BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0260.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777627.1| amino acid ABC transporter/signal transducti... 515 e-144 ref|YP_001351726.1| ABC transporter substrate binding protein [J... 426 e-117 gb|EGP46369.1| amino acid ABC transporter substrate-binding prot... 392 e-107 ref|ZP_06685209.1| amino acid ABC superfamily ATP binding casset... 392 e-107 gb|EFV82367.1| extracellular solute-binding protein family 3 [Ac... 392 e-107 ref|YP_004752057.1| twin-arginine translocation pathway signal [... 390 e-107 ref|YP_002279458.1| family 3 extracellular solute-binding protei... 374 e-102 ref|YP_002549088.1| ABC transporter substrate binding protein (a... 373 e-101 ref|YP_472780.1| amino acid ABC transporter substrate-binding pr... 369 e-100 ref|YP_001416974.1| extracellular solute-binding protein [Xantho... 367 e-100 >ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65719.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 259/260 (99%), Positives = 259/260 (99%) Query: 1 MKLTKLLLGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 MKLTKLLLGLMAGAMMFSASVA ADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD Sbjct: 1 MKLTKLLLGLMAGAMMFSASVARADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 Query: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF Sbjct: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 Query: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS Sbjct: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 Query: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK Sbjct: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 Query: 241 DGSLSAISQKWLGMPLPAGL 260 DGSLSAISQKWLGMPLPAGL Sbjct: 241 DGSLSAISQKWLGMPLPAGL 260 >ref|YP_001351726.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] gb|ABR90168.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] Length = 259 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 209/260 (80%), Positives = 235/260 (90%), Gaps = 1/260 (0%) Query: 1 MKLTKLLLGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 MKL+ +L+GLMAGA++ + +VA ADALDDIQK G LRVAVP DFPPFGSV D+ PQGLD Sbjct: 1 MKLSTILIGLMAGALLLT-NVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLD 59 Query: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 IDVATLIAKKLGVKVELIPV+SANRIPYL TKKVDLVISSMGKN EREKVIDFSAAYAPF Sbjct: 60 IDVATLIAKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPF 119 Query: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 FNGVFGPAD V + ADLAGKTI VTRGSVEDLEL+KI P SAT+KRYEDNN TISSFLS Sbjct: 120 FNGVFGPADQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLS 179 Query: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 QVQLVATGNV+AAAIIA+NPPKKPETKFLIK+SPC IGLNKGE+KL +KV+AI+A++KK Sbjct: 180 NQVQLVATGNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKK 239 Query: 241 DGSLSAISQKWLGMPLPAGL 260 DGSL+ +++KWLG+PLPA L Sbjct: 240 DGSLNTLTEKWLGLPLPASL 259 >gb|EGP46369.1| amino acid ABC transporter substrate-binding protein [Achromobacter xylosoxidans AXX-A] Length = 260 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/260 (73%), Positives = 220/260 (84%) Query: 1 MKLTKLLLGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 M LLL L A + +A + HAD LDDI K GTL+VAVP DFPPFGSV +D+KP G D Sbjct: 1 MNRRTLLLSLCTAATLLAAPLTHADTLDDIVKAGTLKVAVPQDFPPFGSVGSDMKPLGYD 60 Query: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 ID A LIAK+LGVK+EL+PV+SANR+PYL T+KVDLVISS+GKNAEREK IDFS AYAPF Sbjct: 61 IDTAALIAKQLGVKLELVPVTSANRVPYLQTRKVDLVISSLGKNAEREKAIDFSDAYAPF 120 Query: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 FNGVFGPADL V SAADLAGKTI VTRG+VED+ELTKI P +AT+KRYEDNN TI++FLS Sbjct: 121 FNGVFGPADLKVASAADLAGKTIGVTRGAVEDIELTKIAPPTATLKRYEDNNGTITAFLS 180 Query: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 GQV L+ATGNVVAAAI+ARNPPKKPETKFLIKDSPC+IG+NK E KL+ KV+ ILA +K+ Sbjct: 181 GQVPLIATGNVVAAAILARNPPKKPETKFLIKDSPCYIGMNKDEPKLRAKVNEILANAKR 240 Query: 241 DGSLSAISQKWLGMPLPAGL 260 DGSL+AIS+KWLG LP L Sbjct: 241 DGSLAAISKKWLGADLPKDL 260 >ref|ZP_06685209.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF77826.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 260 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/260 (73%), Positives = 220/260 (84%) Query: 1 MKLTKLLLGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 M LLL L A + +A + HAD LDDI K G +++AVP DFPPFGSV +D+KP G D Sbjct: 1 MNRRTLLLSLCTAASLLAAPLTHADTLDDIVKAGVIKIAVPQDFPPFGSVGSDMKPLGYD 60 Query: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 ID A LIAK+LGVK+EL+PV+SANR+PYL T+KVDLVISS+GKNAEREK IDFS AYAPF Sbjct: 61 IDTAALIAKQLGVKLELVPVTSANRVPYLQTRKVDLVISSLGKNAEREKAIDFSDAYAPF 120 Query: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 FNGVFGPADL V SAADLAGKTI VTRG+VED+EL+KI PASAT+KRYEDNN TI++FLS Sbjct: 121 FNGVFGPADLKVSSAADLAGKTIGVTRGAVEDIELSKIAPASATLKRYEDNNGTITAFLS 180 Query: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 GQV ++ATGNVVAAAI+ARNPPKKPETKFLIK+SPC+IG+NK E KL+ KV+ ILA +K Sbjct: 181 GQVPMIATGNVVAAAILARNPPKKPETKFLIKNSPCYIGMNKDEPKLRAKVNDILAAAKH 240 Query: 241 DGSLSAISQKWLGMPLPAGL 260 DGSLSAISQKWLG PLP L Sbjct: 241 DGSLSAISQKWLGAPLPKDL 260 >gb|EFV82367.1| extracellular solute-binding protein family 3 [Achromobacter xylosoxidans C54] Length = 260 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/260 (73%), Positives = 219/260 (84%) Query: 1 MKLTKLLLGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 M LLL L A + +A + HAD LDDI K GTL+VAVP DFPPFGSV AD+KP G D Sbjct: 1 MNRRTLLLSLCTAATLLAAPLTHADTLDDIVKRGTLKVAVPQDFPPFGSVGADMKPLGYD 60 Query: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 ID A LIAK+LGVK+EL+PV+SANR+PYL T+KVDLVISS+GKN EREK IDFS AYAPF Sbjct: 61 IDTAALIAKQLGVKLELVPVTSANRVPYLQTRKVDLVISSLGKNPEREKAIDFSDAYAPF 120 Query: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 FNGVFGPAD+ V SAADLAGKTI VTRG+VED+ELTKI P +AT+KRYEDNN TI++FLS Sbjct: 121 FNGVFGPADVKVASAADLAGKTIGVTRGAVEDIELTKIAPPTATLKRYEDNNGTITAFLS 180 Query: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 GQV L+ATGNVVAAAI+ARNPPKKPETKFLIKDSPC+IGLNK E KL+ KV+ ILA +K+ Sbjct: 181 GQVPLIATGNVVAAAILARNPPKKPETKFLIKDSPCYIGLNKDEPKLRAKVNEILANAKR 240 Query: 241 DGSLSAISQKWLGMPLPAGL 260 DGSL+AIS+KWLG LP L Sbjct: 241 DGSLTAISRKWLGADLPKDL 260 >ref|YP_004752057.1| twin-arginine translocation pathway signal [Collimonas fungivorans Ter331] gb|AEK61234.1| Twin-arginine translocation pathway signal [Collimonas fungivorans Ter331] Length = 259 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/242 (79%), Positives = 217/242 (89%) Query: 19 ASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVATLIAKKLGVKVELI 78 +S A ADAL+DI K G L+VAVP DFPPFGSV +DLKPQGLDIDVATLIAKK+GVK+ELI Sbjct: 18 SSTARADALEDIVKSGVLKVAVPQDFPPFGSVTSDLKPQGLDIDVATLIAKKMGVKIELI 77 Query: 79 PVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVFGPADLSVKSAADL 138 PV+SANR+PYL TKKVDL+ISS+GKN EREKVI FS AYAPF+NGVFG AD V SAADL Sbjct: 78 PVTSANRVPYLQTKKVDLIISSLGKNPEREKVIAFSDAYAPFYNGVFGGADQKVSSAADL 137 Query: 139 AGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVATGNVVAAAIIA 198 AGKT+ VTRG+VEDLELTKI PASAT+KRYEDNN TIS+FLSGQVQLVATGNVVAAAIIA Sbjct: 138 AGKTVGVTRGAVEDLELTKIAPASATIKRYEDNNGTISAFLSGQVQLVATGNVVAAAIIA 197 Query: 199 RNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSAISQKWLGMPLPA 258 +NPPKKPETKFLIK+SPC IGL+K E KL +KV+AILA++KKDG L+A+S KWLG+PLPA Sbjct: 198 KNPPKKPETKFLIKNSPCSIGLSKDEPKLLEKVNAILAQTKKDGELNALSVKWLGLPLPA 257 Query: 259 GL 260 L Sbjct: 258 NL 259 >ref|YP_002279458.1| family 3 extracellular solute-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI58718.1| extracellular solute-binding protein family 3 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 261 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/242 (74%), Positives = 207/242 (85%) Query: 19 ASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVATLIAKKLGVKVELI 78 +S +HADAL DI GTLRVAVP DFPPFGSV D+ P G DIDVA LIA+KLGVK EL+ Sbjct: 20 SSTSHADALADITARGTLRVAVPQDFPPFGSVGTDMAPMGYDIDVANLIAEKLGVKTELV 79 Query: 79 PVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVFGPADLSVKSAADL 138 PV+SANR+PYL T KVDLVISS+GKNAEREKVIDFSAAYAPFFNGVF PADLS+ A DL Sbjct: 80 PVTSANRVPYLQTNKVDLVISSLGKNAEREKVIDFSAAYAPFFNGVFAPADLSIAKAEDL 139 Query: 139 AGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVATGNVVAAAIIA 198 AGK+IAVTRG+VEDLELTKI PA AT+KRYEDNN TIS+FLSGQV VATGNVVAAAI+A Sbjct: 140 AGKSIAVTRGAVEDLELTKIAPADATIKRYEDNNGTISAFLSGQVDTVATGNVVAAAILA 199 Query: 199 RNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSAISQKWLGMPLPA 258 +NPPK+PE KFLIK+SPC+IGLNK + L +KV+ I+A +K DG+L++ISQKWLG LP+ Sbjct: 200 KNPPKRPELKFLIKNSPCYIGLNKEQAALLEKVNGIIAAAKTDGALNSISQKWLGTDLPS 259 Query: 259 GL 260 L Sbjct: 260 DL 261 >ref|YP_002549088.1| ABC transporter substrate binding protein (amino acid) [Agrobacterium vitis S4] gb|ACM36082.1| ABC transporter substrate binding protein (amino acid) [Agrobacterium vitis S4] Length = 260 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/257 (70%), Positives = 214/257 (83%), Gaps = 1/257 (0%) Query: 5 KLLLGLMAGAMMFSASV-AHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDV 63 + LL L F+A + AHADAL DI K GTL+VAVP DFPPFGSV D++P G DID Sbjct: 4 RTLLALGLSLATFAAVLPAHADALGDITKRGTLKVAVPQDFPPFGSVGTDMQPVGYDIDT 63 Query: 64 ATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNG 123 A LIAKKLGVK+EL+PV+SANRIPYL T KVDLVISS+GKN +REKV+DFS AYAPF+NG Sbjct: 64 AALIAKKLGVKLELVPVTSANRIPYLQTNKVDLVISSLGKNPDREKVVDFSTAYAPFYNG 123 Query: 124 VFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQV 183 VF PAD ++KSAADL+GK++ VTRG+VEDLELTK+ P+ A +KRYEDNN TIS+FLSGQV Sbjct: 124 VFAPADTAIKSAADLSGKSVGVTRGAVEDLELTKVAPSDAVIKRYEDNNGTISAFLSGQV 183 Query: 184 QLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGS 243 VATGNVVAAAI+A+NPPK+PE KFLIK+SPCFIG NK E L +K++AI+AE+K DGS Sbjct: 184 DAVATGNVVAAAILAKNPPKRPEPKFLIKNSPCFIGFNKNEPALAEKINAIIAEAKADGS 243 Query: 244 LSAISQKWLGMPLPAGL 260 LS IS+KWLG PLPA L Sbjct: 244 LSKISEKWLGAPLPADL 260 >ref|YP_472780.1| amino acid ABC transporter substrate-binding protein [Rhizobium etli CFN 42] gb|ABC94053.1| probable amino acid ABC transporter, substrate-binding protein [Rhizobium etli CFN 42] Length = 261 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/253 (71%), Positives = 210/253 (83%), Gaps = 1/253 (0%) Query: 8 LGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVATLI 67 + +A F+A +HADAL DI GTLRVAVP DFPPFGSV D+ P G DID+A LI Sbjct: 10 IATLAATFGFNAP-SHADALADITARGTLRVAVPQDFPPFGSVGTDMAPMGYDIDMANLI 68 Query: 68 AKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVFGP 127 A+KLGVK EL+PV+SANR+PYL T KVDLVISS+GKN EREKVIDFS AYAPFFNGVFGP Sbjct: 69 AEKLGVKAELVPVTSANRVPYLQTNKVDLVISSLGKNPEREKVIDFSVAYAPFFNGVFGP 128 Query: 128 ADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVA 187 ADLSV A DLAGK+I VTRG+VEDLELTKI PA AT+KRYEDNN TIS+FLSGQV ++A Sbjct: 129 ADLSVAKAEDLAGKSIGVTRGAVEDLELTKIAPADATIKRYEDNNGTISAFLSGQVDIIA 188 Query: 188 TGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSAI 247 TGNVVAAAI+A+NPPK+PE KFLIK+SPC+IGLNK + L +KV+ I+A +K DG+L+AI Sbjct: 189 TGNVVAAAILAKNPPKRPELKFLIKNSPCYIGLNKEQSALLEKVNGIVAAAKADGTLNAI 248 Query: 248 SQKWLGMPLPAGL 260 SQKWLG LP+ L Sbjct: 249 SQKWLGADLPSDL 261 >ref|YP_001416974.1| extracellular solute-binding protein [Xanthobacter autotrophicus Py2] gb|ABS67317.1| extracellular solute-binding protein family 3 [Xanthobacter autotrophicus Py2] Length = 269 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/242 (72%), Positives = 204/242 (84%) Query: 19 ASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVATLIAKKLGVKVELI 78 ++ A AD LDDI K G +R+AVP DFPPFGSV DLKP G DIDVA LIA KLGVK EL+ Sbjct: 28 STAARADTLDDIMKAGVIRIAVPQDFPPFGSVGVDLKPLGYDIDVANLIAAKLGVKAELV 87 Query: 79 PVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVFGPADLSVKSAADL 138 PV+SANRIPYL TKKVDLVISS+GKN EREKV+DFS AYAPFFNG+FGPAD+ V+ D+ Sbjct: 88 PVTSANRIPYLQTKKVDLVISSLGKNPEREKVMDFSVAYAPFFNGIFGPADVKVEKVEDI 147 Query: 139 AGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVATGNVVAAAIIA 198 AG T+ VTRGSVEDLELTK+ P +A +KRYEDNNSTIS+FLSGQV++VATGNVVAAAI+A Sbjct: 148 AGMTVGVTRGSVEDLELTKVAPPTADIKRYEDNNSTISAFLSGQVKVVATGNVVAAAILA 207 Query: 199 RNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSAISQKWLGMPLPA 258 RNPPKKP+ K LIK+SPC++GLNK E KL +KV+AI+ +K DGSL ISQKWLG PLPA Sbjct: 208 RNPPKKPQVKVLIKNSPCYVGLNKDEPKLLEKVNAIITAAKADGSLEKISQKWLGAPLPA 267 Query: 259 GL 260 L Sbjct: 268 DL 269