BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0238.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777600.1| hypothetical protein Hsero_4223 [Herbaspiril... 314 3e-84 ref|YP_264159.1| OmpA/MotB [Psychrobacter arcticus 273-4] >gi|71... 186 9e-46 ref|YP_004715787.1| OmpA/MotB [Pseudomonas stutzeri ATCC 17588 =... 177 5e-43 ref|ZP_06068985.1| OmpA/MotB [Acinetobacter lwoffii SH145] >gi|2... 161 3e-38 ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluoresc... 154 5e-36 ref|YP_560136.1| OmpA/MotB family outer membrane protein [Burkho... 152 1e-35 >ref|YP_003777600.1| hypothetical protein Hsero_4223 [Herbaspirillum seropedicae SmR1] gb|ADJ65692.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 161 Score = 314 bits (804), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 157/158 (99%), Positives = 157/158 (99%) Query: 1 VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60 VLRQVQTVFAQQGAASLVAVDTEAGKITL EGAFRRGSACVESEAKAAFAQVEERIAEYL Sbjct: 4 VLRQVQTVFAQQGAASLVAVDTEAGKITLKEGAFRRGSACVESEAKAAFAQVEERIAEYL 63 Query: 61 QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120 QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA Sbjct: 64 QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 123 Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP 158 RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP Sbjct: 124 RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP 161 >ref|YP_264159.1| OmpA/MotB [Psychrobacter arcticus 273-4] gb|AAZ18725.1| probable OmpA/MotB [Psychrobacter arcticus 273-4] Length = 211 Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 85/151 (56%), Positives = 109/151 (72%) Query: 1 VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60 +L +QT A QGA +L+ + E KITL + F RGSAC+ EAK AF +E++I +L Sbjct: 58 LLEDIQTSVATQGAGNLIDFNMEQSKITLKDNVFARGSACITPEAKTAFNNIEDKITSFL 117 Query: 61 QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120 QQ+ +I+VEGHTD+ PV PVTD R FCTVYDDN TLSAARAR+AR LLVG+ A Sbjct: 118 QQSSNAKIFVEGHTDNIPVSQPVTDYRRFCTVYDDNYTLSAARAREARKLLVGQLDTSIA 177 Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRF 151 +R++VAGYGDSQP+ G++ D+ NRRVEVR Sbjct: 178 KRIVVAGYGDSQPIKGISPEDDANRRVEVRL 208 >ref|YP_004715787.1| OmpA/MotB [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ06698.1| OmpA/MotB [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 215 Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 83/151 (54%), Positives = 110/151 (72%), Gaps = 3/151 (1%) Query: 2 LRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYLQ 61 L+Q + A +G LVA+D A K TL +G F RGSAC+ +A+ AF+ +EE++A++L Sbjct: 62 LKQTLSGTASEG---LVAIDVNAQKFTLRDGVFGRGSACITDQARQAFSSIEEKVADFLN 118 Query: 62 QNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAAR 121 + P G++YVEGHTD+ PV PVT+ AFCTVYDDN TLSAARAR+AR L+ G + AR Sbjct: 119 EFPKGKVYVEGHTDNLPVSRPVTNFEAFCTVYDDNFTLSAARAREARKLITGNLTLTDAR 178 Query: 122 RVIVAGYGDSQPLPGLAASDERNRRVEVRFV 152 RV+VAGYGDSQP+PG+ D R RR+EV +V Sbjct: 179 RVVVAGYGDSQPIPGVPPEDARQRRIEVLWV 209 >ref|ZP_06068985.1| OmpA/MotB [Acinetobacter lwoffii SH145] gb|EEY90487.1| OmpA/MotB [Acinetobacter lwoffii SH145] Length = 215 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 74/151 (49%), Positives = 101/151 (66%) Query: 1 VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60 +L ++ + GA++L++ D GKITL E F GSAC+ A F +++RI +L Sbjct: 58 MLTDLKNSVDETGASNLISFDIADGKITLKENIFNVGSACITPSAAKTFKSLDQRIVSFL 117 Query: 61 QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120 ++NP ++VEGHTD+ VK PV D + CTVYDDN TLSAARAR+AR L++ A Sbjct: 118 KENPKASVFVEGHTDNSIVKQPVLDFKEKCTVYDDNFTLSAARAREARKLIISSLDANEA 177 Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRF 151 RV+VAGYGDS+PL G+ SD RNRRVE++F Sbjct: 178 NRVVVAGYGDSRPLNGIDPSDGRNRRVEIQF 208 >ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gb|EFQ61232.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 229 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 103/158 (65%) Query: 1 VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60 +L +Q+ + G LV +D + ++TL + AF RGSAC+ A+ A + R+A ++ Sbjct: 69 LLAAMQSDLQRTGETDLVDIDIQNRRLTLPDNAFARGSACITPAAQGALTLLSARVATFI 128 Query: 61 QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120 + G++ VEGHTD+ PV PVTD FCTVYDDN TLSAARAR+AR LL+ P+ A Sbjct: 129 KDYGQGQVLVEGHTDNLPVSRPVTDYERFCTVYDDNYTLSAARAREARKLLIQAIEPQQA 188 Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP 158 RRV+VAGYGDS+P PG+ + NRRVEV+ V Q P Sbjct: 189 RRVVVAGYGDSRPKPGIDPASALNRRVEVQLVVATQPP 226 >ref|YP_560136.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans LB400] gb|ABE32084.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 212 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 112/155 (72%), Gaps = 3/155 (1%) Query: 1 VLRQVQTVFAQQG---AASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIA 57 V R +QT+ A+ G A+ L+ +D ++TL +G F RGSAC+ EA+AA V+ +A Sbjct: 55 VARMMQTLGAKLGNGEASGLMTLDRSTNRLTLRDGVFERGSACLTPEARAAIGAVQGELA 114 Query: 58 EYLQQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSP 117 ++ NP R+ VEG+TD+ PV PV D + FCTVYDDN TLSAARAR+AR L+G S Sbjct: 115 HFIADNPKARMLVEGYTDNLPVTRPVIDYQRFCTVYDDNFTLSAARAREARRALLGTISD 174 Query: 118 EAARRVIVAGYGDSQPLPGLAASDERNRRVEVRFV 152 +AA+R++VAGYG+S+PLPG+ A+D RNRRVEV+F+ Sbjct: 175 DAAKRIVVAGYGESRPLPGVDAADPRNRRVEVQFL 209