BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0031.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776169.1| response regulator containing a CheY-like re... 439 e-121 ref|YP_001353142.1| LuxR family DNA-binding response regulator [... 338 5e-91 ref|YP_001100139.1| LuxR family transcriptional regulator [Hermi... 337 7e-91 ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxal... 329 2e-88 ref|ZP_08503346.1| Response regulator receiver, LuxR family [Met... 289 2e-76 ref|YP_004295225.1| two component transcriptional regulator, Lux... 272 3e-71 ref|YP_004694187.1| LuxR family two component transcriptional re... 271 5e-71 ref|YP_412031.1| two component LuxR family transcriptional regul... 269 2e-70 ref|YP_003050521.1| two component LuxR family transcriptional re... 263 2e-68 ref|YP_748037.1| two component transcriptional regulator, LuxR f... 261 4e-68 >ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64261.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/217 (100%), Positives = 217/217 (100%) Query: 1 MSKKVTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLL 60 MSKKVTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLL Sbjct: 1 MSKKVTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLL 60 Query: 61 DIVLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLA 120 DIVLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLA Sbjct: 61 DIVLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLA 120 Query: 121 AIRQAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAEL 180 AIRQAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAEL Sbjct: 121 AIRQAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAEL 180 Query: 181 TLSVKTISMYRSRVLSKMKMRHNAELTHYALKNALVE 217 TLSVKTISMYRSRVLSKMKMRHNAELTHYALKNALVE Sbjct: 181 TLSVKTISMYRSRVLSKMKMRHNAELTHYALKNALVE 217 >ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gb|ABR89925.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 215 Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 161/209 (77%), Positives = 190/209 (90%) Query: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 IKVLIADDHAIVREGL+QI A +KDI+VAG+A NG+EAIKL+REG VLLLDI +PDR+ Sbjct: 7 IKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRS 66 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 GI++LKQ++KE P++ VL+LS+HREDQYAIR+LKAGA+G+LNKQ+APAEL+ AIRQ A+G Sbjct: 67 GIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQVAAG 126 Query: 129 RKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTIS 188 RKY+S +LAQELANQI DHETPLHETLSDREYQT+ MIASGKTVSDIA EL LSVKTIS Sbjct: 127 RKYISAALAQELANQISDDHETPLHETLSDREYQTLTMIASGKTVSDIANELVLSVKTIS 186 Query: 189 MYRSRVLSKMKMRHNAELTHYALKNALVE 217 MYRSR+L KMK+RHNAELTHYA+KN LV+ Sbjct: 187 MYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL62015.1| Response regulator receiver, LuxR family [Herminiimonas arsenicoxydans] Length = 215 Score = 337 bits (864), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 161/210 (76%), Positives = 191/210 (90%) Query: 8 AIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDR 67 AIKVLIADDHAIVREGL+QI A ++DI+VAG+A NG EAI+L+REG +VLLLDI +PDR Sbjct: 6 AIKVLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISMPDR 65 Query: 68 NGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAAS 127 +GI++LKQ+RKE P++ +L+LS+HREDQYAIR+LKAGAAG+LNKQ+APAEL+ AIRQ A+ Sbjct: 66 SGIEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAELVTAIRQVAA 125 Query: 128 GRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTI 187 GRKY+S LAQELANQI +HETPLHETLSDREYQT+ MIASGKTVSDIAAEL LSVKTI Sbjct: 126 GRKYISAELAQELANQINDNHETPLHETLSDREYQTLTMIASGKTVSDIAAELVLSVKTI 185 Query: 188 SMYRSRVLSKMKMRHNAELTHYALKNALVE 217 SMYRSR+L KMK+RHNAELTHYA+KN LV+ Sbjct: 186 SMYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] gb|EGF32926.