BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0017.p (450 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776134.1| response regulatory protein [Herbaspirillum ... 920 0.0 ref|YP_413350.1| two component sigma-54 specific Fis family tran... 675 0.0 ref|NP_841183.1| atoC; response regulatory protein [Nitrosomonas... 647 0.0 ref|YP_747628.1| two component, sigma54 specific, transcriptiona... 644 0.0 ref|YP_934694.1| acetoacetate metabolism regulatory protein [Azo... 627 e-177 ref|ZP_08506692.1| Putative acetoacetate metabolism regulatory p... 609 e-172 ref|YP_157040.1| response regulatory protein [Aromatoleum aromat... 607 e-171 ref|YP_285643.1| helix-turn-helix, Fis-type [Dechloromonas aroma... 601 e-170 ref|YP_002355251.1| two component sigma-54 specific Fis family t... 590 e-166 ref|YP_313955.1| two component Fis family transcriptional regula... 589 e-166 >ref|YP_003776134.1| response regulatory protein [Herbaspirillum seropedicae SmR1] gb|ADJ64226.1| response regulatory protein [Herbaspirillum seropedicae SmR1] Length = 450 Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/450 (99%), Positives = 450/450 (100%) Query: 1 VSENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPD 60 +SENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPD Sbjct: 1 MSENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPD 60 Query: 61 PDGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVV 120 PDGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVV Sbjct: 61 PDGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVV 120 Query: 121 QRAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGT 180 QRAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGT Sbjct: 121 QRAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGT 180 Query: 181 GKEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAH 240 GKEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAH Sbjct: 181 GKEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAH 240 Query: 241 GGTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGG 300 GGTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGG Sbjct: 241 GGTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGG 300 Query: 301 FREDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYE 360 FREDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYE Sbjct: 301 FREDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYE 360 Query: 361 WPGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALT 420 WPGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALT Sbjct: 361 WPGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALT 420 Query: 421 RMDGNILKAAELLGVSRPTLYDLMSRHEIK 450 RMDGNILKAAELLGVSRPTLYDLMSRHEIK Sbjct: 421 RMDGNILKAAELLGVSRPTLYDLMSRHEIK 450 >ref|YP_413350.1| two component sigma-54 specific Fis family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gb|ABB75958.1| two