BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0165.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777539.1| cytochrome c oxidase polypeptide II precurso... 793 0.0 ref|YP_004751213.1| cytochrome c oxidase polypeptide II [Collimo... 692 0.0 ref|YP_001101153.1| cytochrome C oxidase polypeptide II (cytochr... 676 0.0 ref|YP_001354842.1| cytochrome c oxidase subunit II [Janthinobac... 665 0.0 ref|ZP_08273192.1| Cytochrome c oxidase polypeptide II [Oxalobac... 615 e-174 emb|CAQ56657.1| cytochrome c oxidase polypeptide II cytochrome a... 575 e-162 ref|ZP_00943906.1| Cytochrome c oxidase polypeptide II [Ralstoni... 575 e-162 emb|CCA88680.1| cytochrome C oxidase polypeptide II precursor (c... 573 e-161 gb|AEG70334.1| cytochrome c oxidase polypeptide II cytochrome aa... 572 e-161 ref|YP_294540.1| cytochrome c oxidase, subunit II:cytochrome c, ... 570 e-160 >ref|YP_003777539.1| cytochrome c oxidase polypeptide II precursor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65631.1| cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 386 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/386 (99%), Positives = 386/386 (100%) Query: 1 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI 60 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI Sbjct: 1 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI 180 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI Sbjct: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC Sbjct: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA 300 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA Sbjct: 241 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA 300 Query: 301 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVI 360 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQ+HLVLNGKNAMPPWKGVLNDTEIAAVI Sbjct: 301 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQIHLVLNGKNAMPPWKGVLNDTEIAAVI 360 Query: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 TYTRNSWSNKAQENIVQPAEVLAARK Sbjct: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 >ref|YP_004751213.1| cytochrome c oxidase polypeptide II [Collimonas fungivorans Ter331] gb|AEK60390.1| Cytochrome c oxidase polypeptide II [Collimonas fungivorans Ter331] Length = 390 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/390 (84%), Positives = 360/390 (92%), Gaps = 4/390 (1%) Query: 1 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI 60 M+ AKRL SL+LGASLL+A +P+WAVVDSPGGPAVLQMNFQPPVT+IA+QIYDLH LMLI Sbjct: 1 MEYAKRLISLMLGASLLSAAMPSWAVVDSPGGPAVLQMNFQPPVTQIAQQIYDLHHLMLI 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIF+AVFGVMFYSI+KHRKS+GHK+++FHEST VEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFLAVFGVMFYSILKHRKSLGHKSASFHESTGVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI 180 VAMKDTSNAD+TIKVTGMQWKWGYDYL G+G