BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0159.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777533.1| transmembrane cytochrome oxidase complex bio... 449 e-124 ref|YP_001354837.1| hypothetical protein mma_3147 [Janthinobacte... 244 7e-63 ref|YP_004751220.1| cytochrome oxidase biogenesis protein Surf1,... 237 1e-60 ref|YP_001101147.1| SURF1-like protein [Herminiimonas arsenicoxy... 212 4e-53 ref|ZP_08273198.1| Cytochrome oxidase biogenesis protein Surf1, ... 206 2e-51 ref|YP_001856522.1| hypothetical protein Bphy_0283 [Burkholderia... 169 4e-40 ref|YP_004030307.1| cytochrome c oxidase assembly protein Surf1 ... 167 1e-39 ref|YP_003603894.1| Surfeit locus 1 family protein [Burkholderia... 160 2e-37 ref|ZP_04944665.1| SURF1 family protein [Burkholderia dolosa AUO... 159 2e-37 ref|YP_836483.1| surfeit locus 1 [Burkholderia cenocepacia HI242... 159 2e-37 >ref|YP_003777533.1| transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65625.1| transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/226 (100%), Positives = 226/226 (100%) Query: 1 MLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQSLQDEFRQVSLRGQ 60 MLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQSLQDEFRQVSLRGQ Sbjct: 15 MLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQSLQDEFRQVSLRGQ 74 Query: 61 FIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPPAQG 120 FIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPPAQG Sbjct: 75 FIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPPAQG 134 Query: 121 TTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDVSDG 180 TTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDVSDG Sbjct: 135 TTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDVSDG 194 Query: 181 LLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRGRNDKT 226 LLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRGRNDKT Sbjct: 195 LLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRGRNDKT 240 >ref|YP_001354837.1| hypothetical protein mma_3147 [Janthinobacterium sp. Marseille] gb|ABR90221.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 237 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 118/218 (54%), Positives = 155/218 (71%), Gaps = 8/218 (3%) Query: 8 GIALGQWQTHRAQEKQALQARMQARAAEAPL----SALPPDDQSLQDEFRQVSLRGQFIP 63 G++LGQWQT RA EK A++ ++ R A A L SAL PDD EFR++S++G+F+ Sbjct: 22 GLSLGQWQTRRAAEKIAIEQKIHERQAAASLQLSDSALNPDDI----EFRRLSVKGEFLQ 77 Query: 64 QWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPPAQGTTE 123 W +YL+NRPH G GF++L FK GS ++VARGW PR+ DRT++P G + Sbjct: 78 DWPVYLDNRPHNGVAGFYLLMPFKVAGSQLHILVARGWIPRNVADRTKMPAIVTPNGQLQ 137 Query: 124 VQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDVSDGLLR 183 ++G+ RRD GHV+QLG+ DAPRP AI+QNLD+A A ASG+ +S V+EQ D DGL+R Sbjct: 138 IEGVARRDIGHVMQLGEVDAPRPHAIVQNLDVAGFAAASGLQMSPIVLEQLTDTGDGLVR 197 Query: 184 DWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRG 221 DWP PS G+D+HRGYA QWY LAAMA +FF+VTG RRG Sbjct: 198 DWPVPSSGVDKHRGYAFQWYGLAAMAFIFFVVTGIRRG 235 >ref|YP_004751220.1| cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Collimonas fungivorans Ter331] gb|AEK60397.1| Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Collimonas fungivorans Ter331] Length = 239 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 122/227 (53%), Positives = 157/227 (69%), Gaps = 8/227 (3%) Query: 2 LIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPL---SALPPDDQSLQDEFRQVSLR 58 +++ GIAL QWQT R +KQA+++R+ R A+A + +AL D Q EFR+++LR Sbjct: 3 VLLVVLGIALAQWQTRRGDQKQAIESRLLRREADATVRLGAALQVQDVD-QLEFRRMALR 61 Query: 59 GQFIPQWTLYLENRPHQGAVGFHVLTLFK----PEGSAQAVVVARGWAPRDAVDRTRVPQ 114 G+FI W +YL+NRP G GF+VL FK G A ++VARGW PRD DR+++P Sbjct: 62 GEFIAGWPVYLDNRPLNGVAGFYVLMPFKLAASDTGVANYILVARGWLPRDPADRSKLPS 121 Query: 115 SPPAQGTTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQG 174 P GT E++GL+RRD GHVLQLG A RP AI+QNL ++ A AS L FVIEQ Sbjct: 122 YPTPAGTVEIEGLVRRDFGHVLQLGDAAPLRPQAIVQNLAVSEFATASKFKLQPFVIEQT 181 Query: 175 GDVSDGLLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRG 221 + D LLRDWP PSLGI++HRGYA QWYALAAMA++FF+VTGFRRG Sbjct: 182 SNTEDHLLRDWPRPSLGIEKHRGYAFQWYALAAMALIFFVVTGFRRG 228 >ref|YP_001101147.1| SURF1-like protein [Herminiimonas arsenicoxydans] emb|CAL63026.1| Conserved hypothetical protein; putative cytochrome c biogenesis [Herminiimonas arsenicoxydans] Length = 237 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 106/215 (49%), Positives = 143/215 (66%), Gaps = 2/215 (0%) Query: 8 GIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQSLQD-EFRQVSLRGQFIPQWT 66 G++L QWQT RA EK + A++Q R A AP L QS +D E+R+V ++G+F+ W Sbjct: 22 GLSLAQWQTRRAVEKLTIAAQLQERQA-APAIRLGALLQSPEDLEYRRVLVKGEFLRDWP 80 Query: 67 LYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPPAQGTTEVQG 126 +YL+NRPH G GF++L FK S V+VARGW PR+ DRT++P +G E++G Sbjct: 81 VYLDNRPHNGVAGFYLLMPFKIAASNLHVLVARGWIPRNPADRTKLPAIVTPEGEIEIEG 140 Query: 127 LLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDVSDGLLRDWP 186 R G V+QLG DAP+ AI+QNLD+ + A S + + +EQ D DGL+RDWP Sbjct: 141 TAHRSIGSVMQLGALDAPQAHAIVQNLDITSFAATSKLAMQPIFLEQLSDTHDGLVRDWP 200 Query: 187 APSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRG 221 PS G+++HRGYA QWYALAAMA +FF+VTG RRG Sbjct: 201 QPSSGVEKHRGYAFQWYALAAMAFIFFVVTGIRRG 235 >ref|ZP_08273198.1| Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Oxalobacteraceae bacterium IMCC9480] gb|EGF33342.1| Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Oxalobacteraceae bacterium IMCC9480] Length = 240 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 112/220 (50%), Positives = 148/220 (67%), Gaps = 11/220 (5%) Query: 8 GIALGQWQTHRAQEKQALQARMQARAAEAPLSAL---PPDDQSLQDEFRQVSLRGQFIPQ 64 GI+L QWQT RA EKQ ++A++ ARA+ AP+ AL P +L E+R+VS+RG+F+ Sbjct: 22 GISLAQWQTRRAAEKQQIEAQLTARAS-APVMALGATPVQADAL--EYRRVSVRGEFVSD 