BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0290.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777650.1| two component response regulator protein [He... 427 e-118 ref|YP_001098552.1| two-component system response regulator [Her... 146 2e-33 ref|YP_004754556.1| putative Two-component system response regul... 145 6e-33 ref|YP_001351907.1| two-components system response regulator [Ja... 144 1e-32 ref|ZP_08019718.1| DNA-binding response regulator [Lautropia mir... 137 1e-30 ref|ZP_08273716.1| DNA-binding response regulator [Oxalobacterac... 136 3e-30 ref|YP_001265217.1| two component transcriptional regulator [Sph... 132 6e-29 ref|YP_436118.1| response regulator [Hahella chejuensis KCTC 239... 131 9e-29 ref|YP_004661932.1| winged helix family two component transcript... 130 2e-28 ref|YP_162213.1| winged helix family two component transcription... 128 7e-28 >ref|YP_003777650.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65742.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 228/233 (97%), Positives = 229/233 (98%) Query: 7 MKIGLLSSDADTVSLVSQLGYPHDCTHCASLEELTSLSADGAQLLVLDLDDLLPQADELV 66 MKIGLLSSDADTVSLVSQLGYPHDCTHC SLEELTSLSADGAQLLVLDLDDLLPQADELV Sbjct: 1 MKIGLLSSDADTVSLVSQLGYPHDCTHCTSLEELTSLSADGAQLLVLDLDDLLPQADELV 60 Query: 67 ELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMR 126 ELVRRLRPPLAT PAP VLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMR Sbjct: 61 ELVRRLRPPLATGPAPAVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMR 120 Query: 127 TAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRA 186 TAEP EAQTRVIAAGGFLL+LARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRA Sbjct: 121 TAEPAEAQTRVIAAGGFLLDLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRA 180 Query: 187 FLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 239 FLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD Sbjct: 181 FLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 233 >ref|YP_001098552.1| two-component system response regulator [Herminiimonas arsenicoxydans] emb|CAL60423.1| Putative two component system, response regulator CheY-like [Herminiimonas arsenicoxydans] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 135/237 (56%), Gaps = 15/237 (6%) Query: 7 MKIGLLSSDADTVSLVSQL--GYPHDCTHCASLEEL-TSLSADGAQLLVLD--LDDLLPQ 61 M+I +L D LV Q+ H C S +EL L + +L++D + DL Sbjct: 1 MRIAVLDDDRSQTDLVCQVLSAAGHFCHPFQSGKELLNQLRRESFDMLIIDWQVPDL-SG 59 Query: 62 ADELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRM 121 AD L+ +L P L PV+ + + D + L AGA + ++KP+RR EL R+ Sbjct: 60 ADVLLWAREKLSPNL-----PVLFMTSRSGEDDIVAGL-AAGADDYMIKPIRRGELLARV 113 Query: 122 DLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGR 181 L+R A P + I G F+ R+T P +T+KE +LALLF +NLGR Sbjct: 114 QALLRRAYPSQNPIEQIQFGNFIFEARTGRLTMSGTP---IEVTQKEFDLALLFFRNLGR 170 Query: 182 PLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 PLSRA++ E VW + E+P+RT+DTHVSRVR+KL L+P HG+RLA VY YGY+LE++ Sbjct: 171 PLSRAYILEAVWARDVEIPSRTMDTHVSRVRSKLQLRPEHGFRLAPVYSYGYRLEQM 227 >ref|YP_004754556.1| putative Two-component system response regulator with CheY-like receiver domain [Collimonas fungivorans Ter331] gb|AEK63733.1| Putative Two-component system response regulator with CheY-like receiver domain [Collimonas fungivorans Ter331] Length = 229 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 11/235 (4%) Query: 7 MKIGLLSSDADTVSLVSQL--GYPHDCTHCASLEE-LTSLSADGAQLLVLDLDDLLPQAD 63 M+I +L D LV Q+ H C S +E L L + +LVLD Sbjct: 1 MRIAVLDDDPSQTDLVCQVLTSSGHICHPFQSGKEILNQLRRESYDMLVLDWQVPDLSGP 60 Query: 64 ELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDL 123 E++ VR P + PV+ + + D + L AGA + ++KP+RR EL R+ Sbjct: 61 EVLRWVRDKLP----KTIPVLFITSRSGEDDIVEGL-AAGADDYMIKPIRRSELVARVQA 115 Query: 124 LMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPL 183 L+R A P + + I +L R+T +P +T+KE +LALLF +NLGRPL Sbjct: 116 LLRRAYPIQNSSEQIVFNDYLFETRSGRLTLAGKP---IEITQKEFDLALLFFRNLGRPL 172 Query: 184 SRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 SRA++ E VW + ++P+RT+DTHVSRVR+KL L+P +GYRLA VY YGY+LE+L Sbjct: 173 SRAYILEAVWSRDVDIPSRTMDTHVSRVRSKLQLRPENGYRLAPVYSYGYRLEQL 227 >ref|YP_001351907.1| two-components system response regulator [Janthinobacterium sp. Marseille] gb|ABR89904.