BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0012.p (133 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776129.1| sensory transduction regulatory protein [Her... 270 4e-71 ref|YP_003777359.1| response regulator transcription regulator p... 92 3e-17 ref|ZP_03631702.1| response regulator receiver protein [bacteriu... 87 1e-15 ref|YP_004290318.1| response regulator receiver protein [Methano... 86 1e-15 ref|YP_003523953.1| response regulator receiver protein [Siderox... 84 9e-15 ref|YP_004040547.1| response regulator receiver protein [Methylo... 82 3e-14 ref|YP_003051979.1| response regulator receiver protein [Methylo... 81 4e-14 ref|YP_003776604.1| sensory transduction regulatory protein [Her... 80 8e-14 ref|NP_275588.1| sensory transduction regulatory protein [Methan... 79 2e-13 ref|YP_003849749.1| sensory transduction regulatory protein [Met... 79 2e-13 >ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] gb|ADJ64221.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 60 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL Sbjct: 8 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 67 Query: 61 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 120 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV Sbjct: 68 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 127 Query: 121 SQTVRRWLPGATP 133 SQTVRRWLPGATP Sbjct: 128 SQTVRRWLPGATP 140 >ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65451.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/127 (44%), Positives = 70/127 (55%), Gaps = 2/127 (1%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 60 M+DPSPE+ ELARF LWR L CAF +D A + L + + R+ P LILLE + Sbjct: 20 MIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGR-RSGDCATPSLILLESDM 78 Query: 61 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 120 +GLELL LRA +H PVV+F S D A AGA YL KP+D + V Sbjct: 79 ECGDGLELLRELRASSHLAEAPVVVF-PSHDTEGEREALDAGATAYLPKPIDGERYARCV 137 Query: 121 SQTVRRW 127 + V RW Sbjct: 138 VEMVERW 144 >ref|ZP_03631702.1| response regulator receiver protein [bacterium Ellin514] gb|EEF58011.1| response regulator receiver protein [bacterium Ellin514] Length = 150 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 11 LARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAH--PADLPCLILLEPRLPRMEGLEL 68 LAR L +N ++ D A + L + +H LP L+LL+ +LPRM+GLE+ Sbjct: 18 LARRALQKNSINNPLFVAHDGVEAIEFLMGTGSYSHRDARQLPALVLLDLKLPRMDGLEV 77 Query: 69 LHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELVSQTVRRWL 128 L LR+H TR LPVV+ +S ++ D R+ G N+Y+ KPVD F+E V Q WL Sbjct: 78 LRQLRSHELTRRLPVVVLTSSDEEQDVKRSYELGVNNYIRKPVDFNEFVETVRQLSLYWL 137 >ref|YP_004290318.1| response regulator receiver protein [Methanobacterium sp. AL-21] gb|ADZ09346.1| response regulator receiver protein [Methanobacterium sp. AL-21] Length = 153 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 2/130 (1%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLF--NPQARAHPADLPCLILLEP 58 +V+ +P EL L + L W +D A +F + +P DLP LILL+ Sbjct: 10 LVEDNPTDAELTMRALKKKNLINKLVWVKDGAEALDFIFAKGEFSDRNPEDLPKLILLDL 69 Query: 59 RLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFME 118 R+P+++GLE+LH ++ + +T+ +PVV+ +S++D D + G N Y+ KPV+ F+E Sbjct: 70 RMPKVDGLEVLHKIKENENTKNIPVVVLTSSKEDRDIVESYKLGVNSYVSKPVEFDEFIE 129 Query: 119 LVSQTVRRWL 128 VS W+ Sbjct: 130 AVSTMGFYWI 139 >ref|YP_003523953.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] gb|ADE11566.