BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0315.p (387 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 697 0.0 ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 500 e-139 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 409 e-112 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 323 3e-86 ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum... 299 7e-79 ref|YP_004754680.1| outer membrane protein [Collimonas fungivora... 284 2e-74 ref|YP_003776283.1| outer membrane porin [Herbaspirillum seroped... 251 1e-64 ref|ZP_03575533.1| outer membrane porin [Burkholderia multivoran... 216 5e-54 ref|YP_001118371.1| porin [Burkholderia vietnamiensis G4] >gi|13... 215 1e-53 ref|YP_772345.1| porin [Burkholderia ambifaria AMMD] >gi|1152804... 214 2e-53 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/387 (97%), Positives = 382/387 (98%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 Query: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF Sbjct: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 Query: 121 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN Sbjct: 121 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 Query: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANT 240 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANT Sbjct: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANT 240 Query: 241 ALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATATLGNAQKVDTYEIG 300 ALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATATL NAQK DTYEIG Sbjct: 241 ALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATATLANAQKADTYEIG 300 Query: 301 TAYSLSPSLKLLAAVDHSRATFTGVDGKGKLTQISLGADYSLSKRTDLYAFVSNMRATDI 360 TAYSLSPSLKLLAAVDHSRATF GV+ KGKLTQISLGADY LSKRTDLYAFVSNMRA+DI Sbjct: 301 TAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDLYAFVSNMRASDI 360 Query: 361 QNPGVTGGATGSDASQTAVITGIRHKF 387 QNPGVTGGATGSDASQTA+ITGIRHKF Sbjct: 361 QNPGVTGGATGSDASQTAIITGIRHKF 387 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 279/398 (70%), Positives = 316/398 (79%), Gaps = 19/398 (4%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTG+ Y SKV A TGSKF +NSG Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGVVYQSKV----ATPTGGTGSKFSLNSG 56 Query: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 VIQGSRIGFKG EDLGGGLSAVFNLE GF++D G L D+ TS+ LFRRKSVVGL+G F Sbjct: 57 VIQGSRIGFKGTEDLGGGLSAVFNLEAGFSNDTGALD--DSKTSNTLFRRKSVVGLAGNF 114 Query: 121 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 G+VLLGRQTDFADTIS+YT+V DFGG +G +L+RL+GTRTNNS+SYTTANL+GFTGN Sbjct: 115 GSVLLGRQTDFADTISSYTSVQDFGGWTGAAGHNLDRLEGTRTNNSISYTTANLNGFTGN 174 Query: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANT 240 L+YGFGE