component, sigma54 specific, transcriptional regulator, Fis family [Nitrosospira multiformis ATCC 25196] Length = 449 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/450 (71%), Positives = 382/450 (84%), Gaps = 1/450 (0%) Query: 1 VSENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPD 60 +S++K LL++EDDPGLQ+QLRWS D YEVLVA DRESALA+VRRHEPAVVTMDLGLPPD Sbjct: 1 MSQDKKSLLVIEDDPGLQRQLRWSFDTYEVLVASDRESALALVRRHEPAVVTMDLGLPPD 60 Query: 61 PDGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVV 120 DGASEG ATL+Q+L L PDTKVI+LTGNQDH +A+KAI+ GAYDFHQKP L LV+ Sbjct: 61 ADGASEGLATLEQILELVPDTKVIVLTGNQDHGNALKAIAAGAYDFHQKPFDPNILSLVI 120 Query: 121 QRAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGT 180 +RA+YL+ALQ+EN+++ QA ++ + GLITRD + VCR++EKVAPS A+V+LLG SGT Sbjct: 121 ERAYYLYALQQENRKLLQAQMNSPINGLITRDPVLSKVCRNVEKVAPSDATVILLGESGT 180 Query: 181 GKEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAH 240 GKE+LARALHQLS R +RFMAINCAAIPE+LLESELFGYEKGA+TGA KQT GK+ELAH Sbjct: 181 GKEILARALHQLSARREKRFMAINCAAIPESLLESELFGYEKGAYTGAVKQTPGKIELAH 240 Query: 241 GGTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGG 300 GTFFLDEVGDLPMPLQAKLLRFLQERVIER+GG EIPVDVRV+CATHQNLK+L G Sbjct: 241 EGTFFLDEVGDLPMPLQAKLLRFLQERVIERIGGRKEIPVDVRVVCATHQNLKKLIEDGR 300 Query: 301 FREDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYE 360 FREDLYYRL EI+I IP L++R GDA LLA HF KFC +E R++L+ SQ+A+AAIE + Sbjct: 301 FREDLYYRLSEIVITIPPLRQRVGDAALLAHHFKNKFCMQEKRSSLNFSQEALAAIENHS 360 Query: 361 WPGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALT 420 WPGNVREMENC+ RAVIMA+G I A+DLGL AEP+NLRQ+RD AE A++KAL Sbjct: 361 WPGNVREMENCIKRAVIMAEGSVIGADDLGL-YGTSAAEPINLRQIRDRAECNALMKALA 419 Query: 421 RMDGNILKAAELLGVSRPTLYDLMSRHEIK 450 R+DGN++KAAELLGVSRPT+YDLM+RH +K Sbjct: 420 RVDGNVVKAAELLGVSRPTIYDLMNRHGLK 449 >ref|NP_841183.1| atoC; response regulatory protein [Nitrosomonas europaea ATCC 19718] emb|CAD85035.1| atoC; response regulatory protein [Nitrosomonas europaea ATCC 19718] Length = 452 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/444 (68%), Positives = 366/444 (82%) Query: 7 KLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPDPDGASE 66 KLL++EDDPGLQKQLRWS D V VA DRESALA VRRHEPAVVTMDLGLPPDPDGA+E Sbjct: 9 KLLVIEDDPGLQKQLRWSFDDCNVAVASDRESALAQVRRHEPAVVTMDLGLPPDPDGATE 68 Query: 67 GFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVVQRAFYL 126 G ATLQQ+LA+APDTKVI+LTGNQ+H +A+KAI+MGAYDFHQKP L L+V RAFYL Sbjct: 69 GLATLQQILAVAPDTKVIVLTGNQNHENALKAINMGAYDFHQKPLDANVLSLIVNRAFYL 128 Query: 127 HALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGTGKEVLA 186 H LQREN+ + ++ TA+ GLIT D GM+ +C+ IE++A S +V LLG SGTGKEVLA Sbjct: 129 HRLQRENRELLKSSSSTAIPGLITNDPGMVKICQQIERIASSDVTVTLLGESGTGKEVLA 188 Query: 187 RALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAHGGTFFL 246 +ALHQLS R+ +R +A+NCAAIPE+LLE+ELFGYEKGAF+GA KQT GK+ELA GGTFFL Sbjct: 189 KALHQLSDRNSKRMVAVNCAAIPESLLEAELFGYEKGAFSGAVKQTPGKIELAQGGTFFL 248 Query: 247 DEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGGFREDLY 306 DE+GDLP+ LQAKLLRFLQERVIER+GG IPVDVR++CATHQNLK++ +G FREDLY Sbjct: 249 DEIGDLPLSLQAKLLRFLQERVIERIGGRELIPVDVRIVCATHQNLKKMIEAGTFREDLY 308 Query: 307 YRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYEWPGNVR 366 YRLCEI I IPAL++R GDAVLLA HF +F KE R +L+ SQDA+ AI Y WPGN+R Sbjct: 309 YRLCEISIHIPALRDRIGDAVLLAHHFKNQFRVKEKRQSLNFSQDALDAIGSYSWPGNIR 368 Query: 367 EMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALTRMDGNI 426 E+ENC+ RAVIMA+G QITA DLGL P+ LR+VRD+AE + ++K L R++GN+ Sbjct: 369 EIENCIKRAVIMAEGSQITAADLGLQPAADSFAPVTLREVRDKAEHEMLIKVLARVNGNV 428 Query: 427 LKAAELLGVSRPTLYDLMSRHEIK 450 +AAELLGV+RPTLYDLM+RH +K Sbjct: 429 ARAAELLGVTRPTLYDLMNRHGLK 452 >ref|YP_747628.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Nitrosomonas eutropha C91] gb|ABI59663.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Nitrosomonas eutropha C91] Length = 452 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/449 (68%), Positives = 369/449 (82%) Query: 2 SENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPDP 61 +E + KLL+VEDDPGLQKQLRWS D V VA DRESALA +RRHEPAVVTMDLGLPPDP Sbjct: 4 NEIQKKLLVVEDDPGLQKQLRWSFDDCNVAVASDRESALAQIRRHEPAVVTMDLGLPPDP 63 Query: 62 DGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVVQ 121 DGA+EG ATLQQ+LALAPDTKVI+LTGNQ+H +A+KAI MGAYDFHQKP L L+V Sbjct: 64 DGATEGLATLQQILALAPDTKVIVLTGNQNHENALKAIDMGAYDFHQKPLDAGVLNLIVN 123 Query: 122 RAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGTG 181 RAFYLH LQREN +++QAG +++ G IT D + +C+ IE++A S +V LLG SGTG Sbjct: 124 RAFYLHRLQRENYKLRQAGLISSVPGFITGDPEIARICQQIERIASSDVAVALLGESGTG 183 Query: 182 KEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAHG 241 KEVLA+ALH LS R+ +R +A+NCAAIPE+LLE+ELFGYEKGAFT AAKQT+GK+E A G Sbjct: 184 KEVLAKALHLLSGRNSKRMVAVNCAAIPESLLEAELFGYEKGAFTNAAKQTLGKIETAQG 243 Query: 242 GTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGGF 301 GTFFLDEVGDLP+ LQAKLLRFLQERVIER+GG EIPVDVR+ICATHQ+LK++ +G F Sbjct: 244 GTFFLDEVGDLPLSLQAKLLRFLQERVIERIGGREEIPVDVRIICATHQDLKKMIDAGTF 303 Query: 302 REDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYEW 361 REDL+YRLCEI I IP ++ER GDAVLLA HF ++ KE R TL+ SQDA+ AI + W Sbjct: 304 REDLFYRLCEISIHIPPVRERIGDAVLLAHHFKNQYRIKEKRQTLNFSQDALNAISSHRW 363 Query: 362 PGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALTR 421 PGNVRE+ENC+ RAVIMA+G QITA+DLGL +P LR+VR++AER+ V KAL R Sbjct: 364 PGNVREIENCIKRAVIMAEGSQITAQDLGLQSADNPEQPATLREVREQAEREVVAKALAR 423 Query: 422 MDGNILKAAELLGVSRPTLYDLMSRHEIK 450 MDGNI+KAAELLGV+RPTLYDLM+RH +K Sbjct: 424 MDGNIVKAAELLGVTRPTLYDLMNRHGLK 452 >ref|YP_934694.1| acetoacetate metabolism regulatory protein [Azoarcus sp. BH72] emb|CAL95808.1| probable