515 (1%)

Query: 1   MTTQNTPAAQP-AADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENE 59
           MTT N  AA     DEN IIAERRAKL+A+REQG+AFPNDFRP ++AADLH KYDG   E
Sbjct: 1   MTTHNDDAAAALPQDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLHEKYDGKTRE 60

Query: 60  ALEAEPVTVTVAGRMMLKRVMGK-AAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFK 118
            LEAEPVTVT+AGRMMLKR  GK AAFATLQDASG +ADGRIQ+Y T D+TGE AMAA  
Sbjct: 61  ELEAEPVTVTLAGRMMLKREAGKKAAFATLQDASGAKADGRIQIYATLDLTGEAAMAALH 120

Query: 119 HYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDL 178
           HYDLGDILG  GTLFKTKT EL++KVT+L+L+TKSLRPLPDKFHGLADQE KYRQRYVDL
Sbjct: 121 HYDLGDILGVVGTLFKTKTDELTIKVTELRLLTKSLRPLPDKFHGLADQETKYRQRYVDL 180

Query: 179 IMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQM 238
           IM+E+TRRTFKARTAA+SSIRRFM  + FMEVETPMLH IPGGAAAKPF+THHNALDM+M
Sbjct: 181 IMNEDTRRTFKARTAAISSIRRFMAENDFMEVETPMLHTIPGGAAAKPFVTHHNALDMEM 240

Query: 239 FMRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFT 298
           F+RIAPELYLKRLVVGGF+RVFEINRNFRNEGVS RHNPEFTMMEFYAAY DY+WLM FT
Sbjct: 241 FLRIAPELYLKRLVVGGFDRVFEINRNFRNEGVSIRHNPEFTMMEFYAAYTDYKWLMDFT 300

Query: 299 EQVIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTE 358
           E VIRQAAIDAHGTA L+Y GRELDL+KPF RLTI GAI KYAP YT  QL D +F++ E
Sbjct: 301 EAVIRQAAIDAHGTATLTYGGRELDLAKPFHRLTIVGAINKYAPQYTNEQLHDAEFIKAE 360

Query: 359 LKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGI 418
           LKKFGVK    P A +G+GALQLALFEETAE+QLW PTYIIDYPVEVSPLARASDTVAGI
Sbjct: 361 LKKFGVK----PHAHSGLGALQLALFEETAEAQLWEPTYIIDYPVEVSPLARASDTVAGI 416

Query: 419 TERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMP 478
           TERFELF+ GREIANGFSELNDAEDQAARF AQVAAKDAGDEEAMYYDADYIRALEYGMP
Sbjct: 417 TERFELFMVGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMP 476

Query: 479 PAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           P GGCGIGIDRLMM+ITDSPNIRDV+LFPHLRRED
Sbjct: 477 PTGGCGIGIDRLMMIITDSPNIRDVLLFPHLRRED 511


>ref|ZP_04578247.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gb|EEO29220.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 511

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/511 (80%), Positives = 459/511 (89%), Gaps = 4/511 (0%)

Query: 3   TQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEALE 62
           TQN   A PA DENSI+AERRAKLAA+REQGVA+PNDFRP N+A D+HA+YDG +NEALE
Sbjct: 5   TQNNEPAAPAQDENSIMAERRAKLAALREQGVAYPNDFRPKNKADDIHAQYDGMDNEALE 64

Query: 63  AEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHYDL 122
           A  + V VAGRMMLKRVMGKA+FATLQDASG++A+GRIQL+++ D TG+EA  AFK YD+
Sbjct: 65  AAKIEVCVAGRMMLKRVMGKASFATLQDASGLQANGRIQLFLSNDATGKEAHDAFKRYDI 124

Query: 123 GDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIMSE 182
           GDILGA GTLFKT+TGELSV+V++++LITKS+RPLPDKFHGL+DQE+KYRQRYVDLIMSE
Sbjct: 125 GDILGATGTLFKTRTGELSVRVSEVRLITKSVRPLPDKFHGLSDQELKYRQRYVDLIMSE 184