AG+TSAGQA+G+GGKYDNGPLGLGINYYQSKAGSTP+D SL+ A G TN T Sbjct: 175 LMYGFGETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAGSTPADASLLAATG-TNQFT 233 Query: 241 ALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLK-----------GTPTVATATLG 289 G+TA K LNV ASYQFGPARVY N+SRVKQDL T++ TL Sbjct: 234 NGTNNGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISNRTLA 293 Query: 290 NAQKVDTYEIGTAYSLSPSLKLLAAVDHSRATFTGVDGKGKLTQISLGADYSLSKRTDLY 349 + K D YEIGTAYSLSPSLKLLAAVDH+RA F GV GK KLTQ+SLG DY LSKRTDLY Sbjct: 294 ASNKADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLGTDYWLSKRTDLY 353 Query: 350 AFVSNMRATDIQNPGVTGGATGSDASQTAVITGIRHKF 387 AF++ +ATD+ NPGV ++G+D +Q AV GIRHKF Sbjct: 354 AFLAYSKATDLNNPGV-ADSSGTDGNQGAVAVGIRHKF 390 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 242/400 (60%), Positives = 289/400 (72%), Gaps = 23/400 (5%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 MKKSL+ALAVLGA AGAAQAQSSVTIYGIVDTGI Y+SK TGSKF INSG Sbjct: 1 MKKSLIALAVLGAIAGAAQAQSSVTIYGIVDTGIVYTSKA----LTSTGGTGSKFSINSG 56 Query: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 +IQGSR+GFKGVEDLGGGL A+F LE GF +D GGLQG T+ LFRRKSVVGL G F Sbjct: 57 IIQGSRLGFKGVEDLGGGLKALFQLEAGFNNDTGGLQGDKGTTT--LFRRKSVVGLGGNF 114 Query: 121 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 G+VLLGRQTD D +S +T+V DFGGV + G +L+RL+GTRTNNS+ Y T ++SGFTG+ Sbjct: 115 GSVLLGRQTDILDDVSQWTSVQDFGGVTGSVGHNLDRLEGTRTNNSIRYNTPDVSGFTGS 174 Query: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGS-TPSDTSLIPAAGATNAN 239 LIYGFGE AG+TSAGQ++G G +Y NGPLGL YYQSK GS T SDTSLI + N + Sbjct: 175 LIYGFGETAGQTSAGQSFGAGAQYANGPLGLFAAYYQSKLGSPTASDTSLINGSQVANFS 234 Query: 240 TALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATA--------TLG-- 289 G +G+TALK+ ++ ASYQ GPAR+Y N+SR KQ L + AT T+G Sbjct: 235 ---GKSGDTALKTFSIGASYQAGPARLYGNWSRTKQPLATSSNSATTGILQPGSFTVGSF 291 Query: 290 NAQKVDTYEIGTAYSLSPSLKLLAAVDHSRATF--TGVDGKGKLTQISLGADYSLSKRTD 347 N K D +E+G Y+++ L LLA+V +++ TF G D KGKLTQ +LG DY LSKRTD Sbjct: 292 NNTKADIFELGVNYAVTAPLHLLASVQYNKLTFADAGAD-KGKLTQFNLGTDYFLSKRTD 350 Query: 348 LYAFVSNMRATDIQNPGVTGGATGSDASQTAVITGIRHKF 387 LYAFVSN+RA D NPGV G + G +QTAV GIRHKF Sbjct: 351 LYAFVSNLRAKDAVNPGVYGDSLGDTGNQTAVAVGIRHKF 390 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 195/405 (48%), Positives = 252/405 (62%), Gaps = 53/405 (13%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 MKK++ ALA LG AQAQ++VTIYG++D G+ Y+SKVG S+ ++SG Sbjct: 1 MKKTVFALAALGLIGANAQAQTNVTIYGVIDAGLTYTSKVG-------PKNDSRISLDSG 53 Query: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 + SRIGF+G EDLGGGL A+F LE GF +DDG L T+S LF RK+VVGLSG F Sbjct: 54 DMATSRIGFRGTEDLGGGLKAIFQLENGFNADDGSL-----ATASTLFDRKAVVGLSGSF 108 Query: 121 