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 134/237 (56%), Gaps = 15/237 (6%) Query: 7 MKIGLLSSDADTVSLVSQL--GYPHDCTHCASLEEL-TSLSADGAQLLVLDLDDLLPQAD 63 M+I +L D LV Q+ H C S +EL L + +L++D Q Sbjct: 1 MRIAVLDDDRSQTDLVCQVLSAAGHFCHPFQSGKELLNQLRRESFDMLIIDW-----QVP 55 Query: 64 EL--VELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRM 121 +L +++R R L T PV+ + + D + L AGA + ++KP+RR EL R+ Sbjct: 56 DLSGADVLRWAREKLPTN-LPVLFMTSRSGEDDIVAGL-AAGADDYMIKPIRRGELLARV 113 Query: 122 DLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGR 181 L+R A P + I G F+ R+T P +T+KE +LALLF +NLGR Sbjct: 114 QALLRRAYPSQNPIEQIQFGNFIFEARTGRLTMSGAP---IEVTQKEFDLALLFFRNLGR 170 Query: 182 PLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 PLSRA++ E VW + E+P+RT+DTHVSRVR+KL L+P HG+RLA VY YGY+LE++ Sbjct: 171 PLSRAYILEAVWARDVEIPSRTMDTHVSRVRSKLQLRPEHGFRLAPVYSYGYRLEQM 227 >ref|ZP_08019718.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] gb|EFV93671.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] Length = 244 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 131/239 (54%), Gaps = 20/239 (8%) Query: 7 MKIGLLSSDADTVS-LVSQLGYPHDCTH----CASLEELTSLSADGAQLLVLDLDDLLPQ 61 M+I ++ D S LV L D H AS L +L + ++DL +LP Sbjct: 1 MRIAIIEDDKAVASQLVHSLSVEGDTCHLFNEAASF--LAALPRESFDACIVDL--MLPG 56 Query: 62 AD--ELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELAL 119 D LV L+R + PL PV++L + A + + AL AGA + +VKP R EL Sbjct: 57 MDGKALVRLLRERKNPL-----PVMVLTSQDAESEVISAL-DAGADDFVVKPARAGELRA 110 Query: 120 RMDLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNL 179 R+ L+R A + + F +L R R LT+KE +LALLFL N+ Sbjct: 111 RLKALVRRAGLGDIHGTIFEYDRFRFDLQRQTAQDSGRI---VELTQKEFQLALLFLNNI 167 Query: 180 GRPLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 G+PLSR ++E VWG + E+P+RT+DTHVSRVR+KL L+P GY LA VY YGY+LERL Sbjct: 168 GKPLSRGHIREAVWGRDSEVPSRTMDTHVSRVRSKLTLRPESGYLLAPVYSYGYRLERL 226 >ref|ZP_08273716.1| DNA-binding response regulator [Oxalobacteraceae bacterium IMCC9480] gb|EGF32794.1| DNA-binding response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 229 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 135/238 (56%), Gaps = 17/238 (7%) Query: 7 MKIGLLSSDADTVSLVSQL--GYPHDCTHCASLEE-LTSLSADGAQLLVLDLDDLLPQAD 63 M+I +L D LV Q+ G H C S +E L L + +L++D Q Sbjct: 1 MRIAVLDDDRTQTDLVCQVLSGAGHTCHAFQSGKEMLNQLRRESFDMLIIDW-----QVP 55 Query: 64 EL--VELVRRLRPPLATRPAPV-VLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALR 120 +L +++R R L PA + VL + + + +D + A AGA + ++KP+RR EL R Sbjct: 56 DLSGADVLRWAREKL---PAVLPVLFMTSRSGEDDIVAGLAAGADDYMIKPIRRGELVAR 112 Query: 121 MDLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLG 180 + L+R A P + I ++ R+ P LT+KE +LALL +NLG Sbjct: 113 VQALLRRAYPTQNTIEQIQFSHYIFEPRTGRLLDHGEP---VELTQKEFDLALLLFRNLG 169 Query: 181 RPLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 RPLSRA++ E VW + E+P+RT+DTHVSRVRTKL L+P +G+RLA VY YGY+LE++ Sbjct: 170 RPLSRAYILEAVWSRDVEIPSRTMDTHVSRVRTKLKLRPENGFRLAPVYSYGYRLEQV 227 >ref|YP_001265217.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gb|ABQ71079.