acetoacetate metabolism regulatory protein [Azoarcus sp. BH72] Length = 453 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 303/450 (67%), Positives = 365/450 (81%), Gaps = 1/450 (0%) Query: 1 VSENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPD 60 +SE + LLIVEDDP LQKQ+RW+ D +E +VA DRESA+A +RR+EPAVVTMDLGLPP+ Sbjct: 2 MSEKQRLLLIVEDDPALQKQMRWAFDGFETVVADDRESAIAQLRRYEPAVVTMDLGLPPE 61 Query: 61 PDGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVV 120 PD +EGF L ++LALAPDTKVI+LTG D +AV+A+ MGAYDF KP E L L + Sbjct: 62 PDATTEGFNLLGEMLALAPDTKVIVLTGQHDRENAVRAVGMGAYDFFAKPFEPELLALTI 121 Query: 121 QRAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGT 180 RAF LH LQ EN R++ + G TAL GL+TRD ML VCR++EKVA ++ +V LLG SGT Sbjct: 122 DRAFRLHDLQLENARLRASQG-TALAGLVTRDVVMLKVCRTVEKVANAAVTVALLGESGT 180 Query: 181 GKEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAH 240 GKEVLAR LH LSPR+ RF+AINCAAIP+NLLESELFGYEKGAFTGA KQT+GK+E AH Sbjct: 181 GKEVLARGLHALSPRAKERFVAINCAAIPDNLLESELFGYEKGAFTGAVKQTLGKIETAH 240 Query: 241 GGTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGG 300 GT FLDE+GDLPMPLQAKLLRFLQERVIER+GG EIPVDVR++CATH++LK G Sbjct: 241 KGTLFLDEIGDLPMPLQAKLLRFLQERVIERIGGREEIPVDVRIVCATHRDLKAQIREGL 300 Query: 301 FREDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYE 360 FREDLYYRL EI+I IP L++R GDAVLLA FVQ+F + GR ++ L++DA+AAIE + Sbjct: 301 FREDLYYRLAEIVIDIPPLRDREGDAVLLAHAFVQRFARENGRGSMALTEDAIAAIEAHP 360 Query: 361 WPGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALT 420 WPGNVRE+ENC+ RAVIMADG +ITAEDLGLS +AE LNLRQ+RDEAERKAVV+ L Sbjct: 361 WPGNVRELENCLKRAVIMADGNRITAEDLGLSSAEDDAEHLNLRQIRDEAERKAVVRVLA 420 Query: 421 RMDGNILKAAELLGVSRPTLYDLMSRHEIK 450 R +GNI +AAE+LG+SRP+LYDLM+R +K Sbjct: 421 RTNGNIARAAEVLGISRPSLYDLMNRFGLK 450 >ref|ZP_08506692.1| Putative acetoacetate metabolism regulatory protein [Methyloversatilis universalis FAM5] gb|EGK69819.1| Putative acetoacetate metabolism regulatory protein [Methyloversatilis universalis FAM5] Length = 449 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 297/444 (66%), Positives = 356/444 (80%), Gaps = 3/444 (0%) Query: 8 LLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPDPDGASEG 67 LLIVEDDP LQKQ+RWS D YEV++A DRESALA +RRHEPAV+TMDLGLPP PD +EG Sbjct: 8 LLIVEDDPALQKQMRWSFDDYEVVLASDRESALAQIRRHEPAVITMDLGLPPAPDDVTEG 67 Query: 68 FATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVVQRAFYLH 127 A L ++ALAP +KVI+LTG D A+A++AI MGAYDF+ KP E L L+++RAF LH Sbjct: 68 MALLGDIVALAPQSKVIVLTGQNDRANALRAIGMGAYDFYAKPFEPELLSLLIERAFRLH 127 Query: 128 ALQRENQRM-QQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGTGKEVLA 186 LQ EN R+ Q G A G ITRDA ML V R+IEKV+ + A+V+LLG SGTGKEVLA Sbjct: 128 DLQMENARLANQTLG--AEGRFITRDANMLRVLRTIEKVSATRATVLLLGESGTGKEVLA 185 Query: 187 RALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAHGGTFFL 246 + LH S R+G RF+AINCAAIP+NLLESELFGYEKGAFTGA KQT GK+E+AH GT FL Sbjct: 186 KTLHDRSERAGERFVAINCAAIPDNLLESELFGYEKGAFTGATKQTPGKIEVAHKGTLFL 245 Query: 247 DEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGGFREDLY 306 DE+GDLP PLQAKLLRFLQERVIER+GG EIP+DVRV+CATHQNL+ L A G FREDLY Sbjct: 246 DEIGDLPGPLQAKLLRFLQERVIERLGGREEIPIDVRVVCATHQNLQNLIAEGRFREDLY 305 Query: 307 YRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYEWPGNVR 366 YRL EI++ IP L+ER GDA LLA FV++F +++GR+++ LS++AVAAIE ++WPGNVR Sbjct: 306 YRLAEIVVTIPPLREREGDAALLAHSFVKRFASEQGRSSMSLSREAVAAIEAHKWPGNVR 365 Query: 367 EMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALTRMDGNI 426 E+ENC+ RA IMADG QI DLGL A NLRQ+R+EAERKAVV L R+DGN+ Sbjct: 366 ELENCIKRATIMADGSQIMVPDLGLKPAEENAGFFNLRQIREEAERKAVVSVLARVDGNM 425 Query: 427 LKAAELLGVSRPTLYDLMSRHEIK 450 +KAAELLGVSRPTLYDLM+R ++ Sbjct: 426 VKAAELLGVSRPTLYDLMNRFGLR 449 >ref|YP_157040.1| response regulatory protein [Aromatoleum aromaticum EbN1] emb|CAI06139.1| response regulatory protein [Aromatoleum aromaticum EbN1] Length = 452 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 294/450 (65%), Positives = 356/450 (79%), Gaps = 1/450 (0%) Query: 1 VSENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPD 60 +++ + LLIVEDDP LQKQ+RW+ DA+E +VA DRESA+ +RRHEPAVVTMDLGLPP Sbjct: 1 MNDKRRTLLIVEDDPALQKQMRWAFDAFETVVASDRESAITQLRRHEPAVVTMDLGLPPT 60 Query: 61 PDGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVV 120 PD EGF L ++LALAPDTKVI+LTG D +AVKA++MGAYDF KP E L L + Sbjct: 61 PDDGVEGFRLLGEMLALAPDTKVIVLTGQHDRENAVKAVAMGAYDFFGKPFEPELLGLTI 120 Query: 121 QRAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGT 180 RAF LH LQ EN R+ G + L ++TRD+ ML VCR++EKVAP++ +V LLG SGT Sbjct: 121 DRAFRLHDLQMENLRLVALQG-SGLAAVLTRDSAMLKVCRTVEKVAPANVTVALLGESGT 179 Query: 181 GKEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAH 240 GKE+LAR LH +S R+ RF+AINCAAIPE LLESELFGYEKGAFTGA KQT GK+E AH Sbjct: 180 GKEILARGLHAMSTRAKERFVAINCAAIPETLLESELFGYEKGAFTGAVKQTQGKIEAAH 239 Query: 241 GGTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGG 300 GTFFLDE+GDLPM LQAKLLRFLQERVIER+GG EI VDVR++CATH++LK ++G Sbjct: 240 KGTFFLDEIGDLPMALQAKLLRFLQERVIERIGGREEIAVDVRIVCATHRDLKAQISAGL 299 Query: 301 FREDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYE 360 FREDLYYRL EI+I+IP L++R GDAVLLA FVQ+F GR T+HL DAVAAIE + Sbjct: 300 FREDLYYRLAEIVIEIPPLRDRDGDAVLLAHAFVQRFAQANGRGTMHLGDDAVAAIESHR 359 Query: 361 WPGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALT 420 WPGNVRE+ENC+ RAVIM +G +ITA+DLGL + + LNLRQVRDEAER+AVV+ L Sbjct: 360 WPGNVRELENCLKRAVIMTEGSRITADDLGLDSVDPDLQHLNLRQVRDEAERRAVVRVLA 419 Query: 421 RMDGNILKAAELLGVSRPTLYDLMSRHEIK 450 R +GNI +AAE+LGVSRP+LYDLM+R +K Sbjct: 420 RTNGNIARAAEILGVSRPSLYDLMNRFALK 449 >ref|YP_285643.1| helix-turn-helix, Fis-type [Dechloromonas aromatica RCB] gb|AAZ47173.1| two component, sigma54 