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] Length = 215 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 162/217 (74%), Positives = 190/217 (87%), Gaps = 2/217 (0%) Query: 1 MSKKVTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLL 60 M+KK T I+VLIADDHAIVREGL+QI A +KDI+VAG A NGL+A+KLAR G VLLL Sbjct: 1 MNKKET--IRVLIADDHAIVREGLKQILADTKDIVVAGAAENGLDAVKLARAGEAHVLLL 58 Query: 61 DIVLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLA 120 DI +PDR+GI++LKQIRKE P + VL+LS+HREDQYAIR+LKAGA+G+LNKQ+APAEL+ Sbjct: 59 DISMPDRSGIEVLKQIRKECPAIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVN 118 Query: 121 AIRQAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAEL 180 AIRQ ASGRKY+S LAQELANQ+G D E P HETLSDREYQT+ MIASGKTVSDIA+EL Sbjct: 119 AIRQVASGRKYISTELAQELANQVGDDREIPPHETLSDREYQTLTMIASGKTVSDIASEL 178 Query: 181 TLSVKTISMYRSRVLSKMKMRHNAELTHYALKNALVE 217 LSVKTISMYRSR+L KMK+RHNAELTHYA++N LV+ Sbjct: 179 VLSVKTISMYRSRLLQKMKLRHNAELTHYAIRNHLVD 215 >ref|ZP_08503346.1| Response regulator receiver, LuxR family [Methyloversatilis universalis FAM5] gb|EGK73169.1| Response regulator receiver, LuxR family [Methyloversatilis universalis FAM5] Length = 216 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 139/215 (64%), Positives = 177/215 (82%), Gaps = 4/215 (1%) Query: 7 AAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNG----DVLLLDI 62 ++I++LIADDHAIVR GLRQI + S D++V G A NG+EA+ R+GNG D++L+D+ Sbjct: 2 SSIRILIADDHAIVRSGLRQILSDSPDLVVTGEAENGVEAMHKLRDGNGNASFDLVLMDV 61 Query: 63 VLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAI 122 +PDRNGID LK +RKE P+LPVL+LS+H E+QYAIRALKAGAAG+L KQ+AP +L+ AI Sbjct: 62 SMPDRNGIDTLKLVRKEYPKLPVLVLSMHPEEQYAIRALKAGAAGYLTKQSAPDQLVNAI 121 Query: 123 RQAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTL 182 RQ ASG+KYVSPSLA ELAN I D E P HE LSDREYQT+VMIASG+T++ I EL L Sbjct: 122 RQVASGKKYVSPSLAMELANAITDDSERPPHEKLSDREYQTLVMIASGRTLTQIGEELNL 181 Query: 183 SVKTISMYRSRVLSKMKMRHNAELTHYALKNALVE 217 SVKT+S+YR+R+L KM+M++NAELTHY LK+ LV+ Sbjct: 182 SVKTVSVYRARLLEKMRMKNNAELTHYGLKHGLVD 216 >ref|YP_004295225.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] gb|ADZ27063.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] Length = 210 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 128/209 (61%), Positives = 173/209 (82%) Query: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 I V+IADDHAIVR+GL+QI + + DI V G A G +AIK+AR+ + +V+LLDI LPDRN Sbjct: 2 ISVMIADDHAIVRQGLKQILSETDDIKVTGEAETGFQAIKIARQQDFNVMLLDISLPDRN 61 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 GI+ILKQI+K++P L VL+LS+H E ++AIRALKAGA+G+LNKQ+APA+L+ AIRQ A+G Sbjct: 62 GIEILKQIKKDRPSLAVLMLSMHNEHEFAIRALKAGASGYLNKQSAPAQLVVAIRQVAAG 121 Query: 129 RKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTIS 188 KYVSP +AQELAN I D + PLH TLSDREYQT+ IA+GKT+S+I++E+ LS KT+S Sbjct: 122 DKYVSPVVAQELANIINSDTDKPLHATLSDREYQTLCFIAAGKTLSEISSEMFLSPKTVS 181 Query: 189 MYRSRVLSKMKMRHNAELTHYALKNALVE 217 +YR+R+L K+K+ +N+E+ YA+KN LV+ Sbjct: 182 VYRARLLEKLKLTNNSEIIRYAIKNKLVD 210 >ref|YP_004694187.1| LuxR family two component transcriptional regulator [Nitrosomonas sp. Is79A3] gb|AEJ00788.