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 271 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 135/241 (56%), Gaps = 11/241 (4%) Query: 2 PAPAAMKIGLLSSDADTVSLVSQ--LGYPHDCTHCASLEELTS-LSADGAQLLVLDLDDL 58 P+ +M+I +L +A ++ V+Q + H C + L S L D L++LD + Sbjct: 35 PSGDSMRIAVLDDEAAMLAFVTQTLIEAGHYCYDFPNARTLISRLRQDTFDLVILDWN-- 92 Query: 59 LPQADELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELA 118 +P VE+++ +R + +P P +LL + +D + L AGA + ++KP++ L Sbjct: 93 MPDKSG-VEIIQWMRENM-DKPVPSLLLTNRNSDEDIVAGL-DAGADDYVIKPVQPSVLL 149 Query: 119 LRMDLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQN 178 R++ + R P EA + G F L+ AR V +LT KE ELA +N Sbjct: 150 ARINAIHRRTGPREAIGANESYGPFTLHPARQMVAVDGE---NVTLTAKEFELAATLFRN 206 Query: 179 LGRPLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 + RPLSR++L E VWG P+LPTRT+D H+SR+R KLGL+P G+RL VY YGY+LE L Sbjct: 207 MHRPLSRSYLLEIVWGRNPDLPTRTLDAHISRIRAKLGLRPERGFRLIPVYSYGYRLEAL 266 Query: 239 D 239 + Sbjct: 267 E 267 >ref|YP_436118.1| response regulator [Hahella chejuensis KCTC 2396] gb|ABC31693.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 11/236 (4%) Query: 7 MKIGLLSSDADTVS--LVSQLGYPHDCTHCASLEE-LTSLSADGAQLLVLDLDDLLPQAD 63 MKIGLL D + L++ C H + ++ L +++ D LL++D LP D Sbjct: 1 MKIGLLEDDQNLADQLLLNLRNSDFQCRHYNTGKDFLFAVTHDSFDLLIMDWQ--LPDMD 58 Query: 64 ELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDL 123 ++++R++R P PV+ L A +D + AL +AGA + +VKP R EL R+ Sbjct: 59 G-IDILRKVRQQ-QEWPIPVLFLTQREAEEDIIEAL-EAGADDYMVKPARPGELIARLKA 115 Query: 124 LMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPL 183 L R EE+ + G F +N + + P +LT K+ +L +N GR L Sbjct: 116 LSRRNRTEESDAEEASYGPFSINHKKRTIQLNGEP---LTLTDKDFDLTTFLFENKGRLL 172 Query: 184 SRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 239 SR +L E+VWG ++ TRT+DTH+SR+R KLG++P +G+R+ T+Y +GY+LE ++ Sbjct: 173 SRKYLLERVWGVSSDINTRTVDTHMSRLRRKLGIKPENGFRIKTIYQHGYRLEEVE 228 >ref|YP_004661932.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. pomaceae ATCC 29192] gb|AEI37642.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. pomaceae ATCC 29192] Length = 239 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 136/237 (57%), Gaps = 15/237 (6%) Query: 7 MKIGLLSSDADT----VSLVSQLGYPHDC-THCASLEELTSLSADGAQLLVLDLDDLLPQ 61 M+I LL D +T +++++ GY DC + L L ++ LL+LD + Sbjct: 1 MRIALLDDDLETAAQLTAILTEAGY--DCRSFHKGYALLRMLRSETVDLLLLDWNVPDFS 58 Query: 62 ADELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRM 121 E++E V R P +P P++L A A +D + L AGA + LVKP++ + L R+ Sbjct: 59 GIEIIEWVNRHCDP---KP-PILLSTARTAAEDIVTGL-NAGADDYLVKPVQPEILLARV 113 Query: 122 DLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGR 181 ++R + P + + +L+R +V+ + +T KE L+LL +NL R Sbjct: 114 KAVLRRSYPVPPSDGIEHYDDYTFDLSREQVS---LGDTLIPMTSKEFMLSLLLFRNLHR 170 Query: 182 PLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 PLSR ++ E +WG P+LPTRT+DTH+S++RTKL L+P +GYRLA VY YGY+LERL Sbjct: 171 PLSRGYIFETLWGRNPDLPTRTLDTHISKIRTKLNLRPENGYRLAPVYAYGYRLERL 227 >ref|YP_162213.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] ref|YP_003225907.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gb|AAV89102.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gb|ACV75323.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gb|AEH62840.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 239 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 135/237 (56%), Gaps = 15/237 (6%) Query: 7 MKIGLLSSDADTVS----LVSQLGYPHDC-THCASLEELTSLSADGAQLLVLDLDDLLPQ 61 M+I LL D +T + ++++ GY DC + L L ++ LL+LD + Sbjct: 1 MRIALLDDDLETAAQLNAILTEAGY--DCRSFHKGYALLRMLRSETVDLLLLDWNVPDFS 58 Query: 62 ADELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRM 121 E++E V + P +P P++L A A +D + L AGA + LVKP++ + L R+ Sbjct: 59 GIEIIEWVNKHCDP---KP-PILLSTARTAAEDIVTGL-NAGADDYLVKPVQPEILLARV 113 Query: 122 DLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGR 181 ++R + P + + +++R +V+ +T KE L+LL +NL R Sbjct: 114 KAVLRRSYPTPPSDGIEHYDDYTFDVSREQVSLGN---TLIPMTSKEFTLSLLLFRNLHR 170 Query: 182 PLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERL 238 PLSR ++ E +WG P+LPTRT+DTH+S++RTKL L+P +GYRLA VY YGY+LERL Sbjct: 171 PLSRGYIFETLWGRNPDLPTRTLDTHISKIRTKLNLRPENGYRLAPVYAYGYRLERL 227