BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0261.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777628.1| amino acid ABC transporter permease [Herbasp... 443 e-122 gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter x... 318 8e-85 ref|YP_004752056.1| amino acid ABC transporter permease [Collimo... 317 2e-84 gb|EGP46368.1| amino acid ABC transporter permease [Achromobacte... 315 5e-84 ref|ZP_06685208.1| glutamine ABC superfamily ATP binding cassett... 315 6e-84 ref|YP_001351725.1| ABC-type amino-acid transport system, permea... 309 2e-82 ref|YP_001416975.1| polar amino acid ABC transporter inner membr... 291 7e-77 ref|YP_472779.1| amino acid ABC transporter permease [Rhizobium ... 291 1e-76 ref|YP_933768.1| amino acid ABC transporter permease [Azoarcus s... 288 7e-76 ref|YP_002973433.1| polar amino acid ABC transporter inner membr... 287 1e-75 >ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65720.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 >gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter xylosoxidans C54] Length = 222 Score = 318 bits (814), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 148/214 (69%), Positives = 179/214 (83%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAYQFDF S FDYT V++KG+ T+ELIA G V GVA+GI AWARTQGP WL+ V+ Y Sbjct: 1 MAYQFDFASVFDYTPVLIKGIGVTVELIAFGAVAGVALGIACAWARTQGPRWLRAPVTAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE++RNTPFL+QLFF+FFGLPSL + SE+ AA +AM +NLGAYS EIIRAG+ A P+GQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFSEMQAACLAMALNLGAYSAEIIRAGIDATPKGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 EA SL+M+R+Q+FRH++L+PAL +IWPALSSQ+VIVMLGSAVCSQIA E+L+FAANFI Sbjct: 121 YEAGASLAMTRLQVFRHVVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGH 214 Q RNFRAFE Y V T IYLVLA+LLRQ+LR+ G Sbjct: 181 QSRNFRAFEVYFVTTGIYLVLAVLLRQLLRMTGR 214 >ref|YP_004752056.1| amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK61233.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Collimonas fungivorans Ter331] Length = 226 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/214 (77%), Positives = 192/214 (89%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 M+Y FDFL+ FDY V+VKGV TIELIAIGGVLGVAVGIFGAWARTQGP WL+P+VS Y Sbjct: 1 MSYHFDFLAPFDYPAVLVKGVLVTIELIAIGGVLGVAVGIFGAWARTQGPRWLRPLVSAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFFIFFGLP + + I E+ AA++AMVINLGAYS EIIRAG+ A+ RGQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPGIGVQIGEMQAALLAMVINLGAYSCEIIRAGIAAVARGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 +EA SL+M+RMQIFRH+IL PALQKIWPALSSQVVIVMLGSAVCSQIAVEEL++AANFI Sbjct: 121 VEAGLSLAMTRMQIFRHVILPPALQKIWPALSSQVVIVMLGSAVCSQIAVEELAYAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGH 214 QGRNFR+FE+Y+++TAIYL+LAI LRQ+LRL G Sbjct: 181 QGRNFRSFESYLLSTAIYLLLAIGLRQLLRLAGD 214 >gb|EGP46368.1| amino acid ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 222 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 149/214 (69%), Positives = 178/214 (83%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAYQFDF S FDYT V+VKG+ T+ELIA G V+GVA+GI AWARTQGP WL+ V+ Y Sbjct: 1 MAYQFDFASVFDYTPVLVKGIGVTVELIAFGAVVGVALGIGCAWARTQGPRWLRAPVTAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE++RNTPFL+QLFF+FFGLPSL + +E+ AA +AM +NLGAYS EIIRAG+ A PRGQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFNEMQAACLAMALNLGAYSAEIIRAGIDATPRGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 EA SL+M+R Q+FRHI+L+PAL +IWPALSSQ+VIVMLGSAVCSQIA E+L+FAANFI Sbjct: 121 YEAGASLAMTRWQVFRHIVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGH 214 Q RNFRAFE Y V T IYL LA+LLRQ+LR+ G Sbjct: 181 QSRNFRAFEVYFVTTGIYLALAVLLRQLLRMTGR 214 >ref|ZP_06685208.1| glutamine ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF77825.1| glutamine ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] Length = 222 Score = 315 bits (806), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 146/214 (68%), Positives = 180/214 (84%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAYQ+DF S DYT V++KG+ T+ELIA G V GVA+GI AW RTQGP WL+ V+ Y Sbjct: 1 MAYQYDFASVLDYTPVLIKGIGVTVELIAFGAVAGVALGIVCAWVRTQGPRWLRVPVTAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFF+FFGLPSL + + E+ AA +AM +NLGAYSTEIIRAG+ A P+GQ Sbjct: 61 VEVIRNTPFLIQLFFVFFGLPSLGVQLGEMQAACLAMALNLGAYSTEIIRAGIDATPKGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 EA SL+M+R+Q+FRH++L+PAL++IWPALSSQ+VIVMLGSAVCSQIA E+L+FAANFI Sbjct: 121 YEAGASLAMTRLQVFRHVVLKPALKRIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGH 214 Q RNFRAFE Y+V T IYLVLAI+LRQ+LR+ G Sbjct: 181 QSRNFRAFEVYLVTTGIYLVLAIVLRQLLRMAGR 214 >ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR91272.