BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0006.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776123.1| polyferredoxin protein [Herbaspirillum serop... 894 0.0 ref|YP_004752454.1| ferredoxin [Collimonas fungivorans Ter331] >... 699 0.0 ref|ZP_02887724.1| putative nitrogen fixation protein VnfA [Burk... 669 0.0 ref|YP_003907510.1| putative nitrogen fixation protein VnfA [Bur... 664 0.0 ref|YP_004227646.1| nitrogen fixation protein VnfA [Burkholderia... 662 0.0 ref|ZP_02357965.1| hypothetical protein BoklE_21037 [Burkholderi... 653 0.0 ref|YP_001858179.1| putative nitrogen fixation protein VnfA [Bur... 652 0.0 ref|YP_001895039.1| nitrogen fixation protein VnfA [Burkholderia... 651 0.0 ref|YP_557882.1| putative nitrogen fixation protein VnfA [Burkho... 650 0.0 ref|ZP_06845253.1| putative nitrogen fixation protein VnfA [Burk... 650 0.0 >ref|YP_003776123.1| polyferredoxin protein [Herbaspirillum seropedicae SmR1] gb|ADJ64215.1| polyferredoxin protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/445 (99%), Positives = 444/445 (99%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV Sbjct: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ Sbjct: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR Sbjct: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 Query: 181 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKTE 240 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKTE Sbjct: 181 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKTE 240 Query: 241 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLTN 300 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLTN Sbjct: 241 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLTN 300 Query: 301 YPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIPL 360 YPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIPL Sbjct: 301 YPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIPL 360 Query: 361 AGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHWVQQ 420 AGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW QQ Sbjct: 361 AGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHWAQQ 420 Query: 421 CLAMLPLMGGLALVNTAWWLMFWGW 445 CLAMLPLMGGLALVNTAWWLMFWGW Sbjct: 421 CLAMLPLMGGLALVNTAWWLMFWGW 445 >ref|YP_004752454.1| ferredoxin [Collimonas fungivorans Ter331] gb|AEK61631.1| Ferredoxin [Collimonas fungivorans Ter331] Length = 498 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/450 (75%), Positives = 385/450 (85%), Gaps = 5/450 (1%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 MR H IR +QW +V VY LILVP+FLPLPDETAH+WSNLTLIAQFAFWGIWWPFVL+ Sbjct: 49 MRDHAKLIRWVQWGIVLVYGFLILVPIFLPLPDETAHIWSNLTLIAQFAFWGIWWPFVLI 108 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMVLMGRVWCGVLCPEGALTEFAS+HG G+AIP W+RWGGWPFVAFALTTIYGQMVSVYQ Sbjct: 109 SMVLMGRVWCGVLCPEGALTEFASRHGLGKAIPHWMRWGGWPFVAFALTTIYGQMVSVYQ 168 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGST GAI++GYLYGRDKRVWCKYLCPVNGVFGLLAKLAP HYKVNE AWR Sbjct: 169 YPKAVLLVLGGSTAGAIVVGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPFHYKVNETAWR 228 Query: 181 ASY----HPEHK-IIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQ 235 ASY H + + +IP+NCAPLVPLR MKGA+DCHMCGRCSGHRDAI LT+R PA E+V+ Sbjct: 229 ASYGTHSHTQGRTVIPVNCAPLVPLRAMKGAADCHMCGRCSGHRDAIELTWRAPAEEIVR 288 Query: 236 FGKTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPW 295 G+ NNLWESAL LYGL+GIAIGAFHW+ SPWF+ +KQ IATWLIDRDIMWPF T APW Sbjct: 289 HGEQHNNLWESALALYGLMGIAIGAFHWSASPWFVQVKQAIATWLIDRDIMWPFDTHAPW 348 Query: 296 WLLTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQ 355 W+ TNYP Q+DVF+WLDG +V+ YIL