GISFLSNL+TP EQV D + KNDNYLI Sbjct: 121 VAMKDTSNADVTIKVTGMQWKWGYDYLNGDGAGISFLSNLSTPHEQVVDSTKVKNDNYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNP+VVPVNKKVRI+TTANDVIHSW IPAFGVKQDAIPGFVRDTWF+AEK+GTYRGQC Sbjct: 181 EVDNPMVVPVNKKVRIITTANDVIHSWGIPAFGVKQDAIPGFVRDTWFKAEKVGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA 300 VELCGKDHAFMPIVVNV+SE DYK WVDGKKKEMAA+ADDP+KTWT+DELKQRGEKVY A Sbjct: 241 VELCGKDHAFMPIVVNVLSEADYKTWVDGKKKEMAAQADDPSKTWTIDELKQRGEKVYTA 300 Query: 301 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGK----NAMPPWKGVLNDTEI 356 NC CHQA GKGVPGAFPALDG PVVNGP+ Q+++VLNGK MP WK VL+DTEI Sbjct: 301 NCAVCHQATGKGVPGAFPALDGDPVVNGPRAEQINVVLNGKVTGTMQMPAWKAVLSDTEI 360 Query: 357 AAVITYTRNSWSNKAQENIVQPAEVLAARK 386 AAVITYTRN+WSNKAQENIVQPAEVLAARK Sbjct: 361 AAVITYTRNNWSNKAQENIVQPAEVLAARK 390 >ref|YP_001101153.1| cytochrome C oxidase polypeptide II (cytochrome AA3 subunit 2) transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL63032.1| Cytochrome c oxidase, subunit II (Cytochrome aa3 subunit 2) [Herminiimonas arsenicoxydans] Length = 386 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/386 (84%), Positives = 355/386 (91%) Query: 1 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI 60 MK AKRLQSL+LGASLL AGLP+WAV DSPGGPAV Q+NF PVT+IAEQIY LH L+L+ Sbjct: 1 MKHAKRLQSLMLGASLLTAGLPSWAVTDSPGGPAVRQLNFHQPVTQIAEQIYSLHTLLLV 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIF+AVFGVMFYSI+KHRKSVGHK++TFHESTAVEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFLAVFGVMFYSIVKHRKSVGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI 180 VAMKDTSNAD+TIK TGMQWKWGYDYL GEG+GI FLSNLATPREQ+TDP+L KN+NYLI Sbjct: 121 VAMKDTSNADITIKATGMQWKWGYDYLAGEGQGIGFLSNLATPREQITDPTLTKNENYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNPVVVPVNKK+RIV TANDVIHSW IP+FGVKQDAIPGFVRDTWF+AEKIGTYRGQC Sbjct: 181 EVDNPVVVPVNKKIRIVLTANDVIHSWMIPSFGVKQDAIPGFVRDTWFKAEKIGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA 300 ELCGKDHAFMPIVVNVVS++DYK WVDGKKKEMAA ADDPNKTWTVDEL QRGEKVY A Sbjct: 241 AELCGKDHAFMPIVVNVVSDEDYKVWVDGKKKEMAANADDPNKTWTVDELVQRGEKVYTA 300 Query: 301 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVI 360 NC+ CHQANGKGVPG+FPALD SP+V GPK +H+V+ GK AMP WK VL+DTEIAAVI Sbjct: 301 NCIACHQANGKGVPGSFPALDASPIVTGPKAANIHMVMEGKGAMPAWKPVLSDTEIAAVI 360 Query: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 TYTRN WSNKA ENIVQPAEVLAARK Sbjct: 361 TYTRNHWSNKAAENIVQPAEVLAARK 386 >ref|YP_001354842.1| cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] gb|ABR90493.1| cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] Length = 386 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/386 (83%), Positives = 351/386 (90%) Query: 1 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI 60 MK AKRLQSL+LGAS LAAG+P+WAV DSPGGPAV Q+NF PVT+IAEQIY LH LMLI Sbjct: 1 