GTVLLGRQTDFADTI-SAYTAVADFG--GVVANSGSSLNRLQGTRTNNSVSYTTANLSGF 177 GTV LGRQTD+ D I S YT+V FG G+ A ++L+R+ G R NNS+ Y +ANLSGF Sbjct: 109 GTVTLGRQTDYLDDIGSKYTSVQTFGSNGIKAGHFNNLDRVGGVRANNSIRYDSANLSGF 168 Query: 178 TGNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSK--AGSTPSDTSLIPAAGA 235 TG+L YGFGE AG+TSAGQ++G+ G Y NGP G+G+ Y+Q+K A + PS Sbjct: 169 TGSLFYGFGEVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTKLAADALPSK--------- 219 Query: 236 TNANTALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLK------GTPTVATATLG 289 AG+T LK+ + ASYQ GPA++Y +S+ K+ L G + TAT Sbjct: 220 ---------AGDTDLKTFTLGASYQAGPAKIYGAWSQTKRPLAAALAATGLVNITTAT-- 268 Query: 290 NAQKVDTYEIGTAYSLSPSLKLLAAVDHSRATF---TGVDGKGKLTQISLGADYSLSKRT 346 K + +++G YSLS +L LLA+V + RA T KGK TQ++LG DY LSKRT Sbjct: 269 ---KANIFDLGVDYSLSGNLHLLASVIYDRADLSRKTAGSTKGKTTQLNLGVDYYLSKRT 325 Query: 347 DLYAFVSNMRATDIQNPGVTGGATGS----DASQTAVITGIRHKF 387 DLYA +N RA D+ NPGV A S D SQ G+RHKF Sbjct: 326 DLYALYTNQRANDVNNPGVINAAYSSAPADDTSQNVFRVGLRHKF 370 >ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62512.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 187/417 (44%), Positives = 250/417 (59%), Gaps = 42/417 (10%) Query: 1 MKKSLLALAVLGAFAGAAQAQSS-VTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINS 59 MKKSLLALAVLGAFAGAA AQSS +TIYG +D + Y++K+ N TGS + S Sbjct: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKN----TGSLTAVES 56 Query: 60 GVIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGG 119 G+++GSR+G KG EDLGGGL AVF LE GF D G +A ++ R++ VGLSG Sbjct: 57 GLVKGSRLGIKGSEDLGGGLKAVFTLENGFNVDTG-----EAGQGKLMWGRQTTVGLSGN 111 Query: 120 FGTVLLGRQTDFADTISAYTAVADFG--GVVANSGSSLNRLQGTRTNNSVSYTTANLSGF 177 FGTVL+GRQ D + I + FG G V + G L+R G R NNS+ Y + N +G Sbjct: 112 FGTVLVGRQNDPLNDIGGIASAGGFGVPGTVHSKG--LDRTDGQRLNNSIRYNSPNFNGL 169 Query: 178 TGNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATN 237 + + IYGFGEQ G+ G++ G+G +Y NGPL LG+ Y+QSK G +S + A A N Sbjct: 170 SFSGIYGFGEQVGRAVGGRSIGLGSQYVNGPLSLGLGYFQSKMGGGSDGSSDVNAKAACN 229 Query: 238 ANTALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLK------------------- 278 AG+T LK+ + A+YQFGPA+VY +S V+ L Sbjct: 230 GAGEKDHAGDTCLKTWTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNFGAMYDAK 289 Query: 279 -GT---PTVATA-TLG--NAQKVDTYEIGTAYSLSPSLKLLAAVDHSRATFTGVDGKGKL 331 GT P+ ATA ++G N + T++IG +Y L PSL L++AV H+RA F G G+L Sbjct: 290 TGTGYNPSDATAFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKFVGA-ASGRL 348 Query: 332 TQISLGADYSLSKRTDLYAFVSNMRATDIQNPGVTGG-ATGSDASQTAVITGIRHKF 387 Q++LGA Y LSKRT YA V N+R++D+ N G++ G D SQTA+ TG+ H F Sbjct: 349 LQLNLGAKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 >ref|YP_004754680.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42405.