BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0048.p (561 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspiril... 1116 0.0 ref|YP_933830.1| putative signaling protein [Azoarcus sp. BH72] ... 432 e-119 ref|NP_901521.1| hypothetical protein CV_1851 [Chromobacterium v... 416 e-114 gb|EGW60730.1| diguanylate cyclase [Dechlorosoma suillum PS] 394 e-107 ref|YP_003442952.1| diguanylate cyclase [Allochromatium vinosum ... 379 e-103 ref|YP_004753934.1| sensory box/GGDEF family protein [Collimonas... 316 7e-84 emb|CAM77777.1| conserved hypothetical protein [Magnetospirillum... 311 1e-82 ref|ZP_08404391.1| sensory box/GGDEF family protein [Hylemonella... 275 2e-71 ref|YP_001475403.1| putative signaling protein [Shewanella sedim... 198 2e-48 ref|YP_001759443.1| diguanylate cyclase [Shewanella woodyi ATCC ... 183 6e-44 >ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspirillum seropedicae SmR1] gb|ADJ64277.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 601 Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/561 (98%), Positives = 556/561 (99%) Query: 1 MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI 60 MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI Sbjct: 41 MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI 100 Query: 61 GYRVQERVRYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGMFVAAANGRILVDY 120 GYRVQERVRYLERLALHLPADRLEDGHAMQAW REHQELQPLFAQGMFVAAANG+ILVDY Sbjct: 101 GYRVQERVRYLERLALHLPADRLEDGHAMQAWLREHQELQPLFAQGMFVAAANGQILVDY 160 Query: 121 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDADGRVVGILGG 180 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDA GRVVGILGG Sbjct: 161 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDAHGRVVGILGG 220 Query: 181 STELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRAL 240 STELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLP GQDLLMD+AL Sbjct: 221 STELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPATGQDLLMDQAL 280 Query: 241 QGFRGNGVGLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAA 300 QGFRGNGVGLAANGVNEIKAFA VPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAA Sbjct: 281 QGFRGNGVGLAANGVNEIKAFAPVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAA 340 Query: 301 MVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLK 360 MVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLK Sbjct: 341 MVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLK 400 Query: 361 LHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLG 420 LHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLG Sbjct: 401 LHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLG 460 Query: 421 HKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTVS 480 HKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTVS Sbjct: 461 HKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTVS 520 Query: 481 EPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIAPARPACAN 540 EPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIAPARPACAN Sbjct: 521 EPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIAPARPACAN 580 Query: 541 TALSAPAETAGTTRPADSAHS 561 TALSAPAETAGTTRPADSAHS Sbjct: 581 TALSAPAETAGTTRPADSAHS 601 >ref|YP_933830.1| putative signaling protein [Azoarcus sp. BH72] emb|CAL94943.1| conserved hypothetical signaling protein [Azoarcus sp. BH72] Length = 547 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/542 (45%), Positives = 333/542 (61%), Gaps = 1/542 (0%) Query: 1 MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI 60 M +KR SL+ RL+ FGL+L+ + + RY++L +L ++ Q+ + QQ A +AQDI Sbjct: 1 MTLKRVSQSLLARLIAFGLLLVILGSFARYYLLAKYLREDLTQLVSAQQLAYAEAVAQDI 60 Query: 61 GYRVQERVRYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGMFVAAANGRILVDY 120 ++++ER+R L+RLA LP L+D + AW E +L P+F+ G+ VA G +L DY Sbjct: 61 DFKLRERLRLLQRLAATLPQTLLDDPERLGAWLAERHKLNPVFSLGIVVADTRGTVLADY 120 Query: 121 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDADGRVVGILGG 180 P GR SLA PDF L+G I P TG ++ + P+R DG V +L G Sbjct: 121 PAAPGRSGGSLAGDPDFTHALKGEGRIGRPKTGLFTGARLLPMSVPLRARDGSVRAVLIG 180 Query: 181 STELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRAL 240 T L A FLD + ++G +G FLL+SP R+ VA+ L P +G + L D+A+ Sbjct: 181 LTALAAPDFLDRISHGRIGESGGFLLVSPADRLFVAAGRPELAMKPTPPSGVNPLHDKAM 240 Query: 241 QGFRGNGVGLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAA 300 GFRG GV A GV E+ A ASVP T W V A LP A A V R + ++ R +I A Sbjct: 241 DGFRGAGVTTNAQGVEEVSAIASVPSTGWFVVARLPTAEAYAPVRRAQEVVIRQSMIAVA 300 Query: 301 MVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLK 360 +V+ + PL RAA LA+RMT GELPL+PLPV R DEVG LT AFN LL +L Sbjct: 301 LVLGVAGFFIRRMLGPLHRAARLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQLLGKLT 360 Query: 361 LHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLG 420 Q +LQ AHHD LTGLPNR++LA+R++ L A R+ + + L+LDLDGFKPIND+LG Sbjct: 361 ASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDSRIAALYLDLDGFKPINDSLG 420 Query: 421 HKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFE-QGAQALAEKCIKTV 479 H+AGD L++++ RLR V R DTLARVGGDEFVLLVTDL + G LA +CI+ V Sbjct: 421 HEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARRCIEAV 480 Query: 480 SEPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIAPARPACA 539 + P+ + R+GVS+GIA D +S+L AAD AMY AK GRGCY IA A + A Sbjct: 481 APPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRIAEAASSPA 540 Query: 540 NT 541 +T Sbjct: 541 DT 542 >ref|NP_901521.1| hypothetical protein CV_1851 [Chromobacterium violaceum ATCC 12472] gb|AAQ59525.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 545 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 226/526 (42%), Positives = 315/526 (59%), Gaps = 2/526 (0%) Query: 1 MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI 60 MK++R S++ RL+ L ++ I + RY+ L FL ++ QV ++QQ +A Y+A DI Sbjct: 12 MKVRRLLDSIIIRLLALSLAIMIIGVLSRYYTLGSFLRQDLGQVVSEQQLALAGYVAHDI 71 Query: 61 GYRVQERVRYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGMFVAAANGRILVDY 120 ++ +R L RLA LP + L++ A++AW +E + QPLF G+FV +GR + DY Sbjct: 72 