Query: 183 ETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFMRI 242
           ETR+TFKARTAA++SIRRFM  +GFMEVETPMLH IPGGAAAKPFIT+HNALDMQMFMRI
Sbjct: 185 ETRKTFKARTAAIASIRRFMGDNGFMEVETPMLHAIPGGAAAKPFITYHNALDMQMFMRI 244

Query: 243 APELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQVI 302
           APELYLKRL+VGGFERVFE+NRNFRNEGVSPRHNPEFTMMEFYAAYVDY+WLM FTE VI
Sbjct: 245 APELYLKRLLVGGFERVFELNRNFRNEGVSPRHNPEFTMMEFYAAYVDYKWLMDFTETVI 304

Query: 303 RQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELKKF 362
           RQA +D +GT V++YQG+ELD SKPF R TI  AI KYAP+YT  QL D DFLR ELKKF
Sbjct: 305 RQAVVDTYGTPVITYQGKELDFSKPFRRFTILEAISKYAPHYTLEQLNDADFLRAELKKF 364

Query: 363 GVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITERF 422
           GVK     L  AG+GALQLALFEETAE++LW PTYIIDYPVEVSPLARASDT  GITERF
Sbjct: 365 GVKL----LPTAGVGALQLALFEETAEAKLWEPTYIIDYPVEVSPLARASDTREGITERF 420

Query: 423 ELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPAGG 482
           ELF+ GREIANGFSELND EDQ+ARF  QV AKDAGDEEAMYYD+DYIRALEYGMPPAGG
Sbjct: 421 ELFMVGREIANGFSELNDPEDQSARFMKQVEAKDAGDEEAMYYDSDYIRALEYGMPPAGG 480

Query: 483 CGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           CGIGIDRL+ML+TDSPNIRDVILFPH+RRED
Sbjct: 481 CGIGIDRLVMLLTDSPNIRDVILFPHMRRED 511


>ref|YP_004753769.1| Lysyl-tRNA synthetase (class II) [Collimonas fungivorans Ter331]
 gb|AEK62946.1| Lysyl-tRNA synthetase (class II) [Collimonas fungivorans Ter331]
          Length = 508

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/513 (82%), Positives = 458/513 (89%), Gaps = 5/513 (0%)

Query: 1   MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEA 60
           MTT N     P  DEN IIAERR KL A+R QGVAFPNDFRP ++AA + A+Y   ENE 
Sbjct: 1   MTTDNQQQPVPQ-DENKIIAERRNKLGALRAQGVAFPNDFRPTHKAAAIQAEYAAQENET 59

Query: 61  LEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHY 120
           L+   V V VAGRMMLKRVMGKA+FATLQDASG +ADGRIQL++T++  GEE   +FKHY
Sbjct: 60  LDVAAVKVVVAGRMMLKRVMGKASFATLQDASGSKADGRIQLFITKENIGEENYDSFKHY 119

Query: 121 DLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM 180
           DLGDILGAEGTLFKTKTGELS+KVT L+L+TKSLRPLPDKFHGLADQE KYRQRYVDLI+
Sbjct: 120 DLGDILGAEGTLFKTKTGELSIKVTTLRLLTKSLRPLPDKFHGLADQETKYRQRYVDLII 179

Query: 181 SEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM 240
           +E+TRRTFK RTAAMSSIRRFME + FMEVETPMLH IPGGAAAKPFITHHNALDMQMF+
Sbjct: 180 NEDTRRTFKVRTAAMSSIRRFMEQNDFMEVETPMLHAIPGGAAAKPFITHHNALDMQMFL 239

Query: 241 RIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ 300
           RIAPELYLKRLVVGGFERVFE+NRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLM FTEQ
Sbjct: 240 RIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMNFTEQ 299

Query: 301 VIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK 360
           VIRQAAIDAHGTA L+YQGRELDLSKPF RLTI GAI KYAP Y +AQL D +F++ ELK
Sbjct: 300 VIRQAAIDAHGTATLTYQGRELDLSKPFQRLTIVGAINKYAPQYQDAQLQDAEFIKAELK 359

Query: 361 KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE 420
           KFGVK    P A AG+GALQLALFEETAE+QLW+PTYI+DYPVEVSPLARASDTV GITE
Sbjct: 360 KFGVK----PHAHAGLGALQLALFEETAEAQLWDPTYIVDYPVEVSPLARASDTVPGITE 415