MKHAKRLQSLMLGASFLAAGMPSWAVTDSPGGPAVRQLNFHEPVTQIAEQIYSLHTLMLI 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIFVAVFGVMFYSI KHRKS+GHK++TFHESTAVEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFVAVFGVMFYSIFKHRKSLGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI 180 VAMKDTSNAD+TIK TGMQWKWGY+YL GEGEGI+FLSNL+TPREQ+ D + KN+NYLI Sbjct: 121 VAMKDTSNADITIKATGMQWKWGYNYLNGEGEGINFLSNLSTPREQIVDNTKVKNENYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNPVVVPVNKK+RIV TANDVIH+W IPAFGVKQDAIPGFVRDTWF+AEKIGTYRGQC Sbjct: 181 EVDNPVVVPVNKKIRIVLTANDVIHAWMIPAFGVKQDAIPGFVRDTWFKAEKIGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA 300 ELCGKDHAFMPIVVNVVS++DYK WVDGKKKEMAA ADDP KTWTVDEL QRGEKVY A Sbjct: 241 AELCGKDHAFMPIVVNVVSDEDYKAWVDGKKKEMAANADDPTKTWTVDELVQRGEKVYTA 300 Query: 301 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVI 360 NC+ CHQANGKGVPG+FPALD SP+V GPK +H+V+ GK AMP WK VL+DTEIAAVI Sbjct: 301 NCIACHQANGKGVPGSFPALDASPIVTGPKAANIHMVMEGKGAMPAWKPVLSDTEIAAVI 360 Query: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 TYTRN WSNKA ENIVQPAEVLAARK Sbjct: 361 TYTRNHWSNKASENIVQPAEVLAARK 386 >ref|ZP_08273192.1| Cytochrome c oxidase polypeptide II [Oxalobacteraceae bacterium IMCC9480] gb|EGF33336.1| Cytochrome c oxidase polypeptide II [Oxalobacteraceae bacterium IMCC9480] Length = 415 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 294/391 (75%), Positives = 335/391 (85%), Gaps = 6/391 (1%) Query: 1 MKLAKRLQSLILGASLLAAGLP-AWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILML 59 MK KRLQS++ A+L A+GL A V D PGGPAV Q+N P VTKIAEQIY LH ML Sbjct: 26 MKQVKRLQSMMFAATLAASGLARAAEVQDIPGGPAVRQLNLHPGVTKIAEQIYSLHTFML 85 Query: 60 IICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKT 119 IICLVIFVAVFGVMFYSI+KHRKS+GHK++TFHESTAVEIAWT+VPF+IVI MALPAT+T Sbjct: 86 IICLVIFVAVFGVMFYSILKHRKSLGHKSATFHESTAVEIAWTIVPFVIVIAMALPATRT 145 Query: 120 VVAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLK----KN 175 VVAMKDTSNAD+TIK TGMQWKWGYDYLKGEGEGI+FLSNL+TPR Q+ P + + Sbjct: 146 VVAMKDTSNADITIKATGMQWKWGYDYLKGEGEGIAFLSNLSTPRSQIGAPGVAPTEPRG 205 Query: 176 DNYLIEVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGT 235 +NYL+EVDN +VVPV +K+RI+TTANDVIH+W +P GV+QDAIPGFVRD WF+AE+ GT Sbjct: 206 NNYLLEVDNEMVVPVGRKIRIITTANDVIHAWGMPMLGVQQDAIPGFVRDAWFKAEEAGT 265 Query: 236 YRGQCVELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGE 295 +RGQC +LCG +HA+MPIVV VS+ DYK WVDGKKKEMA+ ADDPNK +TVDELKQRGE Sbjct: 266 FRGQCDKLCGAEHAYMPIVVRAVSDADYKIWVDGKKKEMASLADDPNKVYTVDELKQRGE 325 Query: 296 KVYAANCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTE 355 KVY+ NCV CHQA GKGVPGAFPALDGS VVNG K Q+HL+LNGKNAMP WK L+DT+ Sbjct: 326 KVYSTNCVACHQATGKGVPGAFPALDGSLVVNGVKADQIHLLLNGKNAMPAWKS-LSDTD 384 Query: 356 IAAVITYTRNSWSNKAQENIVQPAEVLAARK 386 IAAVITYTRNSWSNKA ENIVQPAEVLAARK Sbjct: 385 IAAVITYTRNSWSNKAAENIVQPAEVLAARK 415 >emb|CAQ56657.