DDKINQRKALLSRLATALPPELLDNPDALRAWLKERYQYQPLFTIGLFVVRPDGRAIADY 131 Query: 121 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDADGRVVGILGG 180 P + R ++ D ++ L G I + ++G P++ + P+R G V +L G Sbjct: 132 PVVPHRMQVNYGDRDYIQQSLAGQFYIGKAVTGRSSGVPVLPMSAPIR-IGGEVPAVLVG 190 Query: 181 STELTAAGFLDHLQRAQLGP-TGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRA 239 T ++A GFLD LQ++++G SFLL+SP R I+A+S L P GQ+ L D+A Sbjct: 191 VTAISAPGFLDLLQQSRIGDHRDSFLLVSPRDRQIIAASQSELTLQSTPAPGQNPLYDQA 250 Query: 240 LQGFRGNGVGLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQA 299 + G+RG V G E++A VP T W + A LP + A TV R + R LI Sbjct: 251 MAGYRGAAVAATPQGEEEVRAVVQVPSTGWFLVARLPGSEAFATVARVQNFTLRQALIAF 310 Query: 300 AMVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARL 359 + +L RPL RAA ADRMTRGELPL PLP+ R+DEVG L AFN LL +L Sbjct: 311 LVFSVLACGGMYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLIAAFNRLLRKL 370 Query: 360 KLHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTL 419 + Q EL AHHD LTGLPNR +L++R+ AL A R + LLF+DLD FK IND+L Sbjct: 371 EDKQTELAQMAHHDALTGLPNRSLLSDRLHVALAQAQRRDTRLALLFMDLDSFKLINDSL 430 Query: 420 GHKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTV 479 GHKAGD+VL + +RL + R DTLAR+GGDEFVLL++DL E A+ +A KC++ Sbjct: 431 GHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVARTVANKCLEAF 490 Query: 480 SEPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANG 525 + P + +LG+S+GIA+ DG ADSLLQAADQAMY K G Sbjct: 491 NVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTG 536 >gb|EGW60730.1| diguanylate cyclase [Dechlorosoma suillum PS] Length = 538 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/532 (45%), Positives = 327/532 (61%) Query: 1 MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI 60 M++++ S++ R++L GL ++ + RY IL FL ++ +V A QQ +ASY+A+D+ Sbjct: 5 MRLRQLSHSIILRILLLGLGIVVVGTTARYFILSQFLREDLDKVVASQQQALASYVARDV 64 Query: 61 GYRVQERVRYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGMFVAAANGRILVDY 120 ++ ER L+RLA LP L ++AW +E EL PLF QG+ + + G IL D+ Sbjct: 65 DSKLVERRDLLQRLAASLPRQLLGQPRQLRAWLQERHELHPLFNQGLLLVDSRGAILADF 124 Query: 121 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDADGRVVGILGG 180 P + ++LAD + L G + P P++ + PVRD GRV L G Sbjct: 125 PERPLQARINLADREYVQAALAGEASLGRPAPDWLDREPVLPMAAPVRDEQGRVQAALVG 184 Query: 181 STELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRAL 240 T L GFL+ L ++++G +G FLLISP R+ VA+++ LV P AG + L DRA+ Sbjct: 185 LTPLATPGFLNLLLQSRIGRSGGFLLISPRDRVFVAATEPELVLKPTPPAGVNPLHDRAM 244 Query: 241 QGFRGNGVGLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAA 300 G+RG G+ + A GV E A SVP W V A LP A A V R + I R ++ + Sbjct: 245 AGYRGTGITVNAKGVEEAVAIVSVPSAEWFVVARLPTAEAFEPVTRVQQYILRNSVVVSL 304 Query: 301 MVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLK 360 + ++L L FRPLRR A ADRMTRGE PL PLPV R DEVG LT AFN LL +L Sbjct: 305 VFLVLASLGLAHVFRPLRRTAEHADRMTRGECPLEPLPVLRNDEVGHLTAAFNRLLRKLS 364 Query: 361 LHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLG 420 QA L AHHD LTGLPNRM+LA+R+ A A R+ + + LLFLDLDGFKPIND+LG Sbjct: 