Query: 421 RFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPA 480
           RFELF+TGREIANGFSELND+EDQAARF AQVAAKDAGDEEAMYYDADYIRALEYGMPP 
Sbjct: 416 RFELFVTGREIANGFSELNDSEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPT 475

Query: 481 GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           GGCGIGIDRLMMLITDSPNIRDV+LFPHLRRED
Sbjct: 476 GGCGIGIDRLMMLITDSPNIRDVLLFPHLRRED 508


>ref|YP_001100488.1| lysyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 sp|A4G778.1|SYK_HERAR RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
           ligase; Short=LysRS
 emb|CAL62365.1| Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS) [Herminiimonas
           arsenicoxydans]
          Length = 511

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/515 (81%), Positives = 455/515 (88%), Gaps = 6/515 (1%)

Query: 1   MTTQNTPAAQP-AADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENE 59
           MTT N  AA     DEN IIAERRAKL+A+REQG+AFPNDFRP ++AADL  KY     E
Sbjct: 1   MTTHNDDAAASLPIDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLQEKYGSKTRE 60

Query: 60  ALEAEPVTVTVAGRMMLKRVMGK-AAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFK 118
            LEAEPVTV +AGRMMLKR  GK AAFATLQDASG +ADGRIQ+YVT ++TGE AMAA  
Sbjct: 61  ELEAEPVTVVLAGRMMLKREAGKKAAFATLQDASGSKADGRIQIYVTLNLTGEAAMAALH 120

Query: 119 HYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDL 178
           HYDLGDILG  GTLFKTKT EL++KV++L+LITKSLRPLPDKFHGLADQE KYRQRYVDL
Sbjct: 121 HYDLGDILGVSGTLFKTKTDELTIKVSELRLITKSLRPLPDKFHGLADQETKYRQRYVDL 180

Query: 179 IMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQM 238
           IM+E+TRRTFKARTAA+SSIRRFME + FMEVETPMLH IPGGAAAKPF THHNALDM+M
Sbjct: 181 IMNEDTRRTFKARTAAISSIRRFMERNDFMEVETPMLHTIPGGAAAKPFTTHHNALDMEM 240

Query: 239 FMRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFT 298
           F+RIAPELYLKRLVVGGF+RVFEINRNFRNEGVS RHNPEFTMMEFYAAY DY+WLM FT
Sbjct: 241 FLRIAPELYLKRLVVGGFDRVFEINRNFRNEGVSIRHNPEFTMMEFYAAYTDYKWLMDFT 300

Query: 299 EQVIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTE 358
           E VIRQAAIDAHGTA L+Y GRELDL+KPF RLTI GAI K+AP YT  QL D ++++ E
Sbjct: 301 EAVIRQAAIDAHGTATLTYGGRELDLAKPFHRLTIVGAINKFAPQYTHEQLHDAEYIKAE 360

Query: 359 LKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGI 418
           LKKFGVK    P A +G+GALQLALFEETAE+QLW PTYIIDYPVEVSPLARASDTVAGI
Sbjct: 361 LKKFGVK----PHAHSGLGALQLALFEETAEAQLWEPTYIIDYPVEVSPLARASDTVAGI 416

Query: 419 TERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMP 478
           TERFELF+ GREIANGFSELNDAEDQAARF AQVAAKDAGDEEAMYYDADYIRALEYGMP
Sbjct: 417 TERFELFMVGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMP 476

Query: 479 PAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           P GGCGIGIDRLMM+ITDSPNIRDV+LFPHLRRED
Sbjct: 477 PTGGCGIGIDRLMMIITDSPNIRDVLLFPHLRRED 511


>ref|YP_295292.1| lysyl-tRNA synthetase [Ralstonia eutropha JMP134]
 sp|Q473I5.1|SYK_RALEJ RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
           ligase; Short=LysRS
 gb|AAZ60448.1| Lysyl-tRNA synthetase, class-2 [Ralstonia eutropha JMP134]
          Length = 516

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/509 (80%), Positives = 441/509 (86%), Gaps = 6/509 (1%)

