BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0002.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_981552.1| cyclic nucleotide-binding domain-containing pro... 184 8e-45 ref|YP_547041.1| cyclic nucleotide-binding domain-containing pro... 179 2e-43 ref|YP_004753221.1| cyclic nucleotide-binding domain (cNMP-BD) p... 174 5e-42 emb|CAZ86974.1| putative Bacterial regulatory protein, Crp [Thio... 167 7e-40 ref|ZP_08824171.1| putative transcriptional regulator, Crp/Fnr f... 162 3e-38 ref|ZP_04760991.1| putative transcriptional regulator, Crp/Fnr f... 161 4e-38 ref|ZP_08769854.1| putative transcriptional regulator, Crp/Fnr f... 159 2e-37 ref|ZP_08635265.1| cyclic nucleotide-binding domain-containing p... 159 3e-37 ref|YP_004783817.1| putative Crp/Fnr family transcriptional regu... 157 1e-36 ref|ZP_08621609.1| cAMP-binding protein [Idiomarina sp. A28L] >g... 156 1e-36 >ref|YP_981552.1| cyclic nucleotide-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM36631.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Polaromonas naphthalenivorans CJ2] Length = 247 Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 122/185 (65%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP G IS+++L D TP EV MVGREGM G ALG+ + HA V G AW I+T Sbjct: 45 VYFPTRGYISLVALVDGTPGVEVGMVGREGMLGAQLALGVVTAPLHALVQGSGMAWRIAT 104 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 F+ EL ++ L+ L+RY+ +++ Q ++ C++FH + RLA+WLLMSQDR++ F Sbjct: 105 VPFKRELARSPALRRGLHRYLYVLMVQQATSAACLRFHLIGPRLARWLLMSQDRAHCDSF 164 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181 +T E LA +LG+RRVG+TAAA+ L+ +G+I+Y RG + +L+R LE ACSCY + Sbjct: 165 HLTHEFLAYMLGMRRVGVTAAASALQRSGLIQYHRGEIRVLDRSGLEAAACSCYATSQQT 224 Query: 182 YTKTL 186 Y L Sbjct: 225 YNDLL 229 >ref|YP_547041.1| cyclic nucleotide-binding domain-containing protein [Polaromonas sp. JS666] gb|ABE42143.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Polaromonas sp. JS666] Length = 237 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 82/167 (49%), Positives = 114/167 (68%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP G IS+++L D +P EV MVGREGM G ALG+ ++ HA V PG AW + T Sbjct: 45 VYFPTEGFISLVALLDGSPGVEVGMVGREGMLGAQVALGVVTSPLHALVQGPGAAWRVDT 104 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 AFR EL + LQ LNRY+ +++ Q ++ C++FH + RLA+WLLM+QDR+++ F Sbjct: 105 GAFRKELAASAALQRGLNRYLYVLMAQQAASAACLRFHLIGPRLARWLLMTQDRAHSDSF 164 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLE 168 +TQ LA +LGVRRVG+TAAA L+ +G+IEY RG +L+R LE Sbjct: 165 HVTQAFLAYMLGVRRVGVTAAAGALQRSGLIEYHRGDFRVLDRSGLE 211 >ref|YP_004753221.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Collimonas fungivorans Ter331] gb|AEK62398.