365 ESQAALAQAAHHDALTGLPNRMLLADRLSQARVLAQRKGSRIALLFLDLDGFKPINDSLG 424 Query: 421 HKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTVS 480 H+AGD+VL+ + RL R DTLARVGGDEFV+L+ DL EQ A +A KCI+ ++ Sbjct: 425 HEAGDEVLRLVAGRLSGCVRASDTLARVGGDEFVILMGDLDSQAEQAAARVAAKCIEALA 484 Query: 481 EPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIA 532 EP + + RLGVS+GIA+ DG A++LL ADQAMY AK +GRG YVIA Sbjct: 485 EPFPVQDQSCRLGVSIGIALGDGESAANTLLLQADQAMYRAKESGRGRYVIA 536 >ref|YP_003442952.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gb|ADC61920.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 535 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 216/526 (41%), Positives = 313/526 (59%), Gaps = 3/526 (0%) Query: 9 SLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDIGYRVQERV 68 S+ RL+L G+ +I ++A + + +L L ++ ++ ++Q +A+Y+A I + R Sbjct: 9 SMAQRLILLGMAIILLNAFILFGLLDRHLRQDLTELTSNQLLTLANYVAAQIDRDILNRR 68 Query: 69 RYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGMFVAAANGRILVDYPTLNGRRA 128 L +A HLP LEDG A++ EHQ + PLF++G+ V +GR++ D+P++ GR A Sbjct: 69 ELLRHVAGHLPPALLEDGTALRDRLAEHQAVNPLFSEGLVVLDESGRVIADHPSVPGRDA 128 Query: 129 LSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDADGRVVGILGGSTELTAAG 188 LSL D F++ +QG I PL S A+ P++ + P+RDADG V +L G + L + Sbjct: 129 LSLGDSDYFRQAIQGEFAIGRPLFSSASKAPVLPMAVPLRDADGPVRAVLVGVSGLKSPN 188 Query: 189 FLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRALQGFRGNGV 248 FL L ++G +G F+L SP R+ + +S + T P G D A+QGFRG G+ Sbjct: 189 FLQALYETRVGVSGGFILTSPRDRLFIGASFRDITLTPTPQEGLHRQHDMAMQGFRGVGI 248 Query: 249 GLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAAMVVLLVVL 308 + A G+ E+ A ASV + W + A +P +ER + G I A + +L++V+ Sbjct: 249 DVNAGGIEELAAIASVSTSGWFLVARIPTRELFAPIERLSDFMLTIGAILACVFLLVMVI 308 Query: 309 AYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLKLHQAELQH 368 RPLR AA A+ MTRGE+PL+PLPV R DEVG LT AFN +L +L +AE+++ Sbjct: 309 GLRHQLRPLREAAHHAECMTRGEIPLAPLPVARDDEVGHLTAAFNRVLEKLLESRAEMEY 368 Query: 369 QAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLGHKAGDQVL 428 A HD LTGLPNR +LA +Q A + A R G+ +L+LDLDGFK IND LGH AGD L Sbjct: 369 LARHDGLTGLPNRQLLATHVQHAQSRAQRHGYGLAILYLDLDGFKAINDRLGHGAGDAAL 428 Query: 429 QEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFE--QGAQALAEKCIKTVSEPICLD 486 E +RL V R DTLAR+GGDEFV+L+ DL P E + A+ +A KC+ P+ + Sbjct: 429 CETAKRLSGVIRGEDTLARIGGDEFVILLADLD-PDEAREVAELVARKCLGVFERPVRVQ 487 Query: 487 QRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIA 532 + RLG S+G+ + G D+LL AAD AMY AK GRG + A Sbjct: 488 DQDCRLGTSLGLVLDHGERTLDALLTAADMAMYRAKEAGRGRFCWA 533 >ref|YP_004753934.1| sensory box/GGDEF family protein [Collimonas fungivorans Ter331] gb|AEK63111.1| Sensory box/GGDEF family protein [Collimonas fungivorans Ter331] Length = 563 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 201/533 (37%), Positives = 289/533 (54%), Gaps = 11/533 (2%) Query: 9 SLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDIGYRVQERV 68 S+ RL+ G+++I LR + F + A QQ IASY+A+DI + VQ R Sbjct: 