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2 protein [Ralstonia solanacearum MolK2] Length = 527 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 277/381 (72%), Positives = 312/381 (81%), Gaps = 3/381 (0%) Query: 5 KRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLIICLV 64 K L L+ SLLA G A AV D PGGPAV Q+N PPVTKIA +I+ LH +MLIIC+V Sbjct: 6 KTLAGLLAAGSLLAFGQTALAVDDMPGGPAVRQLNLAPPVTKIAAEIHWLHYMMLIICIV 65 Query: 65 IFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMK 124 IFV VFGVMFYSI KHRKS+GHK +TFHEST VEI WT+VPFLIVIGMALPAT+ VVAMK Sbjct: 66 IFVGVFGVMFYSIFKHRKSLGHKPATFHESTTVEIIWTIVPFLIVIGMALPATRAVVAMK 125 Query: 125 DTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLIEVDN 184 DT+N+DLTIK TG QWKWGYDYLKGEGEGISFLS L TPR+Q+ D K+D YL+EVDN Sbjct: 126 DTTNSDLTIKATGYQWKWGYDYLKGEGEGISFLSTLTTPRDQI-DNLAPKSDTYLVEVDN 184 Query: 185 PVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQCVELC 244 +VVPVN+KVRIVTTANDVIHSW IPAFGVKQDAIPGFVRDTWF+AEK+G YRGQC ELC Sbjct: 185 ELVVPVNRKVRIVTTANDVIHSWMIPAFGVKQDAIPGFVRDTWFKAEKVGVYRGQCAELC 244 Query: 245 GKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAANCVT 304 GK+HAFMPIVV V+S+ DY QWVDGKKKEMAAKADDPNKT+T+DELK RGEKVYA+NC Sbjct: 245 GKEHAFMPIVVRVLSDGDYTQWVDGKKKEMAAKADDPNKTYTLDELKTRGEKVYASNCAV 304 Query: 305 CHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVITYTR 364 CHQ NGKG G FPALDGS + NGP V +VL+GK AMPPW LND EIA+VITY R Sbjct: 305 CHQPNGKG-GGPFPALDGSKIANGPLADHVGIVLHGKGAMPPWASALNDVEIASVITYER 363 Query: 365 NSWSNKAQENIVQPAEVLAAR 385 N+W N + ++QP +V AR Sbjct: 364 NNWGNHTND-VLQPTQVKEAR 383 >ref|ZP_00943906.1| Cytochrome c oxidase polypeptide II [Ralstonia solanacearum UW551] ref|YP_002258599.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2 oxidoreductase protein [Ralstonia solanacearum IPO1609] gb|EAP73575.1| Cytochrome c oxidase polypeptide II [Ralstonia solanacearum UW551] emb|CAQ60522.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2 oxidoreductase protein [Ralstonia solanacearum IPO1609] Length = 525 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 277/381 (72%), Positives = 312/381 (81%), Gaps = 3/381 (0%) Query: 5 KRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLIICLV 64 K L L+ SLLA G A AV D PGGPAV Q+N PPVTKIA +I+ LH +MLIIC+V Sbjct: 6 KTLAGLLAAGSLLAFGQTALAVDDMPGGPAVRQLNLAPPVTKIAAEIHWLHYMMLIICIV 65 Query: 65 IFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMK 124 IFV VFGVMFYSI KHRKS+GHK +TFHEST VEI WT+VPFLIVIGMALPAT+ VVAMK Sbjct: 66 IFVGVFGVMFYSIFKHRKSLGHKPATFHESTTVEIIWTIVPFLIVIGMALPATRAVVAMK 125 Query: 125 DTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLIEVDN 184 DT+N+DLTIK TG QWKWGYDYLKGEGEGISFLS L TPR+Q+ D K+D YL+EVDN Sbjct: 126 DTTNSDLTIKATGYQWKWGYDYLKGEGEGISFLSTLTTPRDQI-DNLAPKSDTYLVEVDN 184 Query: 185 PVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQCVELC 244 +VVPVN+KVRIVTTANDVIHSW IPAFGVKQDAIPGFVRDTWF+AEK+G YRGQC ELC Sbjct: 185 ELVVPVNRKVRIVTTANDVIHSWMIPAFGVKQDAIPGFVRDTWFKAEKVGVYRGQCAELC 244 Query: 245 GKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAANCVT 304 GK+HAFMPIVV V+S+ DY QWVDGKKKEMAAKADDPNKT+T+DELK RGEKVYA+NC Sbjct: 245 GKEHAFMPIVVRVLSDGDYTQWVDGKKKEMAAKADDPNKTYTLDELKTRGEKVYASNCAV 304 Query: 305 CHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVITYTR 364 CHQ NGKG G FPALDGS + NGP V +VL+GK AMPPW LND EIA+VITY R Sbjct: 305 CHQPNGKG-GGPFPALDGSKIANGPLADHVGIVLHGKGAMPPWASALNDVEIASVITYER 363 Query: 365 NSWSNKAQENIVQPAEVLAAR 385 N+W N + ++QP +V AR Sbjct: 364 NNWGNHTND-VLQPTQVKEAR 383 >emb|CCA88680.1| cytochrome C oxidase polypeptide II precursor (cytochrome AA3 subunit 2) [Ralstonia syzygii R24] Length = 416 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/381 (72%), Positives = 312/381 (81%), Gaps = 3/381 (0%) Query: 5 KRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLIICLV 64 K L L+ SLLA G A AV D PGGPAV Q+N PPVTKIA +I+ LH +MLIIC+V Sbjct: 4 KTLAGLLTAGSLLALGQTALAVEDMPGGPAVRQLNLAPPVTKIAAEIHWLHYMMLIICIV 63 Query: 65 IFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMK 124 IF+ VFGVMFYSI KHRKS+GHK +TFHEST VEI WT+VPFLIVIGMALPAT+ VVAMK Sbjct: 64 IFIGVFGVMFYSIFKHRKSLGHKPATFHESTTVEIIWTIVPFLIVIGMALPATRAVVAMK 123 Query: 125 DTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLIEVDN 184 DT+N+DLTIK TG QWKWGYDYLKGEGEGISFLS L TPR+Q+ D K+D YLIEVDN Sbjct: 124 DTTNSDLTIKATGYQWKWGYDYLKGEGEGISFLSTLTTPRDQI-DNLAPKSDTYLIEVDN 182 Query: 185 PVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQCVELC 244 +VVPVN+KVRIVTTANDVIHSW IPAFGVKQDAIPGFVRDTWF+AEK+G YRGQC ELC Sbjct: 183 ELVVPVNRKVRIVTTANDVIHSWMIPAFGVKQDAIPGFVRDTWFKAEKVGVYRGQCAELC 242 Query: 245 GKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAANCVT 304 GK+HAFMPIVV+VVS+ DY +WVDGKKKEMAAKADDPNKT+T+DELK RGEKVY ANC Sbjct: 243 GKEHAFMPIVVHVVSDADYTKWVDGKKKEMAAKADDPNKTYTLDELKTRGEKVYTANCAV 302 Query: 305 CHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVITYTR 364 CHQ NGKG G FPALDGS + GP V++VL+GK AMPPW LND EIA+VITY R Sbjct: 303 CHQPNGKG-GGPFPALDGSKIATGPLADHVNIVLHGKAAMPPWASALNDVEIASVITYER 361 Query: 365 NSWSNKAQENIVQPAEVLAAR 385 N+W N + ++QP +V AR Sbjct: 362 NNWGNHTND-VLQPTQVKEAR 381 >gb|AEG70334.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2 protein [Ralstonia solanacearum Po82] Length = 417 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/381 (72%), Positives = 312/381 (81%), Gaps = 3/381 (0%) Query: 5 KRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLIICLV 64 K L L+ SLLA G A AV D PGGPAV Q+N PPVTKIA +I+ LH +MLIIC+V Sbjct: 4 KTLAGLLAAGSLLAFGQTALAVDDMPGGPAVRQLNLAPPVTKIAAEIHWLHYMMLIICIV 63 Query: 65 IFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMK 124 