BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0247.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777612.1| transcription regulator protein [Herbaspiril... 459 e-127 ref|YP_583982.1| GntR family transcriptional regulator [Cupriavi... 353 2e-95 ref|YP_295642.1| GntR family transcriptional regulator [Ralstoni... 352 2e-95 ref|YP_004685408.1| GntR family transcriptional regulator [Cupri... 346 1e-93 ref|YP_726063.1| GntR family transcriptional regulator [Ralstoni... 344 5e-93 ref|YP_002005505.1| GntR family transcriptional regulator [Cupri... 344 6e-93 ref|ZP_06844142.1| GntR domain protein [Burkholderia sp. Ch1-1] ... 317 7e-85 ref|ZP_03270389.1| GntR domain protein [Burkholderia sp. H160] >... 317 1e-84 ref|YP_003909379.1| GntR domain-containing protein [Burkholderia... 316 2e-84 ref|YP_001889638.1| GntR domain-containing protein [Burkholderia... 316 2e-84 >ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65704.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE Sbjct: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE Sbjct: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT Sbjct: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ Sbjct: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 >ref|YP_583982.1| GntR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF08713.1| transcriptional regulator, GntR-family [Cupriavidus metallidurans CH34] Length = 247 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 177/230 (76%), Positives = 204/230 (88%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MFQKIPA+AL+D+VA QLLE I+ G FPRG+KLPTEAVL+++FGVSRTV+REAIARLK+E Sbjct: 1 MFQKIPARALTDSVAEQLLEKIEDGMFPRGAKLPTEAVLSEEFGVSRTVIREAIARLKYE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 G+VE RQGSGVFVTEQAGI+PLRIDYT+V + E+VLQIVELRR+IEAEVAAQAA+RR+ Sbjct: 61 GLVESRQGSGVFVTEQAGIRPLRIDYTDVGTLESVLQIVELRRSIEAEVAAQAARRRTDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 + I+AALA+I +VAAGGDGV ADV FHRA+A+AT NPYF+KTL FLSQYLE AT VT Sbjct: 121 TMANIDAALARIDAEVAAGGDGVDADVGFHRAIAEATGNPYFLKTLAFLSQYLETATRVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEAR EDFSRQVREEH+AIV AIRAGD AARNAAQ HM+NAARRLSQ Sbjct: 181 RTNEARREDFSRQVREEHQAIVAAIRAGDPDAARNAAQNHMYNAARRLSQ 230 >ref|YP_295642.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ60798.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 245 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 174/230 (75%), Positives = 203/230 (88%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MFQK+PA+AL+D VA QLL+ I +GAF RG KLPTEAVL+++FGVSRTV+REAI+RLK+E Sbjct: 1 MFQKVPARALTDNVAEQLLDKIQSGAFARGDKLPTEAVLSEEFGVSRTVIREAISRLKYE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVE RQGSGVFVTEQAGI+PLRIDYT+ + ++VLQIVELRRAIEAEVAAQAA+RR+ Sbjct: 61 GVVESRQGSGVFVTEQAGIRPLRIDYTDTGTLDSVLQIVELRRAIEAEVAAQAARRRTDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 + AI+ ALA++ +VA GGDGVAADVAFHRA+A AT NPYF+KTLEFLSQYLEAAT VT Sbjct: 121 TMTAIDTALARLDAEVAEGGDGVAADVAFHRAIATATGNPYFLKTLEFLSQYLEAATRVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEAR DF+RQVREEH+AIV AIRAGD +AARNAAQ HM+NAARRLSQ Sbjct: 181 RTNEARRADFTRQVREEHQAIVAAIRAGDALAARNAAQNHMYNAARRLSQ 230 >ref|YP_004685408.