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] Length = 151 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 2/130 (1%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARA--HPADLPCLILLEP 58 +V+ +P ELA L R+ L W +D A +F A + A+ P +ILL+ Sbjct: 12 LVEDNPTDAELAIRALKRSNLANKLVWVKDGAEALDFIFAKGAYSDRQVANGPKVILLDL 71 Query: 59 RLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFME 118 RLP+++G+E+L M++A A T +PVV+ +S++D D A + G N Y+ KPV+ F + Sbjct: 72 RLPKVDGMEVLRMVKADARTHTIPVVVLTSSKEDRDVAESYQLGVNSYISKPVEFDEFAK 131 Query: 119 LVSQTVRRWL 128 VS+ WL Sbjct: 132 TVSELGLYWL 141 >ref|YP_004040547.1| response regulator receiver protein [Methylovorus sp. MP688] gb|ADQ85311.1| response regulator receiver protein [Methylovorus sp. MP688] Length = 148 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPAD-LPCLILLEPR 59 +V+ S E+ R L + L W +D + A +F A H P LILL+ + Sbjct: 11 LVEDSETDAEMTRRALKKIGLTNEILWLKDGQEALDYVFRQGAFEHRVKHSPKLILLDLK 70 Query: 60 LPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMEL 119 +PR++G+E+L ++ TR +PVVM +S ++ D ++ G N YLVKPV+ F+E Sbjct: 71 MPRVDGIEVLQQIKKSEQTRMIPVVMLTSSAEERDIVKSYELGVNSYLVKPVEFDQFVEE 130 Query: 120 VSQTVRRW 127 VS+ W Sbjct: 131 VSKVGCYW 138 >ref|YP_003051979.1| response regulator receiver protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51452.1| response regulator receiver protein [Methylovorus glucosetrophus SIP3-4] Length = 148 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPAD-LPCLILLEPR 59 +V+ S E+ R L + L W +D + A +F A H P LILL+ + Sbjct: 11 LVEDSETDAEMTRRALKKIGLTNEILWLKDGQEALDYVFRQGAFEHRVKHSPKLILLDLK 70 Query: 60 LPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMEL 119 +PR++G+E+L ++ TR +PVVM +S ++ D ++ G N YLVKPV+ F+E Sbjct: 71 MPRVDGIEVLQQIKKSEETRMIPVVMLTSSAEERDIVKSYELGVNSYLVKPVEFDQFVEE 130 Query: 120 VSQTVRRW 127 VS+ W Sbjct: 131 VSKVGCYW 138 >ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] gb|ADJ64696.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 1/125 (0%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 60 M++ + E+VELARF LWR+ C W+++A+ A L + + R A LP LILL+P + Sbjct: 8 MIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLH-RHRLDDARLPDLILLDPGM 66 Query: 61 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 120 G++ + ++A TR++PVV+F S + AGA+ YL+KP A +M+ V Sbjct: 67 MENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQYMQAV 126 Query: 121 SQTVR 125 + + Sbjct: 127 VECAQ 131 >ref|NP_275588.1| sensory transduction regulatory protein [Methanothermobacter thermautotrophicus str. Delta H] gb|AAB84951.1| sensory transduction regulatory protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 145 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAH--PADLPCLILLEP 58 +V+ +P EL L +N L W +D A +F + + P +LP LILL+ Sbjct: 9 LVEDNPTDAELTIRALKKNNLANKLHWVKDGAEALDYIFASGSYSDRDPENLPKLILLDL 68 Query: 59 RLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFME 118 R+P+++GLE+L ++ + T +PVV+ +S++D D + G N Y+ KPV+ F+ Sbjct: 69 RMPKVDGLEVLQEIKRNDSTSKIPVVVLTSSKEDRDIVESYKLGVNSYVSKPVEFDEFIS 128 Query: 119 LVSQTVRRWL 128 VS W+ Sbjct: 129 AVSTLGFYWM 138 >ref|YP_003849749.1| sensory transduction regulatory protein [Methanothermobacter marburgensis str. Marburg] gb|ADL58436.1| predicted sensory transduction regulatory protein [Methanothermobacter marburgensis str. Marburg] Length = 144 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLF--NPQARAHPADLPCLILLEP 58 +V+ +P EL L +N L W +D A +F + P +LP LILL+ Sbjct: 8 LVEDNPTDAELTIRALKKNNLANKLHWVKDGAEALDYIFARGSYSERDPDNLPKLILLDL 67 Query: 59 RLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFME 118 R+P+++GLE+L ++ + T +PVV+ +S++D D + G N Y+ KPV+ F+ Sbjct: 68 RMPKVDGLEVLQEIKRNESTSRIPVVVLTSSKEDRDIVESYKLGVNSYVSKPVEFDEFIN 127 Query: 119 LVSQTVRRWLPGATP 133 VS W+ P Sbjct: 128 AVSTLGFYWMIINQP 142