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63857.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 371 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 193/403 (47%), Positives = 242/403 (60%), Gaps = 48/403 (11%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATG-SKFGINS 59 MKKSL+AL VLGA AGAAQAQSSVTIYG VD G+ YS+ + + G SKFG+ S Sbjct: 1 MKKSLIALTVLGAIAGAAQAQSSVTIYGTVDAGVTYSNNNVPANNANDGRLGGSKFGVGS 60 Query: 60 GVIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGG 119 G I SRIGFKGVEDLGGGL A+F LE GF +D GG + +LF RKSVVGL G Sbjct: 61 GNIDTSRIGFKGVEDLGGGLKALFQLEAGFNTDTGGFE-----QDKSLFNRKSVVGLGGN 115 Query: 120 FGTVLLGRQTDFADTI-SAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFT 178 FG+VLLGRQ+D D YT+V DFG V S +RL+G+RT NS+ Y + + SG T Sbjct: 116 FGSVLLGRQSDVLDDYGHQYTSVKDFGNFVG-SPHVGDRLEGSRTQNSIRYNSPSFSGVT 174 Query: 179 GNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTS----LIPAAG 234 + IYGFGE+AG S GQA+G G YDNGPLG + YYQSKAG +DT+ L P A Sbjct: 175 ASAIYGFGEEAGANSNGQAFGGGVAYDNGPLGAYLGYYQSKAGKNSADTAPLFQLNPVA- 233 Query: 235 ATNANTALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATATLGNAQKV 294 G+T K+ ++ ASYQ GPAR+Y N+SR+ + K Sbjct: 234 ----------EGDTMNKTFSLGASYQAGPARLYGNWSRI-------------NVPEQYKQ 270 Query: 295 DTYEIGTAYSLSPSLKLLAAVDHSRATFTG-VDG---KGKLTQISLGADYSLSKRTDLYA 350 + +E+GT Y+L+ L LLA+V H++ + G +G K ++TQ++LG DY LSKRTDLY Sbjct: 271 NIFELGTDYALTAPLHLLASVQHTQYSLDGNTEGNSSKPQVTQVNLGVDYYLSKRTDLYT 330 Query: 351 FVSNMRAT------DIQNPGVTGGATGSDASQTAVITGIRHKF 387 S + D P V A S+ Q AV GIRHKF Sbjct: 331 LASYAKGKNGAPVGDYSAPAVQNDAGKSN--QAAVAIGIRHKF 371 >ref|YP_003776283.1| outer membrane porin [Herbaspirillum seropedicae SmR1] gb|ADJ64375.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/378 (41%), Positives = 221/378 (58%), Gaps = 45/378 (11%) Query: 24 VTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSGVIQGSRIGFKGVEDLGGGLSAVF 83 VT+YG++D + Y+SKVG + GS+ ++SG SRIG +G E+LG GL+A+F Sbjct: 26 VTVYGVIDMSLVYTSKVGPDN-------GSRASLDSGDAMASRIGLRGREELGDGLAAIF 78 Query: 84 NLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGFGTVLLGRQTDFADTI-SAYTAVA 142 LETGF DDG + T LF RKSVVGL+G FGT+ +GRQTD+ + I YT+ Sbjct: 79 QLETGFAGDDGAM-----ATPGTLFDRKSVVGLAGRFGTLTVGRQTDYLEEIGQQYTSFQ 133 Query: 143 DFGG--VVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGNLIYGFGEQAGKTSAGQAYGI 200 FGG V A +SL+R+ G R+NNS+ + TA G G+ YG GE AG T +GQ+ G+ Sbjct: 134 IFGGGGVRAAHFNSLDRITGARSNNSLRFDTAEYGGLRGSFYYGAGEVAGSTRSGQSLGV 193 Query: 201 GGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANTALGVAGNTALKSLNVVASYQ 260 GG + G +G+G Y+QSK S +PA AG+T LK+ + ASYQ Sbjct: 194 GGNFRRGNVGVGAAYFQSKLASDA-----LPAR-----------AGDTELKTFTLGASYQ 237 Query: 261 