TGLVLG+ + L+FAL++R+LG RFNHLVQ Sbjct: 349 WVFTNYPAQNDVFSWLDGGLVIAYILTTGLVLGTALTLLFALSSRVLGGCDRKRFNHLVQ 408 Query: 356 ALIPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAG 415 + IPLAGCGVF+GLSATTISLLR EHLPV+WAND+RA LL A TLWS+WL W+V R+ Sbjct: 409 STIPLAGCGVFVGLSATTISLLRGEHLPVFWANDLRAILLIATTLWSVWLAWRVTGRYTS 468 Query: 416 HWVQQCLAMLPLMGGLALVNTAWWLMFWGW 445 ++ L+M P++ GLALVN AW LMFW W Sbjct: 469 APARRLLSMAPVIAGLALVNFAWLLMFWLW 498 >ref|ZP_02887724.1| putative nitrogen fixation protein VnfA [Burkholderia graminis C4D1M] gb|EDT06678.1| putative nitrogen fixation protein VnfA [Burkholderia graminis C4D1M] Length = 468 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/448 (71%), Positives = 380/448 (84%), Gaps = 3/448 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHG+ IR +QW+VVAVYALLI+VP +PLPD++AHLW+NLTL AQF FWGIWWPFVL+ Sbjct: 18 MQRHGSVIRGIQWVVVAVYALLIVVPAVMPLPDDSAHLWNNLTLAAQFVFWGIWWPFVLL 77 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASKHGRG+AIP W+RWGGWPFVAF +TTIYGQMVSVYQ Sbjct: 78 SMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPFVAFGITTIYGQMVSVYQ 137 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGST+ AI+IG LYGR+KRVWCKYLCPVNGVF LLA+LAP HYKV+EDAWR Sbjct: 138 YPKAVLLVLGGSTLAAIVIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 197 Query: 181 ASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALT+R P+ EVVQ G Sbjct: 198 RSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPSSEVVQLG 257 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 + N+W++AL+LYGLLGIAIGAFHWT S WFI +K ATWL+DRDI WP T APW+L Sbjct: 258 DKQANVWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWLVDRDITWPLQTNAPWFL 317 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+Q+DVF+WLDG MV+GYILAT LV G+ + ++ ATR LG++ R +HL Q L Sbjct: 318 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTALLVLMMGATRTLGRFSSVRLHHLTQGL 377 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IPLAG GVF+GLSATT+SLLRAEH+P++WA+DVR A+LA +WS WL W V R++ H+ Sbjct: 378 IPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIAILAIANVWSAWLAWLVTRRYSEHF 437 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWGW 445 V++ LAML + LA+V++AWWLMFWGW Sbjct: 438 VRRGLAMLWFIAALAVVDSAWWLMFWGW 465 >ref|YP_003907510.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1003] gb|ADN58219.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1003] Length = 468 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/448 (70%), Positives = 376/448 (83%), Gaps = 3/448 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHG+ IR +QW+VVAVYALLI+VP +PLPD++AHLW+NLTL AQF FWGIWWPFVL+ Sbjct: 18 MQRHGSVIRGIQWVVVAVYALLIIVPAVMPLPDDSAHLWNNLTLAAQFVFWGIWWPFVLL 77 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASKHGRG+AIP W+RWGGWPFVAF +TTIYGQMVSVYQ Sbjct: 78 SMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPFVAFGITTIYGQMVSVYQ 137 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGST+ AI+IG LYGR+KRVWCKYLCPVNGVF LLA+LAP HYKV+EDAWR Sbjct: 138 YPKAVLLVLGGSTLAAIVIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 197 Query: 181 ASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALT+R P+ EVVQ G Sbjct: 198 RSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPSSEVVQLG 257 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 ++W++AL+LYGLLGIAIGAFHWT S WFI +K ATWL+D DI WP T APW+L Sbjct: 258 DKHASVWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWLVDHDIAWPLDTNAPWFL 317 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+Q+DVF+WLDG MV+GYILAT LV G+ + ++ ATR+LG++ R +HL Q L Sbjct: 318 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTVLLILMTGATRMLGRFSSVRLHHLTQGL 377 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IPLAG GVF+GLSATT+SLLRAEH+P++WA+DVR A+LA LWS WL W V R+ + Sbjct: 378 IPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIAILAIANLWSAWLAWLVTRRYTERF 437 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWGW 445 VQ+ LAML LA+V++AWWLMFWGW Sbjct: 438 VQRALAMLWFAAALAVVDSAWWLMFWGW 465 >ref|YP_004227646.1| nitrogen fixation protein VnfA [Burkholderia sp. CCGE1001] gb|ADX54586.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1001] Length = 468 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/448 (70%), Positives = 375/448 (83%), Gaps = 3/448 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHG+ IR +QW+VVAVYALLI+VP +PLPD++AHLW+NLTL AQF FWGIWWPFVL+ Sbjct: 18 MQRHGSVIRGIQWVVVAVYALLIIVPAVMPLPDDSAHLWNNLTLAAQFVFWGIWWPFVLL 77 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASKHGRG+AIP W+RWGGWPFVAF +TTIYGQMVSVYQ Sbjct: 78 SMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPFVAFGITTIYGQMVSVYQ 137 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGSTV AI+IG LYGR+KRVWCKYLCPVNGVF LLA+LAP HYKV+EDAWR Sbjct: 138 YPKAVLLVLGGSTVAAIVIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 197 Query: 181 ASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALT+R P+ EVV+ G Sbjct: 198 RSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPSSEVVELG 257 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 + W++AL+LYGLLGIAIGAFHWT S WFI +K ATWL+D DI WP T APW+L Sbjct: 258 DKHASAWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWLVDHDITWPLQTNAPWFL 317 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+Q+DVF+WLDG MV+GYILAT LV G+ + L+ ATR+LG+ R +HL QAL Sbjct: 318 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTALLLLLMGATRMLGRLSSVRLHHLTQAL 377 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IPLAG GVF+GLSATT+SLLRAEH+P++WA+DVR +LA LWS WL W V R++ + Sbjct: 378 IPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIGILAIANLWSAWLLWLVTRRYSARF 437 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWGW 445 V++ LAML LA+V++AWWLMFWGW Sbjct: 438 VRRGLAMLWFAAALAVVDSAWWLMFWGW 465 >ref|ZP_02357965.1| hypothetical protein BoklE_21037 [Burkholderia oklahomensis EO147] ref|ZP_02365096.1| hypothetical protein BoklC_20459 [Burkholderia oklahomensis C6786] Length = 466 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/447 (69%), Positives = 373/447 (83%), Gaps = 4/447 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHGA IR +QW+VV VYA LILVP F PLPD++AHLWSNLTL AQF FWGIWWPFVL+ Sbjct: 20 MQRHGALIRGVQWVVVLVYAFLILVPAFTPLPDDSAHLWSNLTLAAQFVFWGIWWPFVLL 79 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL+EFASK GRGRAIPRW+RWGGWPFVAF LTTIYGQMVSVYQ Sbjct: 80 SMVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQ 139 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YP+AVLLVLGGST+ AI+IG+LYGR+KRVWC+YLCPVNGVF LLA+LAPL YKV+EDAWR Sbjct: 140 YPRAVLLVLGGSTLAAIVIGFLYGREKRVWCRYLCPVNGVFSLLARLAPLRYKVDEDAWR 199 Query: 181 ASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGA+ CHMCGRCSGHR AI LT R P+ EVV G Sbjct: 200 RSYKKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGHRGAIELTTRSPSEEVVALG 259 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 + + W++AL+LYGLLGIAIGAFHWTVSPWF+ IKQ +A WLID DIMWP T APW++ Sbjct: 260 DKQASGWDTALILYGLLGIAIGAFHWTVSPWFVQIKQSLAGWLIDHDIMWPLDTNAPWFI 319 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+ +DVF+WLDG++V+ YI+ TGL G+ +A++ A A +LG+++ R +HL QAL Sbjct: 320 FTHYPEHNDVFSWLDGSLVIAYIMGTGLAYGTALAVLLAGAVAMLGRFERARLHHLAQAL 379 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IPLAG GVF+GLSATT+SLLRAEH+P+ WA+DVR A+L LWS WL W+V R+AG W Sbjct: 380 IPLAGAGVFLGLSATTLSLLRAEHVPLDWASDVRIAILVGSNLWSAWLAWQVTGRYAG-W 438 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWG 444 ++ AML LA++++AWWLMFWG Sbjct: 439 ARRLFAMLWFGAALAVIDSAWWLMFWG 465 >ref|YP_001858179.1| putative nitrogen fixation protein VnfA [Burkholderia phymatum STM815] gb|ACC71133.1| putative nitrogen fixation protein VnfA [Burkholderia phymatum STM815] Length = 469 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/448 (69%), Positives = 370/448 (82%), Gaps = 3/448 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHGA IR +QW+VVAVYA LILVP F LP +TAHLWSNLTL AQF FWGIWWPFVL+ Sbjct: 19 MQRHGAAIRCIQWVVVAVYAFLILVPAFTELPGDTAHLWSNLTLAAQFVFWGIWWPFVLL 78 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASK+GRG AIPRW+RWGGWPFVAF LTTIYGQMVSVYQ Sbjct: 79 SMVMLGRVWCGVLCPEGALAEFASKYGRGWAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQ 138 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGST A++IG LYGR+KRVWCKYLCPVNGVF LLA+LAP HYKV+EDAWR Sbjct: 139 YPKAVLLVLGGSTFAAMVIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 198 Query: 181 ASYHPE---HKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGAS CHMCGRCSGHRDAIALT+R P+ EVV G Sbjct: 199 RSYKEGEHGHRVIPINCAPLVPLRNMKGASSCHMCGRCSGHRDAIALTWRAPSSEVVNLG 258 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 + + W++AL+LYGLLGIAIGAFHWT SPWFI IKQ +ATWL+DRDIMWP T APW+L Sbjct: 259 DRQASAWDTALILYGLLGIAIGAFHWTGSPWFIDIKQSLATWLVDRDIMWPLDTNAPWFL 318 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+Q+DVF+WLDG M++ YILAT V G+ + + A ATR+LG++ R +HL QAL Sbjct: 319 FTHYPEQNDVFSWLDGTMIIAYILATAAVYGTALFALLAGATRVLGRFSMTRLHHLAQAL 378 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IP+AG GVF+GLSATT+SLL+AEH+P+ WA+DVR A+L WS WL W + R+ Sbjct: 379 IPIAGTGVFLGLSATTLSLLKAEHVPLDWASDVRIAILVIANTWSAWLAWLITRRYTARV 438 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWGW 445 +++ L+M+ M LA+V++AWWLMFW W Sbjct: 439 LRRTLSMVWFMAALAVVDSAWWLMFWYW 466 >ref|YP_001895039.1| nitrogen fixation protein VnfA [Burkholderia phytofirmans PsJN] gb|ACD15815.1| putative nitrogen fixation protein VnfA [Burkholderia phytofirmans PsJN] Length = 464 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/448 (69%), Positives = 374/448 (83%), Gaps = 3/448 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHGA IR +QW+VVAVYA LILVP +PLPD++AHLW+NLTL AQF FWGIWWPFVL+ Sbjct: 14 MQRHGAAIRGIQWVVVAVYAFLILVPAVMPLPDDSAHLWNNLTLAAQFVFWGIWWPFVLL 73 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASK+GRGRAIP W+RWGGWPFVAF +TTIYGQMVSVYQ Sbjct: 74 SMVMLGRVWCGVLCPEGALAEFASKYGRGRAIPHWMRWGGWPFVAFGITTIYGQMVSVYQ 133 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGST A+IIG LYGR+KRVWCKYLCPVNGVF LLA+LAP HYKV+E+AWR Sbjct: 134 YPKAVLLVLGGSTFAAMIIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEEAWR 193 Query: 181 ASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALT+R P+ EVVQ G Sbjct: 194 RSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPSSEVVQLG 253 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 + N W++AL+LYGLLGIAIGAFHWT S WF+ +K +A WL+D DI WP T APW+L Sbjct: 254 DKQANPWDTALILYGLLGIAIGAFHWTASRWFVDLKIFLANWLVDHDITWPLDTNAPWFL 313 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+Q+DVF+WLDG MV+GYILAT LV G+ + ++ ATR+LG++ R +HL Q L Sbjct: 314 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTVLLVLLMGATRMLGRFNGVRLHHLTQGL 373 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IP+AG GVF+GLSATT+SLLRAEH+ ++WA+D+R A+LA LWS WL W V R++ + Sbjct: 374 IPIAGAGVFLGLSATTLSLLRAEHVSLWWASDMRIAILAIANLWSAWLAWLVTRRYSERF 433 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWGW 445 VQ+ LAM+ LA+V++AWWLMFWGW Sbjct: 434 VQRGLAMVWFAAALAVVDSAWWLMFWGW 461 >ref|YP_557882.1| putative nitrogen fixation protein VnfA [Burkholderia xenovorans LB400] gb|ABE29830.1| Putative nitrogen fixation protein VnfA [Burkholderia xenovorans LB400] Length = 468 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/448 (69%), Positives = 372/448 (83%), Gaps = 3/448 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHGA IR +QW+VVAVYA LILVP +PLP +TAHLW+NLTL AQF FWGIWWPFVL+ Sbjct: 18 MQRHGAAIRGIQWVVVAVYAFLILVPAVMPLPGDTAHLWNNLTLAAQFVFWGIWWPFVLL 77 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASK+GRG AIP W+RWGGWPFVAF LTTIYGQMVSVYQ Sbjct: 78 SMVMLGRVWCGVLCPEGALAEFASKYGRGWAIPHWMRWGGWPFVAFGLTTIYGQMVSVYQ 137 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGST A+IIG LYGR+KRVWCKYLCPVNGVF LLA+LAP HYKV+EDAWR Sbjct: 138 YPKAVLLVLGGSTFAAMIIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 197 Query: 181 ASYHPE---HKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGAS CHMCGRCSGHRDAIALT+R P+ EVV+ G Sbjct: 198 RSYKDGEHGHRVIPINCAPLVPLRNMKGASACHMCGRCSGHRDAIALTWRAPSSEVVELG 257 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 + N W++AL+LYGLLGIAIGAFHWT S WF+ +K ATWL+D DI WP T APW+L Sbjct: 258 DKQANAWDTALILYGLLGIAIGAFHWTASRWFVDLKMFFATWLVDHDITWPLDTNAPWFL 317 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+Q+DVF+WLDG MV+GYILAT LV G+ + ++ ATR+LG++ R +HL Q L Sbjct: 318 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTALLILLMGATRMLGRFNAVRLHHLTQGL 377 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IP+AG GVF+GLSATT+SLLRAEH+ ++WA+D+R A+LA LWS WL W V R++ + Sbjct: 378 IPIAGAGVFLGLSATTLSLLRAEHVSLWWASDMRIAILAIANLWSAWLAWLVTRRYSERF 437 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWGW 445 VQ+ LAM+ + LA+V++AWWLMFWGW Sbjct: 438 VQRGLAMVWFVAALAVVDSAWWLMFWGW 465 >ref|ZP_06845253.1| putative nitrogen fixation protein VnfA [Burkholderia sp. Ch1-1] gb|EFG67102.1| putative nitrogen fixation protein VnfA [Burkholderia sp. Ch1-1] Length = 468 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/448 (69%), Positives = 372/448 (83%), Gaps = 3/448 (0%) Query: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 M+RHGA IR +QW+VVAVYA LILVP +PLP +TAHLW+NLTL AQF FWGIWWPFVL+ Sbjct: 18 MQRHGAAIRGIQWVVVAVYAFLILVPAVMPLPGDTAHLWNNLTLAAQFVFWGIWWPFVLL 77 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASK+GRG AIP W+RWGGWPFVAF +TTIYGQMVSVYQ Sbjct: 78 SMVMLGRVWCGVLCPEGALAEFASKYGRGWAIPHWMRWGGWPFVAFGITTIYGQMVSVYQ 137 Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 YPKAVLLVLGGST A+IIG LYGR+KRVWCKYLCPVNGVF LLA+LAP HYKV+EDAWR Sbjct: 138 YPKAVLLVLGGSTFAAMIIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 197 Query: 181 ASYHPE---HKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFG 237 SY H++IPINCAPLVPLRNMKGAS CHMCGRCSGHRDAIALT+R P+ EVVQ G Sbjct: 198 RSYKDGEHGHRVIPINCAPLVPLRNMKGASACHMCGRCSGHRDAIALTWRAPSSEVVQLG 257 Query: 238 KTENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWL 297 + N W++AL+LYGLLGIAIGAFHWT S WF+ +K ATWL+D DI WP T APW+L Sbjct: 258 DKQANAWDTALILYGLLGIAIGAFHWTASRWFVDLKMFFATWLVDHDITWPLDTNAPWFL 317 Query: 298 LTNYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQAL 357 T+YP+Q+DVF+WLDG MV+GYILAT LV G+ + ++ ATR+LG++ R +HL Q L Sbjct: 318 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTALLILLMGATRMLGRFNAVRLHHLTQGL 377 Query: 358 IPLAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHW 417 IP+AG GVF+GLSATT+SLLRAEH+ ++WA+D+R A+LA LWS WL W V R++ + Sbjct: 378 IPIAGAGVFLGLSATTLSLLRAEHVSLWWASDMRIAILAIANLWSAWLAWLVTRRYSERF 437 Query: 418 VQQCLAMLPLMGGLALVNTAWWLMFWGW 445 VQ+ LAM+ + LA+V++AWWLMFWGW Sbjct: 438 VQRGLAMVWFVAALAVVDSAWWLMFWGW 465