22 SIKFRLIGLGILIIVAGIGLRLFFALPFAQGLLRDEVAAQQLSIASYIARDIDHSVQARQ 81 Query: 69 RYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGMFVAAANGR-ILVDYPTLNGRR 127 + L+ LP L+ + W E Q + PLF G+ V +G +L +YPT+ GR Sbjct: 82 ALIAELSSALPPALLQQPEKLAIWLEERQRVNPLFNSGLLVVRPDGDGLLAEYPTVAGRS 141 Query: 128 ALSLADYPDFKRVLQGAT-VICPPLLSPATGRPIMAVLTPVRDADGRVVGILGGSTELTA 186 L ++ F+ LQ T V+ P A+G PI+ + PVR+A +VV +L G L Sbjct: 142 ELVFSEVGWFQSALQADTPVMGRPQRGRASGEPILIMAAPVRNAARQVVAVLAGVVALNT 201 Query: 187 AGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRALQGFRGN 246 GFLD LQ QLG +G FLL+SP ++ V +SD A+V P G +LL DRA+ G+RG Sbjct: 202 PGFLDRLQETQLGVSGGFLLVSPADKLFVGASDPAMVLKPTPPVGVNLLHDRAMAGYRGT 261 Query: 247 GVGLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAAMVVLLV 306 G+ + A G+ E+ A +VP T W V A +P A + + L+ A ++ ++ Sbjct: 262 GITINAKGIEELSAMVTVPSTGWFVVARMPTAEVFHPINAMLGFYLKNTLLIVAGMIAIM 321 Query: 307 VLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLAR-------L 359 +L RPL AA M G+ L+PLP+ R+DEVG L + FN L+ R L Sbjct: 322 LLLLPRTLRPLTDAAHAMREMADGKRQLAPLPIRRQDEVGSLVLGFNYLVERLRDKEMAL 381 Query: 360 KLHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTL 419 K +A + AHHD LTGL NR ML +R+Q A+ A R+ LLF DLD FKPIND Sbjct: 382 KESEARMAFMAHHDALTGLCNRAMLEDRLQQAMARAQRDGGHFALLFCDLDDFKPINDEY 441 Query: 420 GHKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTV 479 GH+AGD +L+++ RL+ R DT+AR+GGDEFV+L+TDL A +A++ + + Sbjct: 442 GHEAGDAILRQVAARLQDGRRSTDTVARLGGDEFVILLTDLN-DTRNAAVGVAQQLLAAI 500 Query: 480 SEPICLDQRQYRLGVSVGIAV-CDGSCDADSLLQAADQAMYAAKANGRGCYVI 531 P + + L S+GIA+ C G L+ AD AMY AK G+ + + Sbjct: 501 GIPFNIAGTIFELSASIGIALYCGGGISTSQLMSQADIAMYQAKRAGKNEFFV 553 >emb|CAM77777.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 543 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 195/536 (36%), Positives = 286/536 (53%), Gaps = 15/536 (2%) Query: 2 KIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDIG 61 ++KR S++ +L+ L+++ + V R+ +L L ++ ++A Q IA Y A+D+ Sbjct: 9 RLKRLSRSIIFKLMTLALIMVAVGFVTRFTMLRTLLTEDVVALSAAHQLSIAEYAARDVE 68 Query: 62 YRVQERVRYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGM-FVAAANGRILVDY 120 +V+ R+ L LA LP L + W E P F+QG+ + A++G +L Sbjct: 69 DKVRLRLELLTNLANGLPMAGLAGPQRLNTWLTERHAALPFFSQGLHLIRASDGAMLAT- 127 Query: 121 PTLNGRRALSLADYPDFKRV-LQGATVICPPLLSPATGRPIMAVLTPVRDADGRVVGILG 179 + R S+ D FK V GA I P G ++ + PVRD G V IL Sbjct: 128 -SRPDRPLFSIVDSDWFKAVPATGAAHIGKPYRHGEDGTAVLTMAVPVRDQAGAVTAILT 186 Query: 180 GSTELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRA 239 G++ + + FL L ++G TG FLL+ P + + ++D LP G + L DRA Sbjct: 187 GTSAINSPNFLSQLAEKRVGETGGFLLVDPRDGLFITATDSDRALKPLPAPGLNPLHDRA 246 Query: 240 LQGFRGNGVGLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQA 299 + GFRG G+ GV E+ A ASVP W + A LP AL VE L+ RG ++ + Sbjct: 247 MAGFRGTGITTNLKGVEELSAIASVPTPGWFLVARLPTVEALQPVEHIMTLVIRGSIVVS 306 Query: 300 AMVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARL 359 V+ ++++ FRPL +AA RM RGE + LP+ DEVG++ FN LL L Sbjct: 307 