FGPARVYANYSRVK----QDLKGTPTVATATLGNAQKVDTYEIGTAYSLSPSLKLLAAVD 316 GPA+++A +S+++ Q L + VA + +A + + ++G Y+L L LLA+V Sbjct: 238 AGPAKLFAAWSQIRRPTQQPLASSGLVA---ITSATRANVLDVGVDYALDSKLHLLASVI 294 Query: 317 HSRATFTGVDG---KGKLTQISLGADYSLSKRTDLYAFVSNMRATDIQNPGVTGGATGS- 372 H RA + G +G TQ++LG D LSKRTD+YA S +A D+ NPG+ A S Sbjct: 295 HDRADLSRAAGGATRGSTTQVNLGVDLLLSKRTDVYAMASRQQARDVLNPGIISAAYSSA 354 Query: 373 ---DASQTAVITGIRHKF 387 D+SQ + G+RHKF Sbjct: 355 PADDSSQNVLRVGLRHKF 372 >ref|ZP_03575533.1| outer membrane porin [Burkholderia multivorans CGD2M] ref|ZP_03581180.1| outer membrane porin [Burkholderia multivorans CGD2] gb|EEE04520.1| outer membrane porin [Burkholderia multivorans CGD2] gb|EEE10015.1| outer membrane porin [Burkholderia multivorans CGD2M] Length = 387 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 213/411 (51%), Gaps = 48/411 (11%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 MKKSLLAL LGAFAGAA AQSSVT+YGI+D G + N NA +G++SG Sbjct: 1 MKKSLLALVALGAFAGAAHAQSSVTLYGIIDEGFIF---------NNNAKGQHLYGLSSG 51 Query: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGL-QGSDAVTSSNLFRRKSVVGLSGG 119 V+QGSR G +G EDLGGGL A+F LE GF + G L QG +F R++ VGLS Sbjct: 52 VMQGSRFGLRGTEDLGGGLKAIFTLENGFDVNSGRLGQGGL------MFGRQAYVGLSSQ 105 Query: 120 FGTVLLGRQTD-FADTISAYTAVADFGGVVANSGSSLNRLQGT-RTNNSVSYTTANLSGF 177 +GTV LGRQ D D + A +GG +A L+ R NN+V YT+ GF Sbjct: 106 YGTVTLGRQYDSVVDFVGPLEAGDQWGGYIAAHPGDLDNFNNAYRVNNAVKYTSPTYGGF 165 Query: 178 TGNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATN 237 + +Y FG QAG+ S Q + +G Y+NGPL LG+ Y ++ TPS+ + G+ Sbjct: 166 SFGGLYSFGGQAGQFSKNQVWSLGAGYNNGPLVLGVGYLNAR---TPSNFGGMFNNGSAT 222 Query: 238 ANTAL------GVAGNTALKSLNVVASYQFGPARVYANYSRVK-QDLKGTP-TVATATLG 289 +N+ L A + + +Y FG A + A YS VK ++ P T TAT Sbjct: 223 SNSVLSSPIYGAYANANTYQVIGAGGAYTFGAATIGATYSNVKFKNFNFGPYTGQTATFN 282 Query: 290 NAQKVDTYEIGTAYSLSPSLKLLAAVDHSRATFTGVDGKGKLTQISLGADYSLSKRTDLY 349 N EI Y L+P+L L AA D+++ + + K Q SLG DY LSKRTD+Y Sbjct: 283 NG------EINFKYQLTPALILGAAYDYTQGSKIDGNSAAKYHQGSLGVDYFLSKRTDVY 336 Query: 350 AFVSNMRAT----DIQNP-----GVTGGATGSDAS----QTAVITGIRHKF 387 A+ D NP T G D S Q A GIRHKF Sbjct: 337 VIGVYQHASGKTLDPTNPTGTPINATASINGLDPSATSNQVAARVGIRHKF 387 >ref|YP_001118371.1| porin [Burkholderia vietnamiensis G4] gb|ABO53536.1| porin, Gram-negative type [Burkholderia vietnamiensis G4] Length = 389 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 165/416 (39%), Positives = 217/416 (52%), Gaps = 56/416 (13%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 MKKSLLAL LGAFAGAA AQSSVT+YGI+D G + N NA G +G+ SG Sbjct: 1 MKKSLLALVALGAFAGAAHAQSSVTLYGIIDEGFIF---------NNNAKGGHLYGLASG 51 Query: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGL-QGSDAVTSSNLFRRKSVVGLSGG 