Query: 6   TPAAQ-PAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEALEAE 64
           +P A+ PAADEN IIAERR KLAA+R QGVAFPNDFRP +QAA LH +Y   +  ALEA 
Sbjct: 13  SPTAELPAADENKIIAERREKLAALRRQGVAFPNDFRPTHQAAALHEQYGETDQPALEAT 72

Query: 65  PVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHYDLGD 124
           PV V +AGRMMLKRVMGKA+FAT+QD SG     +IQ Y+TRD  GE+  AAFKH+DLGD
Sbjct: 73  PVEVAIAGRMMLKRVMGKASFATVQDGSG-----QIQFYITRDKVGEDVYAAFKHWDLGD 127

Query: 125 ILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIMSEET 184
           I+ A G LF+T  GELSV+V +L+L++KSLRPLPDKFHGLADQEMKYRQRYVDLI+S ET
Sbjct: 128 IISARGVLFRTNKGELSVQVQELRLLSKSLRPLPDKFHGLADQEMKYRQRYVDLIVSPET 187

Query: 185 RRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFMRIAP 244
           R TF+ART AMSS+RR M   GFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFMRIAP
Sbjct: 188 RNTFRARTKAMSSLRRHMSDAGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFMRIAP 247

Query: 245 ELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQVIRQ 304
           ELYLKRL+VGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY DY+WLM FTE +IRQ
Sbjct: 248 ELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTENLIRQ 307

Query: 305 AAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELKKFGV 364
           AAIDA GTAVL+YQGRELDLSKPF RLTI  AI K+AP YT+AQLAD DFLRTELKKFGV
Sbjct: 308 AAIDASGTAVLTYQGRELDLSKPFHRLTICQAIQKFAPQYTDAQLADADFLRTELKKFGV 367

Query: 365 KTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITERFEL 424
            T       AGIG LQL LFEETAESQLW PT+I+DYPVEVSPLARASDTV GITERFEL
Sbjct: 368 NTSAPQFLNAGIGTLQLVLFEETAESQLWEPTFIVDYPVEVSPLARASDTVPGITERFEL 427

Query: 425 FITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPAGGCG 484
           FITGREIANGFSELNDAEDQA RF  QV  KDAGDEEAMYYDADYIRALEYGMPP GGCG
Sbjct: 428 FITGREIANGFSELNDAEDQADRFRKQVEQKDAGDEEAMYYDADYIRALEYGMPPTGGCG 487

Query: 485 IGIDRLMMLITDSPNIRDVILFPHLRRED 513
           IGIDRL+ML+TDSPNIRDVILFPHLRRED
Sbjct: 488 IGIDRLVMLLTDSPNIRDVILFPHLRRED 516


>ref|ZP_04576057.1| lysyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gb|EEO27019.1| lysyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 511

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/516 (77%), Positives = 455/516 (88%), Gaps = 8/516 (1%)

Query: 1   MTTQ---NTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFE 57
           MTTQ   N PAA PA DENSI+ ERRAKLAA+R++GVA+PNDFRP ++AA LH +YDG +
Sbjct: 1   MTTQTRKNEPAA-PAQDENSIMTERRAKLAALRQEGVAYPNDFRPEHKAASLHEQYDGQD 59

Query: 58  NEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAF 117
           N+ LE   + V VAGRMMLKRVMGKA+FATL DASG RADGRIQL+++ D  G+EA   F
Sbjct: 60  NDTLEPAAIQVCVAGRMMLKRVMGKASFATLMDASGPRADGRIQLFISNDTIGKEAHDIF 119

Query: 118 KHYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVD 177
           K YD+GDILGA+GTLFKTKTGEL+++VT L+LITKS+RPLPDKFHGL+DQE++YRQRYVD
Sbjct: 120 KRYDIGDILGAKGTLFKTKTGELTIRVTALRLITKSVRPLPDKFHGLSDQEIRYRQRYVD 179

Query: 178 LIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQ 237
           LIM+EETRRTF+ARTAA++SIRRFM  +GFMEVETPMLH IPGGAAAKPFIT+HNALDMQ
Sbjct: 180 LIMNEETRRTFRARTAAIASIRRFMGENGFMEVETPMLHAIPGGAAAKPFITYHNALDMQ 239