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 185/220 (84%), Positives = 206/220 (93%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAYQF+FLSTFDY+ V+VKGV TT+ELIA+GGVLGVAVGIFGAWARTQ P WL+PVVS Y Sbjct: 1 MAYQFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFFIFFGLPS+ + I+E+ AAI+AMVINLGAYSTEIIRAGV A+ RGQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 IEAA SLSM+R+QIFRHIILRPALQKIWPALSSQ+VIVMLGSAVCSQIAVEELSFAANFI Sbjct: 121 IEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITAR 220 QGRNFRAFEAY++ATAIYL+LAILLRQ+LRLIG FI AR Sbjct: 181 QGRNFRAFEAYLIATAIYLLLAILLRQILRLIGTRFIFAR 220 >ref|YP_001416975.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS67318.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 224 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 184/223 (82%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAY FDF S Y VI KGVA T+ELIA+GGVLGV +GI AWA+TQGP WL+P+V Y Sbjct: 1 MAYSFDFSSLGAYAPVIAKGVAVTLELIAVGGVLGVTLGIACAWAKTQGPRWLRPLVEAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFFIFFGLP++ + ++E+ AAI+AMVINLGAY+ EIIRAG++A P+GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPAIGVGLTEMQAAILAMVINLGAYACEIIRAGIEATPKGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 EA SL+MSR+Q FRH++L PALQKIWPALSSQ+VIVM GSAVCSQI+VEEL+FAANFI Sbjct: 121 FEAGASLAMSRVQTFRHVVLVPALQKIWPALSSQIVIVMFGSAVCSQISVEELTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 Q R FRAFEAYIVAT +YL LA+L+RQV+R IG R A Sbjct: 181 QSRTFRAFEAYIVATVLYLALAVLVRQVMRGIGALVFPRRSVA 223 >ref|YP_472779.1| amino acid ABC transporter permease [Rhizobium etli CFN 42] gb|ABC94052.1| probable amino acid ABC transporter, permease protein [Rhizobium etli CFN 42] Length = 223 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 155/221 (70%), Positives = 186/221 (84%), Gaps = 1/221 (0%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 M+Y F+F Y I+KGV T+ELIAIGGVLG+++GIF AW R GP WLKP+V+ Y Sbjct: 1 MSYHFEFSWLLQYYPEIIKGVLITLELIAIGGVLGISLGIFCAWVRALGPAWLKPIVAAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFFIFFGLPSL +H+SE+TAA +AMV+NLGAYS EIIRAG+QA P+GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSLGLHLSELTAANLAMVVNLGAYSCEIIRAGIQATPKGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 EA +SL+M+R + FRH++L P+LQ+IWPALSSQVVIVMLGSAV SQIA E+L+FAANFI Sbjct: 121 FEAGESLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSAVVSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARR 221 Q R FRAFEAYIV+T+IYL LAILLRQVL LIG +FI RR Sbjct: 181 QSRTFRAFEAYIVSTSIYLALAILLRQVLGLIG-WFIFPRR 220 >ref|YP_933768.1| amino acid ABC transporter permease [Azoarcus sp. BH72] emb|CAL94881.1| amino acid ABC transporter, permease protein [Azoarcus sp. BH72] Length = 222 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 140/220 (63%), Positives = 171/220 (77%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAYQFDF FD D+++ G T+ L A+G V G+ +GI GA R + Y Sbjct: 1 MAYQFDFAPVFDNADLLLSGAGFTLALTAVGAVFGIGLGILGAICRAWKLAPFDRIFGVY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFLVQLFFIFFGLPSL + ++E AA++AMVINLGAYSTEIIRAG+QA PRGQ Sbjct: 61 VEVIRNTPFLVQLFFIFFGLPSLGVKMTEWQAAVLAMVINLGAYSTEIIRAGIQATPRGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 IEAA+SL+++R QIFRH++LRPAL K+WPAL+SQV+IVMLGSAVCSQIA EEL+FAANFI Sbjct: 121 IEAAESLALTRSQIFRHVVLRPALAKVWPALTSQVIIVMLGSAVCSQIATEELTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITAR 220 Q RNFRAFE Y V TAIY +A+L+RQ+L IG ++ R Sbjct: 181 QSRNFRAFETYFVTTAIYFAMALLIRQLLIQIGQRYVVGR 220 >ref|YP_002973433.1| polar amino acid ABC transporter inner membrane subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS59472.1| polar amino acid ABC transporter, inner membrane subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 223 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 187/223 (83%), Gaps = 1/223 (0%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 M+Y F+F +Y I+KG+ T+ELIAIGGVLG+++GIF AWAR GP WLKPVV+ Y Sbjct: 1 MSYHFEFGWLLEYYPEIIKGILITLELIAIGGVLGISLGIFCAWARALGPAWLKPVVATY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFFIFFGLPSL +SE+TAA +AMV+NLGAYS EIIRAG+QA P+GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSLGFKLSELTAANLAMVVNLGAYSCEIIRAGIQATPKGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 EA +SL+M+R + FRH++L P+LQ+IWPALSSQVVIVMLGS+V SQIA E+L+FAANFI Sbjct: 121 FEAGESLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 Q R FRAFEAYIV+TAIYLVLAILLRQ+L ++G FI RR A Sbjct: 181 QSRTFRAFEAYIVSTAIYLVLAILLRQLLAVVGG-FIFPRRAA 222