78 Query: 65 WTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDR-TRVPQSPPAQGTTE 123 W +YL+NRP G G +V+ F+ GS V+V RGW + +R T +P PA G E Sbjct: 79 WPVYLDNRPQDGRPGLYVVMPFRIAGSTNHVLVERGWIALNTANRATMLPYQTPA-GEIE 137 Query: 124 VQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQG---GDVSDG 180 + G +RR AG V+QLG A +PGA+LQNL++ ++ASGM + +IEQ G +DG Sbjct: 138 ISGTVRRHAGRVMQLGNAAELKPGALLQNLEIVDFSRASGMAMQPVLIEQATTPGAAADG 197 Query: 181 LLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRR 220 L+RDWP PS GID HRGYA QWYALA MA LFF+VTGFRR Sbjct: 198 LVRDWPTPSSGIDMHRGYAFQWYALAGMAFLFFVVTGFRR 237 >ref|YP_001856522.1| hypothetical protein Bphy_0283 [Burkholderia phymatum STM815] gb|ACC69476.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 255 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 135/226 (59%), Gaps = 3/226 (1%) Query: 1 MLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQSLQD-EFRQVSLRG 59 +LIV A + LG WQ RA +K+ALQA + A+ AP + +L+D EF +V G Sbjct: 11 ILIVVAVTLRLGFWQRDRAHQKEALQAHI-AQFESAPAQRIGAAPIALKDIEFHRVRAVG 69 Query: 60 QFIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPPAQ 119 QF+PQ +YL+NRP+ GF+V+ FK V+V RGW PR+ +RT + + Sbjct: 70 QFMPQQVVYLDNRPYNDQAGFYVVMPFKLRDGGY-VLVNRGWLPRNMNERTAIAPYDTPK 128 Query: 120 GTTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDVSD 179 G E++G+ R DA +LGQ + I QNLD+A+ A +G+PL FVI+Q GD D Sbjct: 129 GEIEIEGIARADASRAYELGQGGSAAHQPIRQNLDVASYAAETGLPLQPFVIQQTGDTGD 188 Query: 180 GLLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRGRNDK 225 L+RDWPAP+ G++R+ GY QW+ +AA AV+F + R +N K Sbjct: 189 KLVRDWPAPATGVERNYGYMFQWWGMAAAAVVFGLYAARRGAKNAK 234 >ref|YP_004030307.1| cytochrome c oxidase assembly protein Surf1 [Burkholderia rhizoxinica HKI 454] emb|CBW76163.1| Cytochrome c oxidase assembly protein Surf1 [Burkholderia rhizoxinica HKI 454] Length = 238 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 139/229 (60%), Gaps = 10/229 (4%) Query: 1 MLIVAAAGIALGQWQTHRAQEKQALQARMQ--ARAAEAPLSALPPDDQSLQD-EFRQVSL 57 +LIV A + LG WQ RA +K+ALQAR++ A+ PL+A +L D EF +V Sbjct: 12 VLIVVAVTVRLGFWQRDRAHQKEALQARIERFEHASPIPLNA----RTALADVEFHRVVA 67 Query: 58 RGQFIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPP 117 RG+F+P T+YL+NR H GF+V+T K E V+V RGW PR+A R+ + Sbjct: 68 RGRFVPDSTVYLDNRLHNDQPGFYVVTPLKLEAGGY-VLVNRGWLPRNAQQRSVIAPYRT 126 Query: 118 AQGTTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDV 177 G ++G+ R DA +LGQ + +I QNLD+A+ A +G+PL FV++Q D Sbjct: 127 PSGVVTIEGVARADASRAFELGQGGSTPHQSIRQNLDVASYAAETGLPLEPFVLQQTNDT 186 Query: 178 SDGLLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFR--RGRND 224 +DGL+RDWPAP+ G++R+ GY VQW+ +A A++F + R RG ND Sbjct: 187 ADGLVRDWPAPNTGVERNYGYMVQWWGMALAALVFGLYAARRAARGGND 235 >ref|YP_003603894.1| Surfeit locus 1 family protein [Burkholderia sp. CCGE1002] gb|ADG14383.1| Surfeit locus 1 family protein [Burkholderia sp. CCGE1002] Length = 238 