Query: 238 MFMRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGF 297
           MFMRIAPELYLKRL+VGGF+RVFE+NRNFRNEGVSPRHNPEFTMMEFYAAYVDY+WLM F
Sbjct: 240 MFMRIAPELYLKRLLVGGFDRVFELNRNFRNEGVSPRHNPEFTMMEFYAAYVDYRWLMDF 299

Query: 298 TEQVIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRT 357
           TE VIRQA ID +GT V++YQGRELD SKPF RLTI  AI KYAP+YT+ QL D  F++ 
Sbjct: 300 TETVIRQAVIDTYGTPVITYQGRELDFSKPFHRLTILEAIAKYAPHYTKEQLNDTGFMKA 359

Query: 358 ELKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAG 417
           ELKKFGV+     L  AGIGA+QLALFEETAE++LW PTYIIDYPVEVSPLARASDT   
Sbjct: 360 ELKKFGVEL----LPTAGIGAMQLALFEETAEAKLWEPTYIIDYPVEVSPLARASDTRPD 415

Query: 418 ITERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGM 477
           ITERFELF+ GREIANGFSELND EDQ+ARF  QV AKDAGDEEAMYYD+DYIRALEYGM
Sbjct: 416 ITERFELFMVGREIANGFSELNDPEDQSARFMKQVEAKDAGDEEAMYYDSDYIRALEYGM 475

Query: 478 PPAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           PPAGGCGIGIDRL+ML+TDSPNIRDVILFPH+RRE+
Sbjct: 476 PPAGGCGIGIDRLVMLLTDSPNIRDVILFPHMRREE 511


>ref|YP_001898475.1| lysyl-tRNA synthetase [Ralstonia pickettii 12J]
 sp|B2U8U9.1|SYK_RALPJ RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
           ligase; Short=LysRS
 gb|ACD26043.1| lysyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 514

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/519 (76%), Positives = 441/519 (84%), Gaps = 11/519 (2%)

Query: 1   MTTQNTPA------AQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYD 54
           MT QN PA      A PA D+N IIAERR KLA IR+QGVAFPNDFRP + A DL AKY 
Sbjct: 1   MTEQNNPAESNTAAAVPAQDDNKIIAERREKLAEIRQQGVAFPNDFRPTHHAGDLQAKYR 60

Query: 55  GFENEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAM 114
             E  ALEAEPV V +AGRMMLKRVMGKA+FAT+QDA+      RIQ Y++RD  GE+  
Sbjct: 61  ELEQTALEAEPVQVAIAGRMMLKRVMGKASFATVQDATD-----RIQFYISRDAVGEDVY 115

Query: 115 AAFKHYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQR 174
           A+FK +DLGDI+ A GTL KTKTGELSV VT+L+L++KSLRPLP  ++GLADQE KYRQR
Sbjct: 116 ASFKKWDLGDIVAARGTLMKTKTGELSVAVTELRLLSKSLRPLPGDYYGLADQEQKYRQR 175

Query: 175 YVDLIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNAL 234
           YVDLI+S+ETR TF+ART AM+S+R FM  +GFMEVETPMLHPIPGGAAAKPFITHHNAL
Sbjct: 176 YVDLIVSKETRDTFRARTKAMASLRNFMAGNGFMEVETPMLHPIPGGAAAKPFITHHNAL 235

Query: 235 DMQMFMRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWL 294
           DMQMF+RIAPELYLKRL+VGGFERV+EINRNFRNEGVSPRHNPEFTMMEFYAAY DY+WL
Sbjct: 236 DMQMFLRIAPELYLKRLIVGGFERVYEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWL 295

Query: 295 MGFTEQVIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDF 354
           M FTEQ+IRQAAIDA GTA L+YQGRELDL+KPF RLTI  AI KYAP YT+AQLAD+DF
Sbjct: 296 MDFTEQLIRQAAIDASGTATLTYQGRELDLAKPFHRLTICQAIQKYAPQYTDAQLADVDF 355

