BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0293.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777653.1| transmembrane disulfide bond formation B oxi...   124   3e-27
ref|ZP_08273721.1| Periplasmic thiol:disulfide oxidoreductase Ds...    78   6e-13
ref|YP_004754561.1| periplasmic thiol:disulfide oxidoreductase D...    69   3e-10

>ref|YP_003777653.1| transmembrane disulfide bond formation B oxidoreductase
          [Herbaspirillum seropedicae SmR1]
 gb|ADJ65745.1| transmembrane disulfide bond formation B oxidoreductase protein
          [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MKSSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAFALIGAFLPEA 60
          MKSSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAFALIGAFLPEA
Sbjct: 1  MKSSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAFALIGAFLPEA 60

Query: 61 ARR 63
          ARR
Sbjct: 61 ARR 63


>ref|ZP_08273721.1| Periplasmic thiol:disulfide oxidoreductase DsbB, required for
          DsbA reoxidation [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32799.1| Periplasmic thiol:disulfide oxidoreductase DsbB, required for
          DsbA reoxidation [Oxalobacteraceae bacterium IMCC9480]
          Length = 158

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 45/61 (73%)

Query: 1  MKSSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAFALIGAFLPEA 60
          MK+SKP+ L VAL   ALLG A+YLQ+VE MQPCPLC+IQRY F  VA   LI AFLP  
Sbjct: 1  MKNSKPILLCVALASFALLGVALYLQVVERMQPCPLCIIQRYAFAAVALICLIFAFLPRG 60

Query: 61 A 61
          A
Sbjct: 61 A 61


>ref|YP_004754561.1| periplasmic thiol:disulfide oxidoreductase DsbB, required for
          DsbA reoxidation [Collimonas fungivorans Ter331]
 gb|AEK63738.1| Periplasmic thiol:disulfide oxidoreductase DsbB, required for
          DsbA reoxidation [Collimonas fungivorans Ter331]
          Length = 162

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 45/63 (71%)

Query: 1  MKSSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAFALIGAFLPEA 60
          MK+SK V L VA + +A+LG A+YLQ  ++MQPCPLCVIQRY F  +A   LI A LP  
Sbjct: 1  MKTSKSVLLAVAFIALAILGGALYLQHYQDMQPCPLCVIQRYAFAAIALICLICAGLPAG 60

Query: 61 ARR 63
          A++
Sbjct: 61 AQK 63