IFV VFGVMFYSI KHRKS+GHK +TFHEST VEI WT+VPFLIVIGMALPAT+ VVAMK Sbjct: 64 IFVGVFGVMFYSIFKHRKSLGHKPATFHESTTVEIIWTIVPFLIVIGMALPATRAVVAMK 123 Query: 125 DTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLIEVDN 184 DT+N+DLTIK TG QWKWGYDYLKGEGEGISFLS L TPR+Q+ D K+D YL+EVDN Sbjct: 124 DTTNSDLTIKATGYQWKWGYDYLKGEGEGISFLSTLTTPRDQI-DNLAPKSDTYLVEVDN 182 Query: 185 PVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQCVELC 244 +VVPVN+KVRIVTTANDVIHSW IPAFGVKQDAIPGFVRDTWF+AEK+G YRGQC ELC Sbjct: 183 ELVVPVNRKVRIVTTANDVIHSWMIPAFGVKQDAIPGFVRDTWFKAEKVGVYRGQCAELC 242 Query: 245 GKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAANCVT 304 GK+HAFMPIVV V+S+ DY +WVDGKKKEMAAKADDPNKT+T+DELK RGEKVYA+NC Sbjct: 243 GKEHAFMPIVVRVLSDGDYTRWVDGKKKEMAAKADDPNKTYTLDELKTRGEKVYASNCAV 302 Query: 305 CHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVITYTR 364 CHQ NGKG G FPALDGS + NGP V +VL+GK AMPPW LND EIA+VITY R Sbjct: 303 CHQPNGKG-GGPFPALDGSKIANGPLADHVGIVLHGKGAMPPWASALNDVEIASVITYER 361 Query: 365 NSWSNKAQENIVQPAEVLAAR 385 N+W N + ++QP +V AR Sbjct: 362 NNWGNHTND-VLQPTQVKEAR 381 >ref|YP_294540.1| cytochrome c oxidase, subunit II:cytochrome c, class I:cytochrome C oxidase subunit II, transmembrane region [Ralstonia eutropha JMP134] gb|AAZ59696.1| Cytochrome c oxidase, subunit II:Cytochrome c, class I:Cytochrome C oxidase subunit II, transmembrane region [Ralstonia eutropha JMP134] Length = 421 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 275/385 (71%), Positives = 319/385 (82%), Gaps = 4/385 (1%) Query: 1 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI 60 MK+ K+ ++ L ++ L A A AV D PGGPAV Q+N PVTKIAEQI+ L+ +MLI Sbjct: 1 MKMWKKASAVCLASASLLASQAALAVSDMPGGPAVRQLNLTEPVTKIAEQIHWLNWMMLI 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 IC VIFVAVFGVMFYS+ HRK+ G K ++FHES VE+ WT+VPFLIVI MALPATKTV Sbjct: 61 ICTVIFVAVFGVMFYSVFTHRKAKGAKPASFHESITVEVVWTIVPFLIVIAMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI 180 VAMKDT+N+D+TIK TG QWKWGYDYLKGEGEGISF+S L TPREQ+ + + K N YL+ Sbjct: 121 VAMKDTTNSDVTIKATGYQWKWGYDYLKGEGEGISFVSTLTTPREQINNEAPKSN-TYLM 179 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDN +VVPVNKKVRIVTTANDVIH+W IPAFGVKQDAIPGFVRDTWF+AEKIG YRGQC Sbjct: 180 EVDNELVVPVNKKVRIVTTANDVIHAWMIPAFGVKQDAIPGFVRDTWFKAEKIGVYRGQC 239 Query: 241 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA 300 ELCGK+HAFMPIVV VVS+ DY +WVDGKKKEMAAKADDPNKTWT+DE+K RGEKVY A Sbjct: 240 AELCGKEHAFMPIVVRVVSDADYTKWVDGKKKEMAAKADDPNKTWTLDEMKARGEKVYTA 299 Query: 301 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQVHLVLNGKNAMPPWKGVLNDTEIAAVI 360 NC CHQ NGKG GAFPALDGS +VNGPK GQ+H++L GKNAMP WK L+DTE+AA + Sbjct: 300 NCAVCHQPNGKG-GGAFPALDGSKIVNGPKAGQMHIMLEGKNAMPSWKQ-LSDTELAAAM 357 Query: 361 TYTRNSWSNKAQENIVQPAEVLAAR 385 TY RNSWSNK E ++QP++ + AR Sbjct: 358 TYVRNSWSNKTGE-VIQPSDFVNAR 381