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 129/217 (59%), Gaps = 7/217 (3%) Query: 11 LGQWQTHRAQEKQALQARMQ--ARAAEAPLSALPPDDQSLQD-EFRQVSLRGQFIPQWTL 67 LG WQ RA +K+AL+AR+ A P+SA P +L+D EF +V RG F+ + Sbjct: 21 LGFWQRDRAHQKEALEARITQFENAPALPVSAAP---LALKDVEFHRVKARGSFVADKVV 77 Query: 68 YLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPPAQGTTEVQGL 127 YL+NRP+ GF+V+ F+ V+V RGW PR+ +R + G E++G+ Sbjct: 78 YLDNRPYNDQPGFYVVMPFRLADGGY-VLVNRGWLPRNLSNRETIAPYATPSGEVEIEGI 136 Query: 128 LRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDVSDGLLRDWPA 187 R DA +LG+ + I QNLD+AA A +G+PL FVI+Q GDV DGL+RDWPA Sbjct: 137 ARADASRAFELGEGGSAAHHLIRQNLDVAAYAAETGLPLQSFVIQQIGDVRDGLVRDWPA 196 Query: 188 PSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRGRND 224 P+ G++R+ GY +QW+ +AA A+ F + R G+ + Sbjct: 197 PTTGVERNYGYMLQWWGMAAAALAFGLYAARRAGKKE 233 >ref|ZP_04944665.1| SURF1 family protein [Burkholderia dolosa AUO158] gb|EAY67836.1| SURF1 family protein [Burkholderia dolosa AUO158] Length = 236 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/215 (41%), Positives = 130/215 (60%), Gaps = 7/215 (3%) Query: 1 MLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAP---LSALPPDDQSLQDEFRQVSL 57 +L+V A+ I LG WQ RA +K+AL A + R AP + A P S+ EF +V Sbjct: 11 ILVVVASAIRLGFWQRDRAHQKEALHASI-VRYEHAPPVDIGAQPIPLASI--EFHRVRA 67 Query: 58 RGQFIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRVPQSPP 117 +G+FIP+ ++L+NRP+ GF+V+ FK G V+V RGW PR+ DRT + P Sbjct: 68 KGRFIPEQAVFLDNRPYNDQPGFYVVMPFKLAGGGY-VLVNRGWLPRNIADRTAIEPFPT 126 Query: 118 AQGTTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDV 177 +G E++G+ R DA +LG+ + I QNLD+AA A+ +G+PL FVI+Q D Sbjct: 127 PEGEIEIEGIARADASRAFELGEGGSAAHQKIRQNLDVAAYAKETGLPLQPFVIQQTSDD 186 Query: 178 SDGLLRDWPAPSLGIDRHRGYAVQWYALAAMAVLF 212 D L+RDWPA + G++R+ GY QW+ +AA A+ F Sbjct: 187 GDKLVRDWPAATTGVERNYGYMFQWWGIAAAALGF 221 >ref|YP_836483.1| surfeit locus 1 [Burkholderia cenocepacia HI2424] gb|ABK09590.1| surfeit locus 1 [Burkholderia cenocepacia HI2424] Length = 237 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/215 (42%), Positives = 133/215 (61%), Gaps = 7/215 (3%) Query: 1 MLIVAAAGIALGQWQTHRAQEKQALQARMQ--ARAAEAPLSALPPDDQSLQDEFRQVSLR 58 +L+V A I LG WQ RA +K+ALQA ++ RAA + A P S+ EF +V + Sbjct: 12 ILVVVAVTIRLGFWQRDRAHQKEALQASIERYERAAPVDIGAQPVPLASI--EFHRVRAK 69 Query: 59 GQFIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVDRTRV-PQSPP 117 G+F+P+ ++L+NRP+ GF+V+ FK G V+V RGW PR+ DRT + P + P Sbjct: 70 GRFMPEQAVFLDNRPYNDQPGFYVVMPFKLTGGG-VVLVNRGWLPRNIADRTAIEPFATP 128 Query: 118 AQGTTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPLSGFVIEQGGDV 177 A G E+ G+ R DA +LG+ + I QNLD+AA A+ +G+PL FVI+Q D Sbjct: 129 A-GDVEIVGIARADASRAFELGEGGSAAHQKIRQNLDVAAYAKETGLPLQPFVIQQTSDD 187 Query: 178 SDGLLRDWPAPSLGIDRHRGYAVQWYALAAMAVLF 212 D L+RDWPA + G++R+ GY QW+A+AA A+ F Sbjct: 188 GDKLVRDWPAATTGVERNYGYMFQWWAMAAAALGF 222