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Collimonas fungivorans Ter331] Length = 290 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 119/185 (64%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP IS+++ + +P EV MVGREGM G+ ALG+ + HA V PG A I Sbjct: 105 VYFPTEASISLVARIEGSPGVEVGMVGREGMLGVQMALGVATAPVHAVVQSPGAARRIGV 164 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 FR EL + L ++ Y+ + + Q+ ++ C++FH + RLA+WLLMSQDR+++ F Sbjct: 165 NDFRGELAHSPALLRAMHHYLYVRMAQMATSAACLRFHLIGPRLARWLLMSQDRAHSDSF 224 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181 +T E LA++LGVRR GITAAA+ L+ +G+IEY RG++ +L+R LE AC CY E ++ Sbjct: 225 RVTHEFLAAMLGVRREGITAAASALQRSGLIEYRRGNLKVLDRLGLEAAACGCYAVERQV 284 Query: 182 YTKTL 186 Y L Sbjct: 285 YAALL 289 >emb|CAZ86974.1| putative Bacterial regulatory protein, Crp [Thiomonas sp. 3As] Length = 250 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 117/184 (63%) Query: 3 YFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTA 62 YFP+NG +S+L A EV MVGREGM G ALG+ +T A V G AW I + Sbjct: 53 YFPVNGYVSLLQQTGAQAPLEVGMVGREGMLGAELALGVTTTPLLALVRGSGAAWRIEQS 112 Query: 63 AFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFS 122 A + L Q+ L+ L+RY+ +++ Q + C +FH + RLA+ LLMSQDR++A F Sbjct: 113 ALQEALAQSLALRQGLHRYVYVLLAQRAAAVSCQRFHLIEARLARQLLMSQDRAHADTFH 172 Query: 123 ITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLY 182 +T E LA +LGVRRVG+T AA +L+ +G+I Y RG + ++NR L+ +ACSCY + ++Y Sbjct: 173 VTHEDLAQMLGVRRVGVTVAAGELQRSGLIAYHRGDLRVVNRIALQSRACSCYALDQRIY 232 Query: 183 TKTL 186 ++ Sbjct: 233 DASM 236 >ref|ZP_08824171.1| putative transcriptional regulator, Crp/Fnr family [Thiorhodococcus drewsii AZ1] gb|EGV30064.1| putative transcriptional regulator, Crp/Fnr family [Thiorhodococcus drewsii AZ1] Length = 238 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 114/185 (61%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP + +S+++ EV +VG EGM G P LG++ T+ V PG AW +S+ Sbjct: 53 VYFPTDSFVSLVAPPADHTGLEVRLVGNEGMIGTPLILGVEFTQIRTFVQGPGPAWRLSS 112 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 F ++Q+ LQ L+RY+++++ Q C +FH + RLA+WLLM+QDR+++ F Sbjct: 113 EGFGEAMHQSSVLQARLHRYLDVLMNQSIQLLTCTRFHRVEARLARWLLMTQDRAHSNHF 172 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181 +T E LA LLGVRRVG+T AA+ L+ +I+Y RG VT+L+R L+ AC CY + Sbjct: 173 HVTHELLALLLGVRRVGVTKAASALQERQLIQYRRGEVTVLDRTGLQSAACGCYGAAEAM 232 Query: 182 YTKTL 186 Y + L Sbjct: 233 YEQVL 237 >ref|ZP_04760991.1| putative transcriptional regulator, Crp/Fnr family [Acidovorax delafieldii 2AN] gb|EER62308.1| putative transcriptional regulator, Crp/Fnr family [Acidovorax delafieldii 2AN] Length = 233 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 114/184 (61%) Query: 3 YFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTA 62 +FP+ G +S++ D+ P EV MVG E M G LGL +T + A V G +W I Sbjct: 46 HFPMEGFLSLVIDVDSHPPLEVGMVGAEAMLGSELILGLAATPWRALVQGAGSSWRIGAR 105 Query: 63 AFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFS 122 R ++N L+ +L + + + Q C ++H ++ RLA+WLLMSQDRS ++ F Sbjct: 106 ELRAQINAIPALETLLQACLLMRLHQQTLAAACQRYHLIAPRLARWLLMSQDRSRSESFH 165 Query: 123 ITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLY 182 +TQE +A +LGVRRVG+T AA+ + +G+I Y RG +T+LNRK LE ACSCY+ + ++Y Sbjct: 166 VTQEFMALMLGVRRVGVTEAASHFQDSGLIAYHRGELTVLNRKALEAAACSCYVADKEIY 225 Query: 183 TKTL 186 + + Sbjct: 226 NRLM 229 >ref|ZP_08769854.1| putative transcriptional regulator, Crp/Fnr family [Thiocapsa marina 5811] gb|EGV19448.1| putative transcriptional regulator, Crp/Fnr family [Thiocapsa marina 5811] Length = 236 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 107/183 (58%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP + S+++ EV +VGREGM G P LG+ T V G W ++ Sbjct: 51 VYFPTDCYFSLVTRPIDHAGLEVRLVGREGMVGTPLVLGIDVTLLRTVVRGAGPTWRMTA 110 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 F L ++ LQL LNRY+ +V Q+ C +FH L RLA+WLLM+QDR+++ F Sbjct: 111 ERFPEALRKSTALQLTLNRYLFVVTNQVEQMVACTRFHVLEARLARWLLMTQDRAHSDHF 170 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181 T E LA LLGVRRVG+T AAT L+ +I YSRG + +L+R L+ AC+CY + + Sbjct: 171 HATHEFLALLLGVRRVGVTKAATALQKRNLIHYSRGDIRVLDRPGLQTAACACYGESEAM 230 Query: 182 YTK 184 Y + Sbjct: 231 YEQ 233 >ref|ZP_08635265.1| cyclic nucleotide-binding domain-containing protein [Halomonas sp. TD01] gb|EGP21488.1| cyclic nucleotide-binding domain-containing protein [Halomonas sp. TD01] Length = 238 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 111/184 (60%) Query: 3 YFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTA 62 YFPIN IS + + + EV+M GREGM GI LG++ A V G A I+ A Sbjct: 51 YFPINSFISQIVILNVDSRLEVAMAGREGMLGISLVLGVEEAPLLALVQGEGLALRINAA 110 Query: 63 AFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFS 122 +F+ L + L L RY+ +V+ QL ++ CI FH + ERLA+WLLM+ DR+ Sbjct: 111 SFQRLLLSSPVLHQRLKRYLYVVMNQLANSAACIHFHRIEERLARWLLMTHDRAKTDSLQ 170 Query: 123 ITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLY 182 +T E LA +LGVRR GIT AA L++ G+I Y RG + +++R+ L + +C CY D+ LY Sbjct: 171 LTHEFLAMMLGVRRAGITLAAIALQTRGLIRYRRGEIIVIDRQGLIEASCKCYADDCALY 230 Query: 183 TKTL 186 +K L Sbjct: 231 SKIL 234 >ref|YP_004783817.1| putative Crp/Fnr family transcriptional regulator [Acidithiobacillus ferrivorans SS3] gb|AEM47491.1| putative transcriptional regulator, Crp/Fnr family [Acidithiobacillus ferrivorans SS3] Length = 244 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 107/174 (61%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP +I+ ++ D V MVG EGM GIP LG ++ A V G ++ Sbjct: 53 VYFPTGSIIAQITPIDRHAGLGVGMVGNEGMVGIPLILGASTSLLPAVVQSAGPTLRMTA 112 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 FR EL + LQ +LNRY+ +V+ QL T C FH + RLA+WLLM+QDRS++ +F Sbjct: 113 VLFRRELQGSPVLQSLLNRYLYVVMTQLARTAACSHFHVVEARLARWLLMTQDRSHSNQF 172 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCY 175 +T + LA +LG RRVG+T AA L++ G+I Y RG VT+L+R LE +C+CY Sbjct: 173 HVTHKFLAGMLGARRVGVTTAALALQNRGLIRYCRGDVTVLDRAGLEDASCACY 226 >ref|ZP_08621609.1| cAMP-binding protein [Idiomarina sp. A28L] gb|EGN75255.1| cAMP-binding protein [Idiomarina sp. A28L] Length = 252 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 109/174 (62%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP++G IS+++ E+S++G EGM G+ LG+ A V G AW ++ Sbjct: 50 LYFPMSGFISLVTKLSGHKPLEMSVIGNEGMLGVTMVLGVSEAPMQAVVQGKGTAWRLNV 109 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 A + L+Q L+ VL +Y+ + + QL + C FH L +RLA+WLL+SQDR+++ EF Sbjct: 110 AELQQVLHQCPQLRHVLKKYLFVSLAQLSQSAACAHFHALDQRLARWLLLSQDRAHSNEF 169 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCY 175 +T + LA +LGVRR G+T AA +++ +IEYSRG + I NR LEK +C CY Sbjct: 170 HLTHQFLADMLGVRRSGVTVAAGRMQERKLIEYSRGKIAITNRSALEKASCECY 223