VTVITVLLIMLPRLFRPLTQAARQLHRMARGEQEIRSLPIHSDDEVGEVAKGFNFLLGVL 366 Query: 360 K-----LHQAE--LQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGF 412 + L Q+E + H AHHD+LTGLPNR M +R+ AL A R+ G LL++DLDGF Sbjct: 367 REKEEALRQSEARMSHLAHHDMLTGLPNRAMFEDRLDQALMRAQRQGQGFALLYVDLDGF 426 Query: 413 KPINDTLGHKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALA 472 KPIND+ GH+AGD +L+ + L R DT+AR+GGDEF +L+TDL P A +A Sbjct: 427 KPINDSKGHQAGDAMLRHVADCLTSQLRQTDTVARIGGDEFAILLTDLDDP-APTASRIA 485 Query: 473 EKCIKTVSEPICLDQRQYRLGVSVGIAV--CDGSCDADSLLQAADQAMYAAKANGR 526 E+C +P+ + R+ +S+GIA DG D LL+ AD AMY K + Sbjct: 486 EQCRNAARQPLNWGDTELRVDLSIGIACYPFDGRSAGD-LLRHADHAMYEVKGQHK 540 >ref|ZP_08404391.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] gb|EGI78492.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] Length = 805 Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 175/528 (33%), Positives = 283/528 (53%), Gaps = 9/528 (1%) Query: 7 DCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDIGYRVQE 66 + SL RL+L L L+ L + G ++ E Q+ A Q S Y+ D+ ++Q Sbjct: 10 NLSLKARLLLTILPLVVSGLWLLAVRVTGVMQTELEQMLAAQLSTTVEYVTTDLDSKIQL 69 Query: 67 RVRYLERLALHLPADRLEDGHAMQAWQREHQELQPLFAQGMFVAAANGRILVDYPTLNGR 126 R + +A + L A+ A+ + + +F G+FVA A+G I+ + L GR Sbjct: 70 RHDSMALIASGITPALLASPSALSAYLQHKRMPLSIFPTGVFVANADGVIVGEQIPLPGR 129 Query: 127 RALSLADYPDFKRVLQ-GATVICPPLLSPATGRPIMAVLTPVRDADGRVVGILGGSTELT 185 + + F L+ G +I P L +P++ + P+++A GR VG+L + Sbjct: 130 LGGLITNSSYFLETLRTGEPIISEPRLGQVAHKPVVFITQPLKNAAGRTVGMLAAAMYPG 189 Query: 186 AAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPTAGQDLLMDRAL-QGFR 244 L+ +LG +GSF++++P+ +IV+++++ V +P G + L+DR L QG+ Sbjct: 190 DNHLFGKLESIKLGQSGSFVVMAPQHNLIVSATEQPRVMQPMPAKGVNPLLDRRLEQGYD 249 Query: 245 GNGVGLAANGVNEIKAFASVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAAMV-- 302 G GV + + GV + T WLV A +P A +++ R + + + +V Sbjct: 250 GPGVSVTSLGVESFSVSRRMKTTGWLVVAGVPTQEAFASIDALRWQVYLAAFLLSVVVGW 309 Query: 303 VLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLKLH 362 L +L W P+ A A RMT G P +PLP++R+DE+G L FN L+ K Sbjct: 310 ALYQILRRQW--APIDVAGARIRRMTEGREPFAPLPIERKDEIGSLLDDFNELILWRKKA 367 Query: 363 QAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLGHK 422 + ++++ AHHD LTGLPNR++ +R A + A RE + LLFLDLDGFK IND+LGH Sbjct: 368 ERQMEYLAHHDTLTGLPNRVLAQDRFAQAKSRADRETVKLALLFLDLDGFKTINDSLGHG 427 Query: 423 AGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTVSEP 482 GD +LQ+I RL R DT++R+GGDEF++L++D+ + L K ++ + EP Sbjct: 428 VGDALLQQIAVRLGGCVRDSDTISRLGGDEFLVLLSDISSADDTAPVLL--KVLERLHEP 485 Query: 483 ICLDQRQYRLGVSVGIAVC-DGSCDADSLLQAADQAMYAAKANGRGCY 529 + ++ R+ VS+G+++ D D D+LL+ AD AMY AK GR Y Sbjct: 486 VRVENRELSTSVSIGVSIYPDDGRDFDTLLKKADMAMYRAKDAGRNTY 533 >ref|YP_001475403.1| putative signaling protein [Shewanella sediminis HAW-EB3] gb|ABV38275.1| conserved hypothetical signaling protein [Shewanella sediminis HAW-EB3] Length = 480 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 222/454 (48%), Gaps = 25/454 (5%) Query: 95 EHQELQPLFAQGMFVAAANGRILV-DYPTLNGRRALSLADYPDFKRV-LQGATVICPPLL 