BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0263.p (123 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004695805.1| XRE family transcriptional regulator [Nitros... 194 3e-48 ref|ZP_05061519.1| hypothetical protein GP5015_1561 [gamma prote... 192 2e-47 ref|YP_003074664.1| helix-turn-helix domain-containing protein [... 191 2e-47 ref|ZP_01739386.1| hypothetical protein MELB17_14848 [Marinobact... 190 8e-47 ref|ZP_05129133.1| hypothetical protein NOR53_263 [gamma proteob... 188 2e-46 gb|EGR10533.1| transcriptional regulator, XRE family [Vibrio cho... 188 2e-46 gb|EGS63337.1| transcriptional regulator, XRE family [Vibrio cho... 188 2e-46 ref|ZP_06943580.1| helix-turn-helix domain-containing protein [V... 188 3e-46 ref|YP_004427367.1| Helix-turn-helix motif protein [Alteromonas ... 188 3e-46 ref|YP_004294477.1| transcriptional regulator, XRE family [Nitro... 185 2e-45 >ref|YP_004695805.1| XRE family transcriptional regulator [Nitrosomonas sp. Is79A3] gb|AEJ02406.1| transcriptional regulator, XRE family [Nitrosomonas sp. Is79A3] Length = 124 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 91/116 (78%), Positives = 102/116 (87%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+IKPIKTD DYRA L E++TLM A NTPEG++LDVLVTL++AYE KHFP+DLPDPVEA Sbjct: 1 MDIKPIKTDTDYRAALKEVETLMMAEPNTPEGEKLDVLVTLIEAYERKHFPLDLPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIK 116 IKF MEQ GLT +DLEP IG+SNRVYE+LNRKR LTL MIWKLHQ LGIPAESLIK Sbjct: 61 IKFEMEQKGLTVKDLEPMIGKSNRVYEVLNRKRSLTLKMIWKLHQELGIPAESLIK 116 >ref|ZP_05061519.1| hypothetical protein GP5015_1561 [gamma proteobacterium HTCC5015] gb|EDY86762.1| hypothetical protein GP5015_1561 [gamma proteobacterium HTCC5015] Length = 122 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/116 (77%), Positives = 104/116 (89%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+IKPIKTDADYRA L EI++LM A +TPEG++LDV+VTL++AYEAKHFP+DLPDPVEA Sbjct: 1 MDIKPIKTDADYRAALKEIESLMMAGPDTPEGEKLDVMVTLIEAYEAKHFPMDLPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIK 116 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLH+GLGIPAESLIK Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHEGLGIPAESLIK 116 >ref|YP_003074664.1| helix-turn-helix domain-containing protein [Teredinibacter turnerae T7901] gb|ACR14717.1| helix-turn-helix domain protein [Teredinibacter turnerae T7901] Length = 122 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 105/117 (89%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+IKPIKTD+DYRA L EI++LM A +TPEG++LDV+VTL++AYEAKHFP++LPDPVEA Sbjct: 1 MDIKPIKTDSDYRAALKEIESLMMAGPDTPEGEKLDVMVTLIEAYEAKHFPMELPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLH+GLGIPAESLIKP Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHEGLGIPAESLIKP 117 >ref|ZP_01739386.1| hypothetical protein MELB17_14848 [Marinobacter sp. ELB17] gb|EAZ97778.1| hypothetical protein MELB17_14848 [Marinobacter sp. ELB17] Length = 122 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 103/117 (88%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+IKPIKTDADYRA L EI++LM A +TPEG++LDV+VTL++AYEA+HFP+D DPVEA Sbjct: 1 MDIKPIKTDADYRAALKEIESLMIAGPDTPEGEKLDVMVTLIEAYEARHFPMDFSDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLHQGLGIPAESLIKP Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHQGLGIPAESLIKP 117 >ref|ZP_05129133.1| hypothetical protein NOR53_263 [gamma proteobacterium NOR5-3] gb|EED30948.1| hypothetical protein NOR53_263 [gamma proteobacterium NOR5-3] Length = 122 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 