Query: 355 LRTELKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDT 414
           LR ELKKF + T+      AG+G LQL LFEETAESQLW PT+IIDYPVEVSPLAR SDT
Sbjct: 356 LRAELKKFKIDTNAPQFLNAGVGTLQLVLFEETAESQLWEPTFIIDYPVEVSPLARGSDT 415

Query: 415 VAGITERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALE 474
           + GITERFELFITGREIANGFSELND EDQA RF  QV  KDAGDEEAM+YDADYIRALE
Sbjct: 416 LPGITERFELFITGREIANGFSELNDPEDQAERFRKQVEQKDAGDEEAMFYDADYIRALE 475

Query: 475 YGMPPAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           YGMPP GGCGIGIDRL+ML+TDSPNIRDVILFPHLRRED
Sbjct: 476 YGMPPTGGCGIGIDRLVMLLTDSPNIRDVILFPHLRRED 514


>ref|YP_002980930.1| lysyl-tRNA synthetase [Ralstonia pickettii 12D]
 ref|ZP_07675890.1| lysine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gb|ACS62258.1| lysyl-tRNA synthetase [Ralstonia pickettii 12D]
 gb|EFP65634.1| lysine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 514

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/519 (76%), Positives = 441/519 (84%), Gaps = 11/519 (2%)

Query: 1   MTTQNTPA------AQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYD 54
           MT QN PA      A PA D+N IIAERR KLA IR+QGVAFPNDFRP + A DL AKY 
Sbjct: 1   MTEQNNPAESSTAAAVPAQDDNKIIAERREKLAEIRQQGVAFPNDFRPTHHAGDLQAKYR 60

Query: 55  GFENEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAM 114
             E  ALEAEPV V +AGRMMLKRVMGKA+FAT+QD++      RIQ Y++RD  GE+  
Sbjct: 61  ELEQAALEAEPVQVAIAGRMMLKRVMGKASFATVQDSTD-----RIQFYISRDAVGEDVY 115

Query: 115 AAFKHYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQR 174
           A+FK +DLGDI+ A GTL KTKTGELSV VT+L+L++KSLRPLP  ++GLADQE KYRQR
Sbjct: 116 ASFKKWDLGDIVAARGTLMKTKTGELSVAVTELRLLSKSLRPLPGDYYGLADQEQKYRQR 175

Query: 175 YVDLIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNAL 234
           YVDLI+S+ETR TF+ART AM+S+R FM  +GFMEVETPMLHPIPGGAAAKPFITHHNAL
Sbjct: 176 YVDLIVSKETRDTFRARTKAMASLRNFMAGNGFMEVETPMLHPIPGGAAAKPFITHHNAL 235

Query: 235 DMQMFMRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWL 294
           DMQMF+RIAPELYLKRL+VGGFERV+EINRNFRNEGVSPRHNPEFTMMEFYAAY DY+WL
Sbjct: 236 DMQMFLRIAPELYLKRLIVGGFERVYEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWL 295

Query: 295 MGFTEQVIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDF 354
           M FTEQ+IRQAAIDA GTA L+YQGRELDL+KPF RLTI  AI KYAP YT+AQLAD+DF
Sbjct: 296 MDFTEQLIRQAAIDASGTATLTYQGRELDLAKPFHRLTICQAIQKYAPQYTDAQLADVDF 355

Query: 355 LRTELKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDT 414
           LR ELKKF + T+      AG+G LQL LFEETAESQLW PT+IIDYPVEVSPLAR SDT
Sbjct: 356 LRAELKKFKIDTNAPQFLNAGVGTLQLVLFEETAESQLWEPTFIIDYPVEVSPLARGSDT 415

Query: 415 VAGITERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALE 474
           + GITERFELFITGREIANGFSELND EDQA RF  QV  KDAGDEEAM+YDADYIRALE
Sbjct: 416 LPGITERFELFITGREIANGFSELNDPEDQAERFRKQVEQKDAGDEEAMFYDADYIRALE 475

Query: 475 YGMPPAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513
           YGMPP GGCGIGIDRL+ML+TDSPNIRDVILFPHLRRED
Sbjct: 476 YGMPPTGGCGIGIDRLVMLLTDSPNIRDVILFPHLRRED 514