119 V+QGSR G +G EDLGGGL A+F LE GF + G L QG +F R++ VGLS Sbjct: 52 VMQGSRFGLRGTEDLGGGLKAIFVLENGFDVNSGKLGQGGL------MFGRQAYVGLSSQ 105 Query: 120 FGTVLLGRQTD-FADTISAYTAVADFGGVVANSGSSLNRLQGT-RTNNSVSYTTANLSGF 177 +GTV LGRQ D D + A +GG +A L+ R NN+V YT+AN GF Sbjct: 106 YGTVTLGRQYDSVVDFVGPLEAGDQWGGYIAAHPGDLDNFNNAYRVNNAVKYTSANYGGF 165 Query: 178 TGNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATN 237 T +Y FG QAG+ S Q + +G Y+NGPL LG+ Y ++ TP++ I G+++ Sbjct: 166 TFGGLYSFGGQAGQFSKNQVWSLGAGYNNGPLVLGVGYLNAR---TPANYGGIFNTGSSD 222 Query: 238 ---------ANTALGVAGNTA--LKSLNVVASYQFGPARVYANYS--RVKQDLKGTPTVA 284 ++ G N+A + + +Y FG A + A YS + K G T Sbjct: 223 PAASGKPVVSSPVYGTYANSANTYQVIGAGGAYTFGAATIGATYSNTKFKGFSAGQYTNQ 282 Query: 285 TATLGNAQKVDTYEIGTAYSLSPSLKLLAAVDHSRATFTGVDGKGKLTQISLGADYSLSK 344 TAT N E+ Y L+P+L L AA D+++ + + K Q SLG DY LSK Sbjct: 283 TATFNNG------ELNFKYQLTPALILGAAYDYTQGSKIDGNSAAKYHQGSLGVDYFLSK 336 Query: 345 RTDLYAF---------VSNMRATDIQNPGVTGGATGSDAS----QTAVITGIRHKF 387 RTD+Y V + + +Q T G DAS Q A GIRHKF Sbjct: 337 RTDVYVIGVYQHASGNVLDSKGNVVQ---ATAAINGLDASSTSNQVAARVGIRHKF 389 >ref|YP_772345.1| porin [Burkholderia ambifaria AMMD] gb|ABI86011.1| porin, Gram-negative type [Burkholderia ambifaria AMMD] Length = 385 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 165/411 (40%), Positives = 218/411 (53%), Gaps = 50/411 (12%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 MKKSLLAL LGAFAGAA AQSSVT+YGI+D G + N NA G +G++SG Sbjct: 1 MKKSLLALVALGAFAGAAHAQSSVTLYGIIDEGFIF---------NNNAKGGHLYGLSSG 51 Query: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGL-QGSDAVTSSNLFRRKSVVGLSGG 119 V+QGSR G +G EDLGGGL AVF LE GF + G L QG +F R++ VGLS Sbjct: 52 VMQGSRFGLRGTEDLGGGLKAVFVLENGFDVNSGRLGQGGL------MFGRQAYVGLSSQ 105 Query: 120 FGTVLLGRQTD-FADTISAYTAVADFGGVVANSGSSLNRLQGT-RTNNSVSYTTANLSGF 177 FGTV LGRQ D D + A +GG +A L+ R NN+V YT+ GF Sbjct: 106 FGTVTLGRQYDSVVDFVGPLEAGDQWGGYIAAHPGDLDNFNNAYRVNNAVKYTSPTYGGF 165 Query: 178 TGNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATN 237 + +Y FG QAG+ S Q + +G Y+NGPL LG+ Y ++ TP++ + GA+ Sbjct: 166 SFGGMYSFGGQAGQFSRNQVWSLGAGYNNGPLVLGVGYLNAR---TPANFGGMFNTGASA 222 Query: 238 ANTAL-----GVAGNTA--LKSLNVVASYQFGPARVYANYSRVKQDLKGT---PTV-ATA 286 A TA+ G N+A + + +Y FG A + A YS K KG P V TA Sbjct: 223 ATTAVSSPVYGAYANSANTYQVIGAGGAYTFGAATIGATYSNTK--FKGFSVGPFVNQTA 280 Query: 287 TLGNAQKVDTYEIGTAYSLSPSLKLLAAVDHSRATFTGVDGKGKLTQISLGADYSLSKRT 346 T N EI Y L+P+L + AA D+++ + + K Q SLG DY LSKRT Sbjct: 281 TFNNG------EINFKYQLTPALIVGAAYDYTQGSKIDGNSAAKYHQGSLGVDYFLSKRT 334 Query: 347 DLYAFVSNMRATD---------IQ-NPGVTGGATGSDASQTAVITGIRHKF 387 D+Y A+ +Q + + G + ++Q A GIRHKF Sbjct: 335 DVYVIGVYQHASGNALDAAGNVVQAHASINGLDPSTTSNQVAARVGIRHKF 385