88/117 (75%), Positives = 104/117 (88%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+IKPIKTDADY+A L EI+TLM A ++ EG++LDV+VTL++AYEAKHFP++LPDPVEA Sbjct: 1 MDIKPIKTDADYQAALKEIETLMMAGPDSSEGEKLDVMVTLIEAYEAKHFPMELPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLH+GLGIPAESLIKP Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHEGLGIPAESLIKP 117 >gb|EGR10533.1| transcriptional regulator, XRE family [Vibrio cholerae HE48] Length = 123 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 103/117 (88%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+I+PIKTDADYRA L +I+ LM A +T EG++LD+LVTLV+AYEAKHFP+DLPDPVEA Sbjct: 1 MDIRPIKTDADYRAALNDIENLMMAEPDTVEGEKLDILVTLVEAYEAKHFPMDLPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLH+GLGIPAESLIKP Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHEGLGIPAESLIKP 117 >gb|EGS63337.1| transcriptional regulator, XRE family [Vibrio cholerae HE-09] Length = 123 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 103/117 (88%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+I+PIKTDADYRA L +I+ LM A +T EG++LD+LVTLV+AYEAKHFP+DLPDPVEA Sbjct: 1 MDIRPIKTDADYRAALNDIENLMMAEPDTVEGEKLDILVTLVEAYEAKHFPMDLPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLH+GLGIPAESLIKP Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHEGLGIPAESLIKP 117 >ref|ZP_06943580.1| helix-turn-helix domain-containing protein [Vibrio cholerae RC385] ref|YP_004469684.1| helix-turn-helix domain-containing protein [Alteromonas sp. SN2] gb|EFH72904.1| helix-turn-helix domain-containing protein [Vibrio cholerae RC385] gb|AEF05882.1| helix-turn-helix domain-containing protein [Alteromonas sp. SN2] Length = 123 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 103/117 (88%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+I+PIKTDADYRA L +I+ LM A +T EG++LD+LVTLV+AYEAKHFP+DLPDPVEA Sbjct: 1 MDIRPIKTDADYRAALNDIENLMMAEPDTIEGEKLDILVTLVEAYEAKHFPMDLPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLH+GLGIPAESLIKP Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHEGLGIPAESLIKP 117 >ref|YP_004427367.1| Helix-turn-helix motif protein [Alteromonas macleodii str. 'Deep ecotype'] ref|YP_004429183.1| Helix-turn-helix motif protein [Alteromonas macleodii str. 'Deep ecotype'] gb|AEA98369.1| Helix-turn-helix motif protein [Alteromonas macleodii str. 'Deep ecotype'] gb|AEB00186.1| Helix-turn-helix motif protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 123 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 103/117 (88%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M+I+PIKTDADYRA L +I+ LM A +T EG++LD+LVTLV+AYEAKHFP+DLPDPVEA Sbjct: 1 MDIRPIKTDADYRAALDDIENLMMAEPDTVEGEKLDILVTLVEAYEAKHFPMDLPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117 IKF ME+ GLT +DLEP IG+SNRVYEILN KR LTL MIWKLH+GLGIPAESLIKP Sbjct: 61 IKFEMERKGLTVKDLEPMIGKSNRVYEILNHKRSLTLKMIWKLHEGLGIPAESLIKP 117 >ref|YP_004294477.1| transcriptional regulator, XRE family [Nitrosomonas sp. AL212] gb|ADZ26315.1| transcriptional regulator, XRE family [Nitrosomonas sp. AL212] Length = 122 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/116 (76%), Positives = 101/116 (87%) Query: 1 MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60 M IKPIKTDADYRA L E+++LM+A NTPEG++LDVLVTL++AYE KHFP+DLPDPVEA Sbjct: 1 MIIKPIKTDADYRAALKEVESLMTAAPNTPEGEKLDVLVTLIEAYERKHFPLDLPDPVEA 60 Query: 61 IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIK 116 IKF MEQ GLT +DLEP IG+SNRVYE+LNRKR LTL MI KLHQ L IPAESLIK Sbjct: 61 IKFEMEQKGLTVKDLEPMIGKSNRVYEVLNRKRALTLRMIQKLHQELEIPAESLIK 116