152 E + + P+F G+ + + +G LV + P L G F+R L V P Sbjct: 32 EERHVPPIFKYGILLISPDGEELVAESPALPGGTEFIFGQSEWFQRAKLADQAVFSRPFK 91 Query: 153 SPATGRPIMAVLTPVRDADGRVVGILGGSTELTAAGFLDHLQRAQLGPTGSFLLISPEQR 212 + T P + + P+++ + +VV ++ G EL +L + L L+ISP+ Sbjct: 92 NRVTHEPSIVIAAPIKNEENKVVAVVAGILELNQTDLFKYLYSSVLEGGSDILVISPKDN 151 Query: 213 MIVASSDEALVYTRLPTAGQDLLMDRALQGFRGNGVGLAANGVNEIKAFASVPGTSWLVA 272 + VASS +V P G++ L D A++G+RG GV + A GV E+ A S+ T W VA Sbjct: 152 LFVASSIPEMVLKPTPEPGRNRLHDMAMRGYRGVGVTVNAYGVEELAAITSIESTGWFVA 211 Query: 273 ATLPLAAA-LPTVERTRALIARGGLIQAAMVVLLVVLAYLWFFRPLRRAAALADRMTRGE 331 A LP + T +++ ++ A + VL++ ++ PL++AA M +G Sbjct: 212 TRQKTTEAYLPVRQLTESMLMY-LVLSAILGVLIITFVFITMLSPLKKAALSVKDMAQGN 270 Query: 332 LPLSPLPVDRRDEVGQLTMAFNGLL-------ARLKLHQAELQHQAHHDVLTGLPNRMML 384 PL L + +DEVG L FN L+ L+ +L + D LTGL NR Sbjct: 271 TPLKKLTIVHKDEVGDLIDGFNSLVDAIDGRTDALETANQKLAALSLTDELTGLGNRRHF 330 Query: 385 AERMQAALTHACRERNGVGLLFLDLDGFKPINDTLGHKAGDQVLQEITRRLRQ-VARHGD 443 E+++ A R + + L +D+D FK ND GH GD+ LQEI++ L ++R GD Sbjct: 331 NEKLEQEWIRASRTKQPLALGMIDIDFFKKYNDKYGHVLGDECLQEISKLLASIISRAGD 390 Query: 444 TLARVGGDEFVLL--VTDLRLPFEQGAQALAEKCIKTVSEPICLDQRQYRLGV---SVGI 498 AR GG+EF + TD E+GA+ +AEK + + + L + G S+GI Sbjct: 391 LSARYGGEEFAFIAPATD-----EEGARDIAEKFQEAL-HSLTLPHVESEFGFVTASIGI 444 Query: 499 AVCDGSCDADS--LLQAADQAMYAAKANGRGCYV 530 AV + +S L++ AD+A+Y AK GR V Sbjct: 445 AVRTPTKGEESICLIKIADEALYLAKEQGRNRVV 478 >ref|YP_001759443.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gb|ACA85348.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 598 Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 128/391 (32%), Positives = 199/391 (50%), Gaps = 22/391 (5%) Query: 154 PATGRPIMAVLTPVRDADGRVVGILGGSTELTAAGFLDHLQRAQLGPTGSFLLISPEQRM 213 P+ P + +PV D++ R +GI+ L + + A +G +G L+ P+ Sbjct: 208 PSHQAPASFIASPVFDSNRRYIGIIAFQMPLAPLNRVMQVT-AGMGESGETYLVGPD--- 263 Query: 214 IVASSDEALVYTR--LPTAGQDLLMDRALQGFRGNGVGLAANGVNEIKAFASVP--GTSW 269 ++ SD R L T + RAL G G+ G++ AFA V GT W Sbjct: 264 LLMRSDSRFFQGRSILQTQVDTPSVHRALAGESGSARIEDYRGISVFSAFAPVDFLGTRW 323 Query: 270 LVAATLPLAAALPTVERTRALIARGGLIQAAMVVLLVVLAYLWFFRPLRRAAALADRMTR 329 + A + L V + G+I A ++ L L P+ + R++R Sbjct: 324 AIVAEIDTNEILSPVYTMSHFLILSGVIIAIVIFFLGYLLAADISLPIVAMTHMMTRLSR 383 Query: 330 GELPLSPLPVDRRDEVGQLTMAF----NGLLARLKLHQAELQHQAHHDVLTGLPNRMMLA 385 EL ++ +R+DEVG++ A N + R +L Q +L H AHHD LTGLP R Sbjct: 384 NELNINISVSERKDEVGKMAKAMEVFKNNAIERDQL-QKKLNHMAHHDTLTGLPTREYAG 442 Query: 386 ERMQAALTHACRERNGVGLLFLDLDGFKPINDTLGHKAGDQVLQEITRRLRQVARHGDTL 445 ++M+ L ++ N + ++F DLD FK INDTLGH+AGDQ+L+E+ RL + R D + Sbjct: 443 QQMKEYLKAGLKKGNKLVVMFADLDNFKSINDTLGHQAGDQLLKEVAVRLSEAVREDDII 502 Query: 446 ARVGGDEFVLL---VTDLRLPFEQGAQALAEKCIKTVSEPICLDQRQYRLGVSVGIAVC- 501 ARVGGDEFV++ V DL + + +A K I +++ L ++ ++G+S+GIAV Sbjct: 503 ARVGGDEFVIILPYVNDLSV-----IEHIANKMIDSLAINFLLQEQFCQIGLSLGIAVAP 557 Query: 502 DGSCDADSLLQAADQAMYAAKANGRGCYVIA 532 D D +L+ AD+AMY AK G+ +V A Sbjct: 558 DDGLDGTALINKADKAMYQAKQRGKNNFVFA 588