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. Is79A3] Length = 210 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 128/209 (61%), Positives = 172/209 (82%) Query: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 I V+IADDHAIVR+GL+QI + + DI V G A G +A+K+AR+ + DV+LLDI LPDRN Sbjct: 2 ISVMIADDHAIVRQGLKQILSETDDIKVTGEAETGFQAVKIARQQDFDVMLLDISLPDRN 61 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 GI+ILKQ++K++P L VL+LS+H E ++AIRALKAGA+G+LNKQ+APA+L+ AIRQ A G Sbjct: 62 GIEILKQVKKDKPNLAVLMLSMHNEHEFAIRALKAGASGYLNKQSAPAQLVVAIRQVAMG 121 Query: 129 RKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTIS 188 KYVSP +AQELAN I D + PL+ TLSDREYQT+ IA+GKT+S+I+AE+ LS KT+S Sbjct: 122 DKYVSPVVAQELANIINSDLDKPLYATLSDREYQTLCFIAAGKTLSEISAEMFLSPKTVS 181 Query: 189 MYRSRVLSKMKMRHNAELTHYALKNALVE 217 +YR+R+L K+K+ +N+EL YA+KN LV+ Sbjct: 182 VYRARLLEKLKLTNNSELIRYAIKNKLVD 210 >ref|YP_412031.1| two component LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gb|ABB74639.1| two component transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 208 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 128/207 (61%), Positives = 168/207 (81%) Query: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 + VLI DDHAIVR+GLRQI S I + A +G EA++ REG V++LDI LPDRN Sbjct: 1 MNVLIVDDHAIVRQGLRQILTESGKIDLIAEAESGGEAMRQLREGEWSVVVLDISLPDRN 60 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 GI++LKQIRKE+P+LPVL+LS+H E YAIRALKAGA G++ KQ+AP EL+AAI QAA G Sbjct: 61 GIEVLKQIRKERPKLPVLMLSMHEEGLYAIRALKAGAFGYITKQSAPNELMAAINQAARG 120 Query: 129 RKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTIS 188 RKY++P++A+ +A +G DH+ PLHETLSDREYQT+ +IASGK+++D A E+ LSVKT+S Sbjct: 121 RKYLTPAVAEAMAESLGTDHDRPLHETLSDREYQTLRLIASGKSLTDAAEEMHLSVKTVS 180 Query: 189 MYRSRVLSKMKMRHNAELTHYALKNAL 215 +YR R+L KMK+++NAE+THYA+KN L Sbjct: 181 VYRGRLLQKMKLKNNAEVTHYAIKNGL 207 >ref|YP_003050521.1| two component LuxR family transcriptional regulator [Methylovorus glucosetrophus SIP3-4] ref|YP_004039191.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gb|ACT49994.1| two component transcriptional regulator, LuxR family [Methylovorus glucosetrophus SIP3-4] gb|ADQ83955.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 214 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 129/209 (61%), Positives = 167/209 (79%), Gaps = 1/209 (0%) Query: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 IKV+IADDHAI+REGL+QI + ++DI V A N EAI A + DVLLLDI LPDR+ Sbjct: 7 IKVIIADDHAILREGLKQILSETEDIEVIAEAQNASEAIHYACKLEADVLLLDISLPDRS 66 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 GID L+ I+KE ++ +L+LS+HREDQYAIR+LKAGAAG+L KQ A +EL+ AIR A G Sbjct: 67 GIDALRYIKKENTKIAILMLSMHREDQYAIRSLKAGAAGYLGKQGASSELVNAIRVIAKG 126 Query: 129 RKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTIS 188 +KY++P +A LANQ+ D E PLHE+LSDRE+QT+ +IASG TV +IA L+LSVKT+S Sbjct: 127 KKYITPEVADALANQV-MDTEKPLHESLSDREFQTLTLIASGLTVGEIALRLSLSVKTVS 185 Query: 189 MYRSRVLSKMKMRHNAELTHYALKNALVE 217 MYR+R+L KM+++HNAELTHYA+KN LV+ Sbjct: 186 MYRTRLLEKMQLKHNAELTHYAIKNNLVD 214 >ref|YP_748037.1| two component transcriptional regulator, LuxR family protein [Nitrosomonas eutropha C91] gb|ABI60072.1| two component transcriptional regulator, LuxR family [Nitrosomonas eutropha C91] Length = 210 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/209 (58%), Positives = 171/209 (81%) Query: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 IKV+I DDHAIVR+GL+QI + + DI V G A +G +A+K+ R+ + DV+LLDI LPDRN Sbjct: 2 IKVMITDDHAIVRQGLKQILSETGDISVTGEAESGFQAMKVVRQQDFDVMLLDISLPDRN 61 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 G+D+LKQI+KEQ L VL+LS+H E ++AIRALKAGAAG+LNKQ+APA+L+ AIRQ ASG Sbjct: 62 GLDVLKQIKKEQSNLAVLMLSMHNESEFAIRALKAGAAGYLNKQSAPAQLVTAIRQVASG 121 Query: 129 RKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTIS 188 +K+++P+LA ELAN I + + PLH +LSDRE+QT+ +IASGK +S+I+ E+ LS KT+S Sbjct: 122 QKFITPALAMELANAITSNTDRPLHASLSDREFQTLCLIASGKGLSEISEEICLSPKTVS 181 Query: 189 MYRSRVLSKMKMRHNAELTHYALKNALVE 217 +YR+R+L K+K+ +N+EL YA+ + LV+ Sbjct: 182 VYRARLLEKLKLTNNSELIRYAIMHHLVD 210