specific, transcriptional regulator, Fis family [Dechloromonas aromatica RCB] Length = 451 Score = 601 bits (1549), Expect = e-170, Method: Compositional matrix adjust. Identities = 295/443 (66%), Positives = 348/443 (78%) Query: 8 LLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPDPDGASEG 67 LLIVEDDP LQKQLRWS D YE L AGDRESALA+V RH PAVVTMDLGLPPD D SEG Sbjct: 9 LLIVEDDPALQKQLRWSFDQYEPLAAGDRESALALVHRHRPAVVTMDLGLPPDADSVSEG 68 Query: 68 FATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVVQRAFYLH 127 F L+Q+L+ PDTKVI+LTG D +A++AI +GAYDF KP E L L + RAF L+ Sbjct: 69 FLLLEQILSAQPDTKVIVLTGQNDRTNALRAIGLGAYDFFAKPFEPELLTLTIDRAFRLY 128 Query: 128 ALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGTGKEVLAR 187 LQ+EN+R+Q A TALGGL+TRDAGM +CR+IEKVA S+A+V+LLG SGTGKEVLAR Sbjct: 129 ELQQENRRLQAAQHPTALGGLLTRDAGMQRICRTIEKVANSNATVLLLGESGTGKEVLAR 188 Query: 188 ALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAHGGTFFLD 247 LH+ SPR RF+AINCAAIPENLLESELFGYEKGAFTGAAK T+GK+E AHGGT LD Sbjct: 189 GLHEASPRKNERFVAINCAAIPENLLESELFGYEKGAFTGAAKTTLGKIETAHGGTLMLD 248 Query: 248 EVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGGFREDLYY 307 E+GDLP+ LQAKLLRFLQERVIER+GG EIPVDVR++CATHQ+LK G FREDL+Y Sbjct: 249 EIGDLPLALQAKLLRFLQERVIERLGGRHEIPVDVRIVCATHQDLKSHIKEGRFREDLFY 308 Query: 308 RLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYEWPGNVRE 367 RL EI+I IP L+ R GDA LLA FV +F R + L++DAV AIE + WPGNVRE Sbjct: 309 RLAEIVIDIPPLRSRDGDAALLAHAFVHRFANDHKRGGMTLTEDAVRAIEAHNWPGNVRE 368 Query: 368 MENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALTRMDGNIL 427 +EN V RAVIMADG QIT ED+GL A ++LR VR+EAER+AV A++R DGN++ Sbjct: 369 LENAVKRAVIMADGHQITREDIGLDHLEGTANFIDLRLVREEAERRAVATAVSRADGNMV 428 Query: 428 KAAELLGVSRPTLYDLMSRHEIK 450 +A+E+LG+SRPTLYDLM R +K Sbjct: 429 RASEILGISRPTLYDLMHRLGLK 451 >ref|YP_002355251.1| two component sigma-54 specific Fis family transcriptional regulator [Thauera sp. MZ1T] gb|ACK54355.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thauera sp. MZ1T] Length = 457 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 285/443 (64%), Positives = 347/443 (78%), Gaps = 1/443 (0%) Query: 8 LLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPDPDGASEG 67 LLIVEDD LQKQ+RW+ DA E +VA DRESA+A +R+HEPAVVTMDLGLPP PD SEG Sbjct: 11 LLIVEDDLALQKQMRWAFDASETVVASDRESAIAQLRKHEPAVVTMDLGLPPAPDDVSEG 70 Query: 68 FATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVVQRAFYLH 127 F L+++L LAPDTKVI+LTG D +A+KA+ +GAYDF KP E L L ++RAF +H Sbjct: 71 FKLLREILTLAPDTKVIVLTGQHDRENAIKAVGLGAYDFFAKPFEPELLNLTIERAFRMH 130 Query: 128 ALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGTGKEVLAR 187 LQREN R+ G + L GL+TRD GML VCR+IEK+A +SA+V LLG SGTGKE+LAR Sbjct: 131 DLQRENARLAALEG-SPLSGLLTRDPGMLKVCRTIEKLASASATVALLGESGTGKEILAR 189 Query: 188 ALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAHGGTFFLD 247 LH S R+ RF+AINCAAIP+ LLESELFGYEKGAFTGA KQT+GK+E A+GGT FLD Sbjct: 190 GLHMRSARARERFVAINCAAIPDALLESELFGYEKGAFTGAVKQTLGKIETANGGTLFLD 249 Query: 248 EVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGGFREDLYY 307 E+GDLP+ LQAKLLRFLQER IER+GG EIPVDVR++CATH+NLK +G FREDLYY Sbjct: 250 EIGDLPLALQAKLLRFLQERSIERIGGREEIPVDVRIVCATHRNLKAQIQAGVFREDLYY 309 Query: 308 RLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYEWPGNVRE 367 RL EI+I+IP L+ER GDA LA F Q+F + GR T + DA++AIE + WPGNVRE Sbjct: 310 RLAEIVIEIPPLRERDGDATYLAHAFAQRFAKENGRRTPIFTDDALSAIEAHRWPGNVRE 369 Query: 368 MENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALTRMDGNIL 427 +ENC+ RAVIMADG+ I AEDLGL+ + NLRQVR++AER AV+K + R +GNI Sbjct: 370 LENCIKRAVIMADGECIAAEDLGLAAGDEDLSIFNLRQVREDAERAAVLKVIARTNGNIA 429 Query: 428 KAAELLGVSRPTLYDLMSRHEIK 450 +AAE+LGVSRP+LYDL+SR +K Sbjct: 430 RAAEILGVSRPSLYDLLSRFGLK 452 >ref|YP_313955.1| two component Fis family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gb|AAZ96150.1| Two Component Transcriptional Regulator, Fis family [Thiobacillus denitrificans ATCC 25259] Length = 449 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 286/450 (63%), Positives = 359/450 (79%), Gaps = 1/450 (0%) Query: 1 VSENKPKLLIVEDDPGLQKQLRWSLDAYEVLVAGDRESALAMVRRHEPAVVTMDLGLPPD 60 +S+ K K+L+VEDD GLQKQL+WSL YE++VA DR+SA+A +RRHEP VV +DLGLPPD Sbjct: 1 MSDAKQKILLVEDDLGLQKQLKWSLADYELIVAADRDSAIAQLRRHEPPVVLLDLGLPPD 60 Query: 61 PDGASEGFATLQQVLALAPDTKVIMLTGNQDHAHAVKAISMGAYDFHQKPCIDETLRLVV 120 DGA+EG LQQ+L+L+P TKVI++TGN D ++AVKAI +GAYDF QKP + L L++ Sbjct: 61 VDGATEGLEALQQILSLSPVTKVIVVTGNLDRSNAVKAIRLGAYDFFQKPFDPDVLALMI 120 Query: 121 QRAFYLHALQRENQRMQQAGGHTALGGLITRDAGMLAVCRSIEKVAPSSASVMLLGSSGT 180 RA ++H L+ EN+R+ + G ++L GLIT ML +CR+IEKVAP++A+V+LLG SGT Sbjct: 121 ARALHVHGLETENRRLTRQRG-SSLQGLITSSEPMLKICRTIEKVAPANATVLLLGESGT 179 Query: 181 GKEVLARALHQLSPRSGRRFMAINCAAIPENLLESELFGYEKGAFTGAAKQTIGKVELAH 240 GKEVLAR +H+LSPRS +RF+AINCAAIP+ LLESELFGYEKGAFTGAAKQTIG++E A+ Sbjct: 180 GKEVLARGVHELSPRSNKRFVAINCAAIPDTLLESELFGYEKGAFTGAAKQTIGRIEYAN 239 Query: 241 GGTFFLDEVGDLPMPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGG 300 GT FLDE+GDLPMPLQAKLLRFLQERVIER+GG EIPVDVRV+CATH++L + GG Sbjct: 240 EGTLFLDEIGDLPMPLQAKLLRFLQERVIERLGGRGEIPVDVRVVCATHRDLAAMIREGG 299 Query: 301 FREDLYYRLCEIIIKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYE 360 FREDLYYRL EI + IP L+ER GDAVLLA+ F++++ + GR + DA+AA+E + Sbjct: 300 FREDLYYRLSEISVNIPPLRERPGDAVLLAQAFLERYARELGRRIRGFTADALAALEAHP 359 Query: 361 WPGNVREMENCVMRAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKALT 420 WPGNVREMEN + RA IMADG QITA DLGL E P NLRQ R+ AER AV +AL Sbjct: 360 WPGNVREMENLIKRATIMADGSQITAADLGLDAGEVEPRPFNLRQARENAERIAVSRALA 419 Query: 421 RMDGNILKAAELLGVSRPTLYDLMSRHEIK 450 DG+I +AAELLG++RPTLYDLM++ +K Sbjct: 420 HSDGSIAQAAELLGITRPTLYDLMAKIGMK 449