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI76927.1| transcriptional regulator GntR family [Cupriavidus necator N-1] Length = 244 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 174/230 (75%), Positives = 202/230 (87%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MFQK+PA+AL+D VA QLL+ I +GAF RG+KLPTEAVL+++FGVSRTVVREAI+RLK+E Sbjct: 1 MFQKVPARALTDNVAEQLLDKIQSGAFARGAKLPTEAVLSEEFGVSRTVVREAISRLKYE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVE RQGSGVFVT QAGI+PLRIDYTE + E+VLQIVELRRAIEAEVAAQAA+RR+ Sbjct: 61 GVVESRQGSGVFVTLQAGIRPLRIDYTETGTLESVLQIVELRRAIEAEVAAQAARRRTDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 + AI+AALA++ +VA GGDGVA DVAFHRA+A+AT NPYF+KTL FLSQYLEAAT VT Sbjct: 121 SMAAIDAALARLDEEVAQGGDGVAEDVAFHRAIAEATGNPYFLKTLAFLSQYLEAATRVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEAR DFSRQVREEH+AIV AIRAGD +AARNAAQ HM+NAA RL+Q Sbjct: 181 RTNEARRADFSRQVREEHQAIVAAIRAGDPLAARNAAQNHMYNAAHRLAQ 230 >ref|YP_726063.1| GntR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ92695.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 244 Score = 344 bits (883), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 174/230 (75%), Positives = 200/230 (86%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MFQK+PA+AL+D VA QLL+ I +GAF RG KLPTEAVL+ +FGVSRTVVREAI+RLK+E Sbjct: 1 MFQKVPARALTDNVAEQLLDKIQSGAFARGDKLPTEAVLSGEFGVSRTVVREAISRLKYE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVE RQGSGVFVT QAGI+PLRIDYTE + E+VLQIVELRRAIEAEVAAQAA+RR+ Sbjct: 61 GVVESRQGSGVFVTLQAGIRPLRIDYTETGTLESVLQIVELRRAIEAEVAAQAARRRTDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 + AI+AALA++ +VA GGDGVA DVAFHRA+A+AT NPYF+KTL FLSQYLEAAT VT Sbjct: 121 SMAAIDAALARLDEEVAQGGDGVAEDVAFHRAIAEATGNPYFLKTLAFLSQYLEAATRVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEAR DFSRQVREEH+AIV AIRAGD +AARNAAQ HM+NAA RL+Q Sbjct: 181 RTNEARRADFSRQVREEHQAIVAAIRAGDPLAARNAAQNHMYNAAHRLAQ 230 >ref|YP_002005505.1| GntR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ69438.1| putative transcriptional regulator, GntR family [Cupriavidus taiwanensis LMG 19424] Length = 244 Score = 344 bits (882), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 174/230 (75%), Positives = 200/230 (86%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MFQK+PA+AL+D VA QLL+ I +GAF RG KLPTEAVL+++FGVSRTVVREAI+RLK+E Sbjct: 1 MFQKVPARALTDNVAEQLLDKIQSGAFARGDKLPTEAVLSEEFGVSRTVVREAISRLKYE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVE RQGSGVFVT QAGI+PLRIDYT+ + E+VLQIVELRRAIEAEVAAQAA+RRS Sbjct: 61 GVVESRQGSGVFVTLQAGIRPLRIDYTDTGALESVLQIVELRRAIEAEVAAQAARRRSDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 + AI+AALA++ VA GGDGVA DV FHRA+A+AT NPYF+KTLEFLSQYLEAAT VT Sbjct: 121 SMAAIDAALARLDDVVAQGGDGVAEDVGFHRAIAEATGNPYFLKTLEFLSQYLEAATRVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEAR DFSRQVREEH+AIV AIRAGD +AARNAAQ HM+NAA RL+Q Sbjct: 181 RTNEARRADFSRQVREEHQAIVAAIRAGDPLAARNAAQNHMYNAAHRLAQ 230 >ref|ZP_06844142.1| GntR domain protein [Burkholderia sp. Ch1-1] gb|EFG68302.1| GntR domain protein [Burkholderia sp. Ch1-1] Length = 234 Score = 317 bits (813), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 167/230 (72%), Positives = 191/230 (83%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MF KIPA+ALSDTVA+QLL+ ID G F RG KLPTEAVLAQQFGVSRTV+REAI+RLK+E Sbjct: 1 MFDKIPARALSDTVAQQLLKQIDKGTFKRGGKLPTEAVLAQQFGVSRTVIREAISRLKNE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVEPRQGSGVF+ I+PLRIDY E P +V+QI+ LRRAIEAEVA++AA RRS Sbjct: 61 GVVEPRQGSGVFIAAHGAIRPLRIDYAEAVEPGSVVQILALRRAIEAEVASEAAMRRSDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 D+ +I+AALA+I VA G DGVA DVAFHRA+A AT NPYF+KTL FL+QYLEA T VT Sbjct: 121 DMVSIDAALAKIDEAVAEGEDGVAEDVAFHRAIAAATGNPYFLKTLTFLNQYLEAGTVVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEA EDFSRQVREEH AI AIRAGD MAARNAA+THM+NAARRL++ Sbjct: 181 RHNEALREDFSRQVREEHAAIAAAIRAGDPMAARNAARTHMYNAARRLAE 230 >ref|ZP_03270389.1| GntR domain protein [Burkholderia sp. H160] gb|EDZ98030.1| GntR domain protein [Burkholderia sp. H160] Length = 234 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 164/230 (71%), Positives = 192/230 (83%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MF KIPA+ALSDTVA+QLL+ ID G F RG++LPTEAVLAQQFGVSRTV+REA++RLK+E Sbjct: 1 MFDKIPARALSDTVAQQLLKQIDKGTFARGARLPTEAVLAQQFGVSRTVIREALSRLKNE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVEPRQGSGV+V I+PLRIDY E P +V+QI+ LRRAIEAEVA++AA RRS Sbjct: 61 GVVEPRQGSGVYVAGHGAIRPLRIDYAEAIEPGSVVQILALRRAIEAEVASEAAMRRSDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 D+ AI+A+LA+I VA G DGVA DVAFHRA+A AT NPYF+KTL FL+QYLEA T VT Sbjct: 121 DMAAIDASLARIAQAVADGEDGVAEDVAFHRAIAVATGNPYFLKTLTFLNQYLEAGTVVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEA EDFSRQVREEH AI AIR+GD MAARNAAQTH++NAARRL++ Sbjct: 181 RRNEALREDFSRQVREEHAAIAAAIRSGDPMAARNAAQTHLYNAARRLAE 230 >ref|YP_003909379.1| GntR domain-containing protein [Burkholderia sp. CCGE1003] gb|ADN60088.1| GntR domain protein [Burkholderia sp. CCGE1003] Length = 234 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 167/230 (72%), Positives = 191/230 (83%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MF KIPA+ALSDTVA+QLL+ ID GAF RG KLPTEAVLAQQFGVSRTV+REAI+RLK+E Sbjct: 1 MFDKIPARALSDTVAQQLLKQIDKGAFERGGKLPTEAVLAQQFGVSRTVIREAISRLKNE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVEPRQGSGVFV ++PLRIDY E P +V+QI+ LRRAIEAEVA++AA RRS Sbjct: 61 GVVEPRQGSGVFVAAHGTVRPLRIDYAEAVEPGSVVQILALRRAIEAEVASEAAMRRSDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 D+ AI+AALA+I VA G DGV DVAFHRA+A AT NPYF+KTL FL+QYLEA T VT Sbjct: 121 DMVAIDAALAKIDQAVAEGEDGVTEDVAFHRAIAAATGNPYFLKTLTFLNQYLEAGTVVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEA EDFSRQVR+EH AI AIRAGD MAARNAA+THM+NAARRL++ Sbjct: 181 RRNEALREDFSRQVRDEHAAIAAAIRAGDPMAARNAARTHMYNAARRLAE 230 >ref|YP_001889638.1| GntR domain-containing protein [Burkholderia phytofirmans PsJN] gb|ACD20267.1| GntR domain protein [Burkholderia phytofirmans PsJN] Length = 234 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 167/230 (72%), Positives = 191/230 (83%) Query: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 MF KIPA+ALSDTVA+QLL+ ID G F RG KLPTEAVLAQQFGVSRTV+REAI+RLK+E Sbjct: 1 MFDKIPARALSDTVAQQLLKQIDKGTFERGGKLPTEAVLAQQFGVSRTVIREAISRLKNE 60 Query: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 GVVEPRQGSGVFV ++PLRIDY E P +V+QI+ LRRAIEAEVA++AA RRS Sbjct: 61 GVVEPRQGSGVFVAAHGTVRPLRIDYAEAVEPGSVVQILALRRAIEAEVASEAAMRRSDA 120 Query: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 D+ +I+AALA+I VA G DGVA DVAFHRA+A AT NPYF+KTL FL+QYLEA T VT Sbjct: 121 DMVSIDAALAKIDEAVAEGEDGVAEDVAFHRAIAAATGNPYFLKTLTFLNQYLEAGTVVT 180 Query: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 R NEA EDFSRQVREEH AI AIRAGD MAARNAA+THM+NAARRL++ Sbjct: 181 RRNEALREDFSRQVREEHAAIAAAIRAGDPMAARNAARTHMYNAARRLAE 230