BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0052.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773507.1| two component response regulator protein [He... 506 e-141 ref|YP_004751229.1| putative two-component response regulator co... 343 2e-92 ref|YP_001351845.1| two-components system response regulator [Ja... 340 1e-91 ref|YP_001098494.1| putative two-component response regulator co... 336 2e-90 ref|YP_001901221.1| two component Fis family transcriptional reg... 315 6e-84 ref|YP_004030517.1| hypothetical protein RBRH_01263 [Burkholderi... 314 7e-84 ref|YP_003905373.1| Fis family two component transcriptional reg... 312 3e-83 ref|ZP_04577442.1| two-components system response regulator [Oxa... 310 1e-82 ref|ZP_03264689.1| two component transcriptional regulator, Fis ... 310 2e-82 ref|ZP_04579596.1| two-components system response regulator [Oxa... 308 7e-82 >ref|YP_003773507.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61599.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV Sbjct: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE Sbjct: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 Query: 241 PGKLARKNH 249 PGKLARKNH Sbjct: 241 PGKLARKNH 249 >ref|YP_004751229.1| putative two-component response regulator containing CheY-like receiver [Collimonas fungivorans Ter331] gb|AEK60406.1| putative two-component response regulator containing CheY-like receiver [Collimonas fungivorans Ter331] Length = 240 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 178/247 (72%), Positives = 194/247 (78%), Gaps = 9/247 (3%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVVT AENAQQARE R GVPDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVTAAENAQQAREFRHGGVPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLS Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSQ 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 + R P P AA +G ++ + + E H T S Sbjct: 121 GPKTARAPTLYPQPAAA--SGESN-----DTVVTAGVFNNPASSEAAHITTMPSVAVA-- 171 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 +++ + SF LPLREARDAFERAYFEYHL+RE+GSMTRVAE+TGLERTHLYRKLKQLGV+ Sbjct: 172 SESLFSSSFGLPLREARDAFERAYFEYHLIRESGSMTRVAEKTGLERTHLYRKLKQLGVD 231 Query: 241 PGKLARK 247 PGKL++K Sbjct: 232 PGKLSKK 238 >ref|YP_001351845.1| two-components system response regulator [Janthinobacterium sp. Marseille] gb|ABR91059.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 238 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 182/250 (72%), Positives = 197/250 (78%), Gaps = 17/250 (6%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG+LTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQGL+ Sbjct: 61 VTLLKEWQRDGMLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGLTR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHA---APVAAYAPALGGEPLHHGTTASTPF 177 +E R A PV A + A D H P+ A + PA+ PL +A T F Sbjct: 121 GQEVTRIASM---PVRAPI-AATDSHHLPQDKVLPASSSQMYPAIASAPL---MSADTQF 173 Query: 178 GQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQL 237 SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQL Sbjct: 174 -------FTASFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQL 226 Query: 238 GVEPGKLARK 247 GVEPGK+A+K Sbjct: 227 GVEPGKIAKK 236 >ref|YP_001098494.1| putative two-component response regulator containing CheY-like receiver [Herminiimonas arsenicoxydans] emb|CAL60365.1| putative two-component response regulator containing CheY-like receiver [Herminiimonas arsenicoxydans] Length = 236 Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 176/247 (71%), Positives = 193/247 (78%), Gaps = 12/247 (4%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQG+S Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGISR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 +E R A PV A + +H H + ++ P G + + T+ Sbjct: 121 GQEVSRVASI---PVRAPI------IHNDTHLSSDRSHQPLAG---ISYPTSTPVSLMSA 168 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQLGVE Sbjct: 169 DTQFFTTSFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQLGVE 228 Query: 241 PGKLARK 247 PGK+A+K Sbjct: 229 PGKIAKK 235 >ref|YP_001901221.1| two component Fis family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD28789.1| two component transcriptional regulator, Fis family [Ralstonia pickettii 12J] Length = 236 Score = 315 bits (806), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 167/240 (69%), Positives = 176/240 (73%), Gaps = 14/240 (5%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEILGDEGHVV AENAQ+ARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILGDEGHVVEVAENAQRAREYRANATPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW GLLTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLL AV+QGLS Sbjct: 61 VTLLKEWASQGLLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLTAVEQGLSR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 S+E R A P AA V G A + P A + G P + F Sbjct: 121 SKEKPRSA----TPAAAPVAGLAGAMPNAAAGTPAALERTDINGVPTRAAESGGMQF--- 173 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 SFD+PLREARD FERAYFEYHL RE GSMTRVAE+TGLERTHLYRKLKQLGVE Sbjct: 174 -------SFDMPLREARDLFERAYFEYHLQREGGSMTRVAEKTGLERTHLYRKLKQLGVE 226 >ref|YP_004030517.1| hypothetical protein RBRH_01263 [Burkholderia rhizoxinica HKI 454] emb|CBW76373.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 228 Score = 314 bits (805), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 174/245 (71%), Positives = 180/245 (73%), Gaps = 23/245 (9%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGH V AENAQQARE RQ PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHAVDVAENAQQAREYRQQSTPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLL AV+QGL+H Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEQGLAH 120 Query: 121 SREA--VRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFG 178 A A P P V GAA A PV ALG TAS Sbjct: 121 GEAAPLATAASNPPMPATQTVAGAA--------ALPV---TDALG--------TASNGVA 161 Query: 179 QVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLG 238 V A ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQLG Sbjct: 162 GVPTTA--ISFDIPLRDARDAFERAYFEYHLSRENGSMTRVAEKTGLERTHLYRKLKQLG 219 Query: 239 VEPGK 243 VE GK Sbjct: 220 VELGK 224 >ref|YP_003905373.1| Fis family two component transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN56082.1| two component transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] Length = 229 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 170/243 (69%), Positives = 182/243 (74%), Gaps = 18/243 (7%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGHVV AENAQQARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHVVEAAENAQQAREFRLRQAPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLLKAV+QGL+ Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLKAVEQGLAR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 AV+P G A L A AA P L + HG+ G + Sbjct: 121 GTAAVQPGG----------AAAKSALPMNSSAVASAAALPMLSAD--GHGS------GVL 162 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 A A+ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQLGV+ Sbjct: 163 AAQTASISFDIPLRDARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVD 222 Query: 241 PGK 243 GK Sbjct: 223 LGK 225 >ref|ZP_04577442.1| two-components system response regulator [Oxalobacter formigenes HOxBLS] gb|EEO28404.1| two-components system response regulator [Oxalobacter formigenes HOxBLS] Length = 233 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 175/253 (69%), Positives = 191/253 (75%), Gaps = 24/253 (9%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEIL DEGHVV TAENAQQARE R A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILSDEGHVVQTAENAQQAREARAAETPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG LTMPVIMMSGHATIDTAVEATRIGA+NFLEKPIALQKLL+AVQQGL+ Sbjct: 61 VTLLKEWQRDGYLTMPVIMMSGHATIDTAVEATRIGAMNFLEKPIALQKLLQAVQQGLAR 120 Query: 121 SREAVRP----AGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTP 176 +E RP +PAP + + G G PV A AP + +ST Sbjct: 121 HQEKNRPIPVTIAQQPAPASELRTGITTG------NVPVQAPAPVINN--------SST- 165 Query: 177 FGQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQ 236 N A +SFDLPLREARD FER YFE+HL +E GSMTRVAE+TGLERTHLYRKLKQ Sbjct: 166 -----INTALLSFDLPLREARDMFERIYFEHHLAQEGGSMTRVAEKTGLERTHLYRKLKQ 220 Query: 237 LGVEPGKLARKNH 249 LGVEP K +K++ Sbjct: 221 LGVEPVKAPKKHN 233 >ref|ZP_03264689.1| two component transcriptional regulator, Fis family [Burkholderia sp. H160] gb|EEA03669.1| two component transcriptional regulator, Fis family [Burkholderia sp. H160] Length = 229 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 166/243 (68%), Positives = 179/243 (73%), Gaps = 18/243 (7%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGHVV AENAQ+ARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHVVEAAENAQEAREFRLRQAPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLLKAV+QGL+ Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLKAVEQGLAR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 AV P G P L + AA P L + + G A+ Sbjct: 121 GNAAVLPGGVATKP----------ALPVSASSVASAAALPMLSADGVSGGALAA------ 164 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 A+ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQLGV+ Sbjct: 165 --QTASISFDIPLRDARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVD 222 Query: 241 PGK 243 GK Sbjct: 223 LGK 225 >ref|ZP_04579596.1| two-components system response regulator [Oxalobacter formigenes OXCC13] gb|EEO30569.1| two-components system response regulator [Oxalobacter formigenes OXCC13] Length = 233 Score = 308 bits (788), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 170/250 (68%), Positives = 187/250 (74%), Gaps = 20/250 (8%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEIL DEGHVV TAENAQQARE R A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILSDEGHVVQTAENAQQAREARAAETPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG LTMPVIMMSGHATIDTAVEATRIGA+NFLEKPIALQKLL+AVQQGL+ Sbjct: 61 VTLLKEWQRDGNLTMPVIMMSGHATIDTAVEATRIGAMNFLEKPIALQKLLQAVQQGLAR 120 Query: 121 SREAVRPAGYRPAPVAAV--VNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFG 178 ++E R P +V V + ++ + AP AST Sbjct: 121 NQEKSRMVATPIMPSVSVTEVRTTSTVINNVQMQAP------------------ASTTGN 162 Query: 179 QVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLG 238 N + +SFDLPLREARD FER YFE+HL +E GSMTRVAE+TGLERTHLYRKLKQLG Sbjct: 163 TSLINTSLLSFDLPLREARDMFERIYFEHHLAQEGGSMTRVAEKTGLERTHLYRKLKQLG 222 Query: 239 VEPGKLARKN